Wall clock time and date at job start Sun Mar 29 2020 23:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47110 * 2 1 4 4 H 1.08999 * 109.46876 * 181.30765 * 3 2 1 5 5 C 1.50701 * 109.47454 * 61.30486 * 3 2 1 6 6 H 1.08000 * 120.00036 * 274.68544 * 5 3 2 7 7 C 1.37877 * 119.99960 * 94.67780 * 5 3 2 8 8 N 1.31509 * 119.99891 * 184.46746 * 7 5 3 9 9 Si 1.86801 * 120.00068 * 4.47491 * 7 5 3 10 10 H 1.48503 * 109.47158 * 87.56418 * 9 7 5 11 11 H 1.48496 * 109.47139 * 207.56498 * 9 7 5 12 12 H 1.48504 * 109.47297 * 327.56563 * 9 7 5 13 13 N 1.46895 * 109.47001 * 301.30408 * 3 2 1 14 14 C 1.47982 * 111.06078 * 306.60107 * 13 3 2 15 15 C 1.53925 * 113.35862 * 192.20963 * 14 13 3 16 16 C 1.50540 * 112.93380 * 317.73609 * 15 14 13 17 17 C 1.54515 * 108.85783 * 91.75618 * 16 15 14 18 18 H 1.09001 * 109.04314 * 43.31372 * 17 16 15 19 19 O 1.42903 * 109.03910 * 162.18267 * 17 16 15 20 20 C 1.42899 * 113.99954 * 272.17110 * 19 17 16 21 21 C 1.45878 * 111.67560 * 282.74555 * 17 16 15 22 22 C 1.44307 * 111.00004 * 179.16370 * 13 3 2 23 23 H 1.09000 * 109.47073 * 303.75822 * 1 2 3 24 24 H 1.09003 * 109.46590 * 63.75317 * 1 2 3 25 25 H 1.08996 * 109.47434 * 183.75283 * 1 2 3 26 26 H 1.09000 * 109.47372 * 239.99600 * 2 1 3 27 27 H 1.09007 * 109.46673 * 119.99336 * 2 1 3 28 28 H 0.97005 * 119.99957 * 180.02562 * 8 7 5 29 29 H 1.09003 * 108.71710 * 71.19871 * 14 13 3 30 30 H 1.09001 * 108.68069 * 313.20165 * 14 13 3 31 31 H 1.08996 * 108.78726 * 196.84157 * 15 14 13 32 32 H 1.08995 * 108.78710 * 78.62915 * 15 14 13 33 33 H 1.08994 * 109.57463 * 331.93917 * 16 15 14 34 34 H 1.09005 * 109.56828 * 211.56813 * 16 15 14 35 35 H 1.08993 * 109.47312 * 59.99661 * 20 19 17 36 36 H 1.09008 * 109.46672 * 179.97438 * 20 19 17 37 37 H 1.09001 * 109.46560 * 299.99108 * 20 19 17 38 38 H 1.09005 * 108.84256 * 300.68275 * 21 17 16 39 39 H 1.08995 * 108.75957 * 182.26734 * 21 17 16 40 40 H 1.09007 * 109.68995 * 101.64054 * 22 13 3 41 41 H 1.09001 * 109.69339 * 341.09787 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4426 -0.0235 5 6 1.5643 2.1436 1.2463 6 1 0.5874 2.6036 1.2676 7 6 2.3762 2.1977 2.3594 8 7 1.9284 2.7317 3.4746 9 14 4.1124 1.5126 2.2832 10 1 5.0396 2.5665 1.7984 11 1 4.5301 1.0709 3.6380 12 1 4.1478 0.3559 1.3525 13 7 1.5248 2.1440 -1.1833 14 6 1.8382 1.3978 -2.4222 15 6 1.5938 2.2137 -3.7044 16 6 0.3163 3.0089 -3.6591 17 6 0.6245 4.4178 -3.1045 18 1 1.5398 4.7891 -3.5654 19 8 -0.4526 5.2958 -3.4380 20 6 -0.3159 5.9249 -4.7138 21 6 0.7938 4.4013 -1.6557 22 6 1.9709 3.5162 -1.2061 23 1 -0.3633 0.5711 0.8544 24 1 -0.3632 0.4545 -0.9218 25 1 -0.3634 -1.0254 0.0673 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.4997 2.7701 4.2576 29 1 1.2203 0.5004 -2.4558 30 1 2.8855 1.0973 -2.3933 31 1 1.5523 1.5305 -4.5526 32 1 2.4290 2.8989 -3.8490 33 1 -0.4018 2.5095 -3.0089 34 1 -0.0963 3.0944 -4.6644 35 1 -0.2697 5.1627 -5.4916 36 1 -1.1731 6.5743 -4.8923 37 1 0.5989 6.5172 -4.7306 38 1 -0.1224 4.0278 -1.1984 39 1 0.9683 5.4207 -1.3116 40 1 2.7987 3.6217 -1.9074 41 1 2.2943 3.8139 -0.2086 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692037025.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:55 Heat of formation + Delta-G solvation = -68.061737 kcal Electronic energy + Delta-G solvation = -18995.472012 eV Core-core repulsion = 16295.413808 eV Total energy + Delta-G solvation = -2700.058204 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.62261 -38.71807 -35.99740 -34.11372 -33.23861 -32.35188 -29.06520 -27.73058 -26.34178 -25.64108 -24.31760 -21.81515 -21.48154 -20.05333 -18.78429 -17.76009 -17.35336 -16.36311 -16.17414 -15.70228 -15.58058 -15.42487 -14.89695 -14.52904 -14.38408 -14.02388 -13.88711 -13.24054 -13.04137 -12.91813 -12.73322 -12.57227 -12.53435 -12.13054 -11.89856 -11.82445 -11.71479 -11.63345 -11.51397 -11.35034 -11.24335 -10.80191 -10.66568 -10.35191 -8.70865 -8.23049 -6.22987 1.30894 1.34116 1.43293 2.34937 2.86942 3.06128 3.39444 3.77672 3.98970 4.20416 4.29131 4.30233 4.41258 4.52728 4.57060 4.57839 4.61269 4.65393 4.71906 4.76886 4.87160 4.88418 5.00006 5.02628 5.10988 5.18180 5.22470 5.24722 5.33179 5.40161 5.47609 5.50201 5.53429 5.74501 5.80600 6.23019 6.40214 6.62601 6.81418 6.91772 7.41858 8.93791 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027980 B = 0.007581 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.459385 B = 3692.331469 C = 4043.798406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.109 4.109 3 C 0.189 3.811 4 H -0.008 1.008 5 C -0.477 4.477 6 H 0.037 0.963 7 C 0.013 3.987 8 N -0.947 5.947 9 Si 0.929 3.071 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.248 1.248 13 N -0.542 5.542 14 C 0.055 3.945 15 C -0.109 4.109 16 C -0.122 4.122 17 C 0.105 3.895 18 H 0.062 0.938 19 O -0.415 6.415 20 C 0.025 3.975 21 C -0.105 4.105 22 C 0.083 3.917 23 H 0.030 0.970 24 H 0.056 0.944 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.037 0.963 28 H 0.263 0.737 29 H 0.073 0.927 30 H 0.022 0.978 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.046 0.954 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.041 0.959 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.783 -0.084 -17.707 17.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.148 4.148 3 C 0.081 3.919 4 H 0.010 0.990 5 C -0.516 4.516 6 H 0.055 0.945 7 C -0.184 4.184 8 N -0.588 5.588 9 Si 0.754 3.246 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.172 1.172 13 N -0.267 5.267 14 C -0.073 4.073 15 C -0.147 4.147 16 C -0.160 4.160 17 C 0.048 3.952 18 H 0.080 0.920 19 O -0.335 6.335 20 C -0.071 4.071 21 C -0.143 4.143 22 C -0.046 4.046 23 H 0.049 0.951 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.040 0.960 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.200 -0.005 -17.388 17.389 hybrid contribution 1.675 -0.021 0.691 1.812 sum 1.875 -0.026 -16.697 16.802 Atomic orbital electron populations 1.21372 0.95233 0.99397 1.01328 1.21652 0.97404 0.96415 0.99291 1.19678 0.91576 0.92178 0.88422 0.99007 1.20950 1.01815 1.33223 0.95585 0.94495 1.25754 1.01861 0.95668 0.95088 1.70046 1.38239 1.47864 1.02683 0.86012 0.81080 0.80031 0.77453 1.19846 1.21584 1.17184 1.60654 1.62474 1.01595 1.01969 1.22534 0.98201 0.97368 0.89149 1.21281 0.97446 0.99231 0.96709 1.21674 0.98413 0.94863 1.01052 1.21097 0.89057 0.89952 0.95135 0.91961 1.87934 1.46549 1.61648 1.37378 1.22941 1.02513 0.97116 0.84493 1.20390 0.99619 0.98904 0.95401 1.21391 0.94381 0.88900 0.99975 0.95120 0.92455 0.93299 0.92352 0.94411 0.92827 0.90847 0.95955 0.89131 0.92119 0.92227 0.90541 0.92925 0.88783 0.93520 0.93159 0.92872 0.94100 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.53 9.41 71.98 0.68 -3.85 16 2 C -0.11 -4.43 5.15 30.60 0.16 -4.27 16 3 C 0.19 8.52 1.32 44.17 0.06 8.58 16 4 H -0.01 -0.35 5.27 -2.39 -0.01 -0.36 16 5 C -0.48 -26.34 6.19 25.60 0.16 -26.18 16 6 H 0.04 2.34 7.94 -2.91 -0.02 2.31 16 7 C 0.01 0.76 5.47 84.66 0.46 1.22 16 8 N -0.95 -58.80 13.96 21.45 0.30 -58.50 16 9 Si 0.93 43.92 27.06 68.60 1.86 45.77 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.25 -10.90 6.72 99.48 0.67 -10.23 16 13 N -0.54 -21.12 3.17 -875.26 -2.77 -23.90 16 14 C 0.05 1.66 4.33 86.41 0.37 2.04 16 15 C -0.11 -2.59 5.28 30.11 0.16 -2.43 16 16 C -0.12 -3.17 5.24 30.31 0.16 -3.01 16 17 C 0.10 3.01 2.16 28.93 0.06 3.07 16 18 H 0.06 1.58 7.22 -2.39 -0.02 1.56 16 19 O -0.42 -12.18 10.27 -148.98 -1.53 -13.71 16 20 C 0.03 0.50 10.76 113.37 1.22 1.72 16 21 C -0.10 -3.76 4.94 28.74 0.14 -3.61 16 22 C 0.08 3.18 5.09 87.12 0.44 3.63 16 23 H 0.03 1.39 7.05 -2.39 -0.02 1.38 16 24 H 0.06 2.13 6.97 -2.39 -0.02 2.11 16 25 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.06 2.02 6.65 -2.39 -0.02 2.00 16 27 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 29 H 0.07 2.16 6.25 -2.39 -0.01 2.15 16 30 H 0.02 0.68 8.02 -2.39 -0.02 0.66 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 32 H 0.06 1.37 6.66 -2.39 -0.02 1.36 16 33 H 0.06 1.85 7.79 -2.39 -0.02 1.84 16 34 H 0.08 1.65 7.49 -2.38 -0.02 1.64 16 35 H 0.05 0.87 7.55 -2.39 -0.02 0.85 16 36 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.05 0.82 8.07 -2.39 -0.02 0.80 16 38 H 0.05 2.10 8.08 -2.38 -0.02 2.08 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.04 1.38 6.79 -2.38 -0.02 1.37 16 41 H 0.06 2.59 6.43 -2.39 -0.02 2.57 16 Total: -1.00 -64.11 303.99 2.86 -61.24 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.94 Total: 12.19 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 4.07 Total: -23.10 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -2.47 Total: -82.39 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -1.53 Total: -13.71 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.86 Total: 45.77 kcal Total: -64.11 2.86 -61.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692037025.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.820 kcal (2) G-P(sol) polarization free energy of solvation -64.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds