Wall clock time and date at job start Sun Mar 29 2020 23:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47110 * 2 1 4 4 H 1.08999 * 109.46876 * 181.30765 * 3 2 1 5 5 C 1.50701 * 109.47454 * 61.30486 * 3 2 1 6 6 H 1.08000 * 120.00036 * 274.68544 * 5 3 2 7 7 C 1.37877 * 119.99960 * 94.67780 * 5 3 2 8 8 N 1.31509 * 119.99891 * 184.46746 * 7 5 3 9 9 Si 1.86801 * 120.00068 * 4.47491 * 7 5 3 10 10 H 1.48503 * 109.47158 * 87.56418 * 9 7 5 11 11 H 1.48496 * 109.47139 * 207.56498 * 9 7 5 12 12 H 1.48504 * 109.47297 * 327.56563 * 9 7 5 13 13 N 1.46895 * 109.47001 * 301.30408 * 3 2 1 14 14 C 1.47982 * 111.06078 * 306.60107 * 13 3 2 15 15 C 1.53925 * 113.35862 * 192.20963 * 14 13 3 16 16 C 1.50540 * 112.93380 * 317.73609 * 15 14 13 17 17 C 1.54515 * 108.85783 * 91.75618 * 16 15 14 18 18 H 1.09001 * 109.04314 * 43.31372 * 17 16 15 19 19 O 1.42903 * 109.03910 * 162.18267 * 17 16 15 20 20 C 1.42899 * 113.99954 * 272.17110 * 19 17 16 21 21 C 1.45878 * 111.67560 * 282.74555 * 17 16 15 22 22 C 1.44307 * 111.00004 * 179.16370 * 13 3 2 23 23 H 1.09000 * 109.47073 * 303.75822 * 1 2 3 24 24 H 1.09003 * 109.46590 * 63.75317 * 1 2 3 25 25 H 1.08996 * 109.47434 * 183.75283 * 1 2 3 26 26 H 1.09000 * 109.47372 * 239.99600 * 2 1 3 27 27 H 1.09007 * 109.46673 * 119.99336 * 2 1 3 28 28 H 0.97005 * 119.99957 * 180.02562 * 8 7 5 29 29 H 1.09003 * 108.71710 * 71.19871 * 14 13 3 30 30 H 1.09001 * 108.68069 * 313.20165 * 14 13 3 31 31 H 1.08996 * 108.78726 * 196.84157 * 15 14 13 32 32 H 1.08995 * 108.78710 * 78.62915 * 15 14 13 33 33 H 1.08994 * 109.57463 * 331.93917 * 16 15 14 34 34 H 1.09005 * 109.56828 * 211.56813 * 16 15 14 35 35 H 1.08993 * 109.47312 * 59.99661 * 20 19 17 36 36 H 1.09008 * 109.46672 * 179.97438 * 20 19 17 37 37 H 1.09001 * 109.46560 * 299.99108 * 20 19 17 38 38 H 1.09005 * 108.84256 * 300.68275 * 21 17 16 39 39 H 1.08995 * 108.75957 * 182.26734 * 21 17 16 40 40 H 1.09007 * 109.68995 * 101.64054 * 22 13 3 41 41 H 1.09001 * 109.69339 * 341.09787 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4426 -0.0235 5 6 1.5643 2.1436 1.2463 6 1 0.5874 2.6036 1.2676 7 6 2.3762 2.1977 2.3594 8 7 1.9284 2.7317 3.4746 9 14 4.1124 1.5126 2.2832 10 1 5.0396 2.5665 1.7984 11 1 4.5301 1.0709 3.6380 12 1 4.1478 0.3559 1.3525 13 7 1.5248 2.1440 -1.1833 14 6 1.8382 1.3978 -2.4222 15 6 1.5938 2.2137 -3.7044 16 6 0.3163 3.0089 -3.6591 17 6 0.6245 4.4178 -3.1045 18 1 1.5398 4.7891 -3.5654 19 8 -0.4526 5.2958 -3.4380 20 6 -0.3159 5.9249 -4.7138 21 6 0.7938 4.4013 -1.6557 22 6 1.9709 3.5162 -1.2061 23 1 -0.3633 0.5711 0.8544 24 1 -0.3632 0.4545 -0.9218 25 1 -0.3634 -1.0254 0.0673 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.4997 2.7701 4.2576 29 1 1.2203 0.5004 -2.4558 30 1 2.8855 1.0973 -2.3933 31 1 1.5523 1.5305 -4.5526 32 1 2.4290 2.8989 -3.8490 33 1 -0.4018 2.5095 -3.0089 34 1 -0.0963 3.0944 -4.6644 35 1 -0.2697 5.1627 -5.4916 36 1 -1.1731 6.5743 -4.8923 37 1 0.5989 6.5172 -4.7306 38 1 -0.1224 4.0278 -1.1984 39 1 0.9683 5.4207 -1.3116 40 1 2.7987 3.6217 -1.9074 41 1 2.2943 3.8139 -0.2086 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692037025.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:55 Heat of formation + Delta-G solvation = -50.143361 kcal Electronic energy + Delta-G solvation = -18994.695013 eV Core-core repulsion = 16295.413808 eV Total energy + Delta-G solvation = -2699.281205 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.28114 -37.33570 -34.49937 -32.13855 -31.84992 -30.85554 -27.25501 -26.70830 -24.82607 -24.23726 -22.64220 -20.27000 -20.15503 -18.47824 -16.77981 -16.54583 -15.87357 -15.08196 -14.78890 -14.26797 -14.08645 -13.78545 -13.31526 -13.10509 -12.71497 -12.57231 -12.39689 -11.90355 -11.81273 -11.36373 -11.02239 -11.00324 -10.80784 -10.70615 -10.62292 -10.36038 -10.13050 -10.08049 -9.90128 -9.77072 -9.58915 -9.23679 -8.90688 -8.55831 -7.12113 -6.07509 -4.04718 3.24444 3.34605 3.36061 3.96957 4.39552 4.77351 4.96629 5.14383 5.29014 5.31302 5.38864 5.50009 5.53247 5.66472 5.77398 5.81452 5.91837 6.08136 6.11422 6.16208 6.25526 6.30500 6.37239 6.43946 6.48649 6.53172 6.66728 6.76793 6.83348 6.93589 7.02435 7.10438 7.22898 7.45426 7.49045 7.70389 8.10390 8.31293 8.69816 9.06036 9.56642 11.05224 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027980 B = 0.007581 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.459385 B = 3692.331469 C = 4043.798406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.110 4.110 3 C 0.186 3.814 4 H -0.002 1.002 5 C -0.492 4.492 6 H 0.084 0.916 7 C 0.071 3.929 8 N -0.896 5.896 9 Si 0.868 3.132 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.533 5.533 14 C 0.058 3.942 15 C -0.115 4.115 16 C -0.128 4.128 17 C 0.102 3.898 18 H 0.044 0.956 19 O -0.389 6.389 20 C 0.033 3.967 21 C -0.115 4.115 22 C 0.078 3.922 23 H 0.067 0.933 24 H 0.050 0.950 25 H 0.021 0.979 26 H 0.026 0.974 27 H 0.050 0.950 28 H 0.263 0.737 29 H 0.068 0.932 30 H 0.018 0.982 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.036 0.964 36 H 0.079 0.921 37 H 0.036 0.964 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.019 0.981 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.359 0.968 -14.427 14.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.148 4.148 3 C 0.080 3.920 4 H 0.016 0.984 5 C -0.530 4.530 6 H 0.102 0.898 7 C -0.131 4.131 8 N -0.534 5.534 9 Si 0.695 3.305 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 N -0.258 5.258 14 C -0.069 4.069 15 C -0.153 4.153 16 C -0.166 4.166 17 C 0.045 3.955 18 H 0.063 0.937 19 O -0.308 6.308 20 C -0.064 4.064 21 C -0.154 4.154 22 C -0.051 4.051 23 H 0.086 0.914 24 H 0.069 0.931 25 H 0.040 0.960 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.055 0.945 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.037 0.963 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.937 1.051 -14.069 14.139 hybrid contribution 2.149 -0.422 -0.273 2.208 sum 1.212 0.628 -14.342 14.407 Atomic orbital electron populations 1.21496 0.95823 0.98315 1.02699 1.21696 0.96905 0.97769 0.98436 1.19822 0.92028 0.91274 0.88905 0.98425 1.20869 1.03990 1.34425 0.93740 0.89825 1.24995 0.97703 0.94873 0.95494 1.69890 1.36543 1.45222 1.01722 0.87013 0.86110 0.80087 0.77259 1.20490 1.21479 1.19124 1.60787 1.62316 1.01435 1.01289 1.22400 0.97912 0.97011 0.89614 1.21306 0.97651 0.98869 0.97508 1.21740 0.98527 0.95867 1.00473 1.21213 0.88119 0.88885 0.97233 0.93747 1.87973 1.46483 1.61299 1.35028 1.22697 1.01229 0.96503 0.85995 1.20532 1.01854 0.99823 0.93160 1.21516 0.93136 0.88809 1.01605 0.91410 0.93118 0.96014 0.95492 0.93153 0.92691 0.91390 0.96336 0.92195 0.92976 0.89827 0.92853 0.94507 0.90211 0.94544 0.89925 0.92407 0.96322 0.88636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.41 37.16 0.35 -2.15 16 2 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 3 C 0.19 4.23 1.32 -68.86 -0.09 4.14 16 4 H 0.00 -0.04 5.27 -51.93 -0.27 -0.32 16 5 C -0.49 -13.03 6.19 -34.44 -0.21 -13.24 16 6 H 0.08 2.47 7.94 -52.49 -0.42 2.05 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -26.54 13.96 55.43 0.77 -25.77 16 9 Si 0.87 21.07 27.06 -169.99 -4.60 16.47 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.27 6.72 56.52 0.38 -5.89 16 13 N -0.53 -10.57 3.17 -228.00 -0.72 -11.29 16 14 C 0.06 0.98 4.33 -2.75 -0.01 0.97 16 15 C -0.12 -1.61 5.28 -27.48 -0.14 -1.76 16 16 C -0.13 -1.85 5.24 -27.17 -0.14 -2.00 16 17 C 0.10 1.57 2.16 -29.31 -0.06 1.51 16 18 H 0.04 0.64 7.22 -51.93 -0.37 0.26 16 19 O -0.39 -6.01 10.27 -35.23 -0.36 -6.37 16 20 C 0.03 0.37 10.76 101.05 1.09 1.46 16 21 C -0.12 -2.05 4.94 -29.59 -0.15 -2.19 16 22 C 0.08 1.51 5.09 -4.70 -0.02 1.49 16 23 H 0.07 1.51 7.05 -51.93 -0.37 1.15 16 24 H 0.05 0.97 6.97 -51.93 -0.36 0.61 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.51 6.65 -51.93 -0.35 0.16 16 27 H 0.05 1.11 8.14 -51.92 -0.42 0.69 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.07 1.13 6.25 -51.93 -0.32 0.80 16 30 H 0.02 0.32 8.02 -51.93 -0.42 -0.10 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.71 6.66 -51.93 -0.35 0.37 16 33 H 0.08 1.37 7.79 -51.93 -0.40 0.96 16 34 H 0.05 0.69 7.49 -51.93 -0.39 0.30 16 35 H 0.04 0.37 7.55 -51.93 -0.39 -0.02 16 36 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 37 H 0.04 0.37 8.07 -51.93 -0.42 -0.04 16 38 H 0.08 1.65 8.08 -51.93 -0.42 1.23 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.33 6.79 -51.92 -0.35 -0.02 16 41 H 0.10 2.13 6.43 -51.93 -0.33 1.79 16 LS Contribution 303.99 15.07 4.58 4.58 Total: -1.00 -28.31 303.99 -7.17 -35.48 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -7.21 Total: -0.75 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 0.37 Total: -12.35 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.05 Total: -37.06 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.36 Total: -6.37 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.60 Total: 16.47 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.31 -7.17 -35.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692037025.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.665 kcal (2) G-P(sol) polarization free energy of solvation -28.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds