Wall clock time and date at job start Sun Mar 29 2020 23:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46926 * 2 1 4 4 H 1.08994 * 109.47315 * 54.82482 * 3 2 1 5 5 C 1.50697 * 109.47328 * 174.82968 * 3 2 1 6 6 H 1.07998 * 120.00316 * 114.65036 * 5 3 2 7 7 C 1.37884 * 120.00012 * 294.65241 * 5 3 2 8 8 N 1.31517 * 119.99592 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00096 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47028 * 359.97438 * 9 7 5 11 11 H 1.48509 * 109.47036 * 119.99985 * 9 7 5 12 12 H 1.48491 * 109.47173 * 239.99601 * 9 7 5 13 13 N 1.46902 * 109.46900 * 294.82459 * 3 2 1 14 14 C 1.48555 * 111.00170 * 299.29759 * 13 3 2 15 15 C 1.54384 * 104.59243 * 200.95884 * 14 13 3 16 16 C 1.54254 * 105.06325 * 23.84908 * 15 14 13 17 17 H 1.08998 * 110.32779 * 241.00381 * 16 15 14 18 18 O 1.42905 * 110.32449 * 118.89345 * 16 15 14 19 19 C 1.42900 * 113.99344 * 91.45911 * 18 16 15 20 20 C 1.52998 * 109.46998 * 150.00283 * 19 18 16 21 21 C 1.53002 * 109.46619 * 269.99560 * 19 18 16 22 22 C 1.48552 * 110.99987 * 183.87212 * 13 3 2 23 23 H 1.09001 * 109.46629 * 175.30551 * 1 2 3 24 24 H 1.08994 * 109.47587 * 295.30450 * 1 2 3 25 25 H 1.08994 * 109.47002 * 55.30885 * 1 2 3 26 26 H 1.08993 * 109.47796 * 239.99668 * 2 1 3 27 27 H 1.09001 * 109.47011 * 119.99466 * 2 1 3 28 28 H 0.96998 * 120.00118 * 180.02562 * 8 7 5 29 29 H 1.09000 * 110.41685 * 82.17722 * 14 13 3 30 30 H 1.09003 * 110.50838 * 319.78420 * 14 13 3 31 31 H 1.08997 * 110.32237 * 264.95015 * 15 14 13 32 32 H 1.09003 * 110.40872 * 142.79308 * 15 14 13 33 33 H 1.08990 * 109.47620 * 29.99470 * 19 18 16 34 34 H 1.08994 * 109.47235 * 179.97438 * 20 19 18 35 35 H 1.09004 * 109.47123 * 299.99559 * 20 19 18 36 36 H 1.09002 * 109.47224 * 59.99357 * 20 19 18 37 37 H 1.09001 * 109.46919 * 60.00523 * 21 19 18 38 38 H 1.09005 * 109.47118 * 180.02562 * 21 19 18 39 39 H 1.09002 * 109.47388 * 300.00511 * 21 19 18 40 40 H 1.08994 * 110.41444 * 40.26418 * 22 13 3 41 41 H 1.09002 * 110.41736 * 277.81932 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6029 1.9824 0.8399 5 6 3.5414 1.4446 0.1280 6 1 4.1522 1.8097 -0.6844 7 6 4.1356 0.9803 1.2824 8 7 3.3917 0.5361 2.2719 9 14 5.9968 0.9821 1.4409 10 1 6.5989 1.5272 0.1977 11 1 6.3944 1.8268 2.5958 12 1 6.4767 -0.4067 1.6550 13 7 1.6549 2.0980 -1.2570 14 6 2.2475 1.3981 -2.4257 15 6 2.2290 2.4474 -3.5580 16 6 2.2062 3.8121 -2.8394 17 1 1.3025 4.3627 -3.1009 18 8 3.3665 4.5728 -3.1818 19 6 3.1876 5.4284 -4.3123 20 6 4.0845 6.6594 -4.1672 21 6 3.5623 4.6721 -5.5885 22 6 2.2128 3.4726 -1.3333 23 1 -0.3632 -1.0243 -0.0841 24 1 -0.3634 0.4392 0.9290 25 1 -0.3633 0.5849 -0.8449 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8096 0.2098 3.0842 29 1 1.6419 0.5337 -2.6985 30 1 3.2706 1.0911 -2.2085 31 1 1.3357 2.3272 -4.1709 32 1 3.1243 2.3584 -4.1734 33 1 2.1455 5.7427 -4.3690 34 1 3.9484 7.3118 -5.0296 35 1 3.8176 7.1982 -3.2580 36 1 5.1266 6.3451 -4.1106 37 1 2.9234 3.7951 -5.6919 38 1 3.4263 5.3249 -6.4509 39 1 4.6045 4.3578 -5.5319 40 1 3.2306 3.4920 -0.9438 41 1 1.5812 4.1705 -0.7836 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701663374.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:15 Heat of formation + Delta-G solvation = -55.367629 kcal Electronic energy + Delta-G solvation = -18600.212719 eV Core-core repulsion = 15900.704973 eV Total energy + Delta-G solvation = -2699.507746 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.03937 -37.16047 -33.91598 -32.22345 -31.44210 -29.40719 -27.46369 -27.18408 -25.91264 -23.06664 -21.41845 -21.06920 -20.21790 -18.88710 -16.53623 -16.38204 -15.51298 -14.97349 -14.56494 -14.16553 -13.72614 -13.31752 -12.96192 -12.77896 -12.40249 -12.25185 -12.21623 -12.13375 -11.87415 -11.44637 -11.26384 -11.04566 -10.91081 -10.69013 -10.60872 -10.53315 -10.39887 -10.03453 -9.88280 -9.68424 -9.49978 -9.13995 -9.08711 -8.34559 -7.22500 -5.98318 -4.08763 3.28560 3.37210 3.42315 3.90708 4.43214 4.94790 5.07090 5.23422 5.25614 5.28391 5.33255 5.40099 5.57333 5.58444 5.74423 5.81610 5.84371 5.97791 6.17463 6.21586 6.29970 6.32728 6.38301 6.45915 6.60263 6.65401 6.66933 6.83663 6.89218 7.04884 7.17859 7.26526 7.56127 7.71211 7.75124 7.94233 8.12788 8.22132 8.43240 9.01547 9.57889 11.03588 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021408 B = 0.007606 C = 0.006136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.616638 B = 3680.349930 C = 4562.144808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C 0.202 3.798 4 H 0.044 0.956 5 C -0.542 4.542 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.507 5.507 14 C 0.038 3.962 15 C -0.147 4.147 16 C 0.086 3.914 17 H 0.059 0.941 18 O -0.372 6.372 19 C 0.080 3.920 20 C -0.149 4.149 21 C -0.176 4.176 22 C 0.040 3.960 23 H 0.025 0.975 24 H 0.040 0.960 25 H 0.050 0.950 26 H 0.033 0.967 27 H 0.082 0.918 28 H 0.260 0.740 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.125 6.753 -11.765 13.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.144 4.144 3 C 0.095 3.905 4 H 0.062 0.938 5 C -0.581 4.581 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.232 5.232 14 C -0.090 4.090 15 C -0.185 4.185 16 C 0.027 3.973 17 H 0.077 0.923 18 O -0.291 6.291 19 C 0.022 3.978 20 C -0.207 4.207 21 C -0.233 4.233 22 C -0.089 4.089 23 H 0.045 0.955 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.101 0.899 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.531 6.657 -11.475 13.505 hybrid contribution 1.736 -0.123 0.090 1.742 sum -0.795 6.535 -11.385 13.151 Atomic orbital electron populations 1.21735 0.98730 0.98584 1.00747 1.21526 0.92400 0.99114 1.01403 1.19405 0.93396 0.91177 0.86529 0.93826 1.21753 0.92715 1.42358 1.01268 0.92077 1.24910 0.97771 0.94981 0.95741 1.69928 1.34732 1.42178 1.05561 0.86643 0.86315 0.77621 0.78124 1.19769 1.21020 1.21062 1.65784 1.52199 1.00968 1.04265 1.22912 0.99706 0.95931 0.90465 1.22925 1.01114 0.96023 0.98480 1.23020 0.86649 0.91153 0.96440 0.92279 1.88020 1.36570 1.57230 1.47278 1.22077 0.98648 0.90549 0.86535 1.21861 1.00553 0.96339 1.01910 1.22385 1.02708 1.00911 0.97315 1.22978 1.01272 0.92558 0.92081 0.95545 0.94102 0.93133 0.94848 0.89942 0.92985 0.91770 0.92239 0.92081 0.91286 0.92616 0.91777 0.92037 0.91921 0.92149 0.92322 0.91970 0.90715 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.86 37.16 0.37 -2.50 16 2 C -0.11 -2.51 5.15 -26.73 -0.14 -2.65 16 3 C 0.20 5.01 1.80 -68.86 -0.12 4.88 16 4 H 0.04 1.21 8.14 -51.93 -0.42 0.79 16 5 C -0.54 -14.58 6.42 -34.44 -0.22 -14.80 16 6 H 0.06 1.68 5.70 -52.49 -0.30 1.38 16 7 C 0.07 1.88 5.30 -17.82 -0.09 1.79 16 8 N -0.89 -25.14 11.71 55.43 0.65 -24.49 16 9 Si 0.88 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.51 -10.90 4.81 -223.41 -1.08 -11.98 16 14 C 0.04 0.76 5.16 -2.18 -0.01 0.75 16 15 C -0.15 -2.44 5.85 -25.35 -0.15 -2.59 16 16 C 0.09 1.45 3.52 -25.35 -0.09 1.37 16 17 H 0.06 0.91 7.43 -51.93 -0.39 0.52 16 18 O -0.37 -6.30 9.61 -35.23 -0.34 -6.64 16 19 C 0.08 1.03 3.34 -26.73 -0.09 0.94 16 20 C -0.15 -1.66 9.56 37.16 0.36 -1.31 16 21 C -0.18 -2.00 9.10 37.16 0.34 -1.66 16 22 C 0.04 0.81 6.02 -2.18 -0.01 0.79 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.99 7.63 -51.93 -0.40 0.60 16 26 H 0.03 0.77 6.70 -51.93 -0.35 0.42 16 27 H 0.08 2.18 6.41 -51.93 -0.33 1.85 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.06 1.22 7.55 -51.93 -0.39 0.83 16 30 H 0.06 1.32 6.09 -51.93 -0.32 1.01 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.11 6.96 -51.93 -0.36 0.75 16 33 H 0.06 0.66 7.40 -51.93 -0.38 0.28 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.70 6.56 -51.93 -0.34 0.36 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.74 5.99 -51.93 -0.31 1.43 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 312.20 15.07 4.70 4.70 Total: -1.00 -27.99 312.20 -8.18 -36.17 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.23 Total: 0.79 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: 0.13 Total: -14.98 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.43 Total: -36.47 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.34 Total: -6.64 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.99 -8.18 -36.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701663374.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.194 kcal (2) G-P(sol) polarization free energy of solvation -27.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds