Wall clock time and date at job start Sun Mar 29 2020 23:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46926 * 2 1 4 4 H 1.08994 * 109.47315 * 54.82482 * 3 2 1 5 5 C 1.50697 * 109.47328 * 174.82968 * 3 2 1 6 6 H 1.07998 * 120.00316 * 114.65036 * 5 3 2 7 7 C 1.37884 * 120.00012 * 294.65241 * 5 3 2 8 8 N 1.31517 * 119.99592 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00096 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47028 * 359.97438 * 9 7 5 11 11 H 1.48509 * 109.47036 * 119.99985 * 9 7 5 12 12 H 1.48491 * 109.47173 * 239.99601 * 9 7 5 13 13 N 1.46902 * 109.46900 * 294.82459 * 3 2 1 14 14 C 1.48555 * 111.00170 * 299.29759 * 13 3 2 15 15 C 1.54384 * 104.59243 * 200.95884 * 14 13 3 16 16 C 1.54254 * 105.06325 * 23.84908 * 15 14 13 17 17 H 1.08998 * 110.32779 * 241.00381 * 16 15 14 18 18 O 1.42905 * 110.32449 * 118.89345 * 16 15 14 19 19 C 1.42900 * 113.99344 * 91.45911 * 18 16 15 20 20 C 1.52998 * 109.46998 * 150.00283 * 19 18 16 21 21 C 1.53002 * 109.46619 * 269.99560 * 19 18 16 22 22 C 1.48552 * 110.99987 * 183.87212 * 13 3 2 23 23 H 1.09001 * 109.46629 * 175.30551 * 1 2 3 24 24 H 1.08994 * 109.47587 * 295.30450 * 1 2 3 25 25 H 1.08994 * 109.47002 * 55.30885 * 1 2 3 26 26 H 1.08993 * 109.47796 * 239.99668 * 2 1 3 27 27 H 1.09001 * 109.47011 * 119.99466 * 2 1 3 28 28 H 0.96998 * 120.00118 * 180.02562 * 8 7 5 29 29 H 1.09000 * 110.41685 * 82.17722 * 14 13 3 30 30 H 1.09003 * 110.50838 * 319.78420 * 14 13 3 31 31 H 1.08997 * 110.32237 * 264.95015 * 15 14 13 32 32 H 1.09003 * 110.40872 * 142.79308 * 15 14 13 33 33 H 1.08990 * 109.47620 * 29.99470 * 19 18 16 34 34 H 1.08994 * 109.47235 * 179.97438 * 20 19 18 35 35 H 1.09004 * 109.47123 * 299.99559 * 20 19 18 36 36 H 1.09002 * 109.47224 * 59.99357 * 20 19 18 37 37 H 1.09001 * 109.46919 * 60.00523 * 21 19 18 38 38 H 1.09005 * 109.47118 * 180.02562 * 21 19 18 39 39 H 1.09002 * 109.47388 * 300.00511 * 21 19 18 40 40 H 1.08994 * 110.41444 * 40.26418 * 22 13 3 41 41 H 1.09002 * 110.41736 * 277.81932 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6029 1.9824 0.8399 5 6 3.5414 1.4446 0.1280 6 1 4.1522 1.8097 -0.6844 7 6 4.1356 0.9803 1.2824 8 7 3.3917 0.5361 2.2719 9 14 5.9968 0.9821 1.4409 10 1 6.5989 1.5272 0.1977 11 1 6.3944 1.8268 2.5958 12 1 6.4767 -0.4067 1.6550 13 7 1.6549 2.0980 -1.2570 14 6 2.2475 1.3981 -2.4257 15 6 2.2290 2.4474 -3.5580 16 6 2.2062 3.8121 -2.8394 17 1 1.3025 4.3627 -3.1009 18 8 3.3665 4.5728 -3.1818 19 6 3.1876 5.4284 -4.3123 20 6 4.0845 6.6594 -4.1672 21 6 3.5623 4.6721 -5.5885 22 6 2.2128 3.4726 -1.3333 23 1 -0.3632 -1.0243 -0.0841 24 1 -0.3634 0.4392 0.9290 25 1 -0.3633 0.5849 -0.8449 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8096 0.2098 3.0842 29 1 1.6419 0.5337 -2.6985 30 1 3.2706 1.0911 -2.2085 31 1 1.3357 2.3272 -4.1709 32 1 3.1243 2.3584 -4.1734 33 1 2.1455 5.7427 -4.3690 34 1 3.9484 7.3118 -5.0296 35 1 3.8176 7.1982 -3.2580 36 1 5.1266 6.3451 -4.1106 37 1 2.9234 3.7951 -5.6919 38 1 3.4263 5.3249 -6.4509 39 1 4.6045 4.3578 -5.5319 40 1 3.2306 3.4920 -0.9438 41 1 1.5812 4.1705 -0.7836 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701663374.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:14 Heat of formation + Delta-G solvation = -72.614688 kcal Electronic energy + Delta-G solvation = -18600.960608 eV Core-core repulsion = 15900.704973 eV Total energy + Delta-G solvation = -2700.255635 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.49036 -38.61709 -35.62275 -33.77275 -33.04665 -31.00649 -29.03787 -28.18500 -27.72937 -24.93808 -22.93951 -22.23511 -21.68586 -20.72165 -18.49413 -17.71969 -17.11696 -16.46191 -16.03188 -15.71142 -15.20986 -14.77930 -14.72711 -14.23178 -13.89689 -13.78678 -13.43347 -13.28394 -13.16727 -12.97286 -12.85980 -12.80140 -12.47438 -12.33321 -12.18693 -11.95656 -11.81010 -11.68302 -11.56190 -11.47955 -11.25271 -11.00502 -10.47252 -10.37844 -9.09089 -8.08124 -6.26095 1.33132 1.36334 1.46747 2.38644 2.72031 3.13764 3.67239 3.82743 3.90149 4.07763 4.17717 4.22516 4.35476 4.54619 4.56537 4.67944 4.72005 4.77448 4.85426 4.87646 4.93408 4.95564 5.01205 5.05184 5.12770 5.18752 5.23105 5.29275 5.33244 5.37824 5.40329 5.46451 5.60079 5.75542 5.95895 6.14980 6.28249 6.40953 6.57006 6.93933 7.43011 8.90941 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021408 B = 0.007606 C = 0.006136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.616638 B = 3680.349930 C = 4562.144808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 C 0.208 3.792 4 H 0.007 0.993 5 C -0.546 4.546 6 H 0.049 0.951 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.943 3.057 10 H -0.275 1.275 11 H -0.280 1.280 12 H -0.278 1.278 13 N -0.503 5.503 14 C 0.037 3.963 15 C -0.135 4.135 16 C 0.096 3.904 17 H 0.084 0.916 18 O -0.399 6.399 19 C 0.069 3.931 20 C -0.148 4.148 21 C -0.172 4.172 22 C 0.036 3.964 23 H 0.049 0.951 24 H 0.033 0.967 25 H 0.060 0.940 26 H 0.035 0.965 27 H 0.051 0.949 28 H 0.262 0.738 29 H 0.075 0.925 30 H 0.028 0.972 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.050 0.950 40 H 0.037 0.963 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.646 7.382 -13.927 15.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.139 4.139 3 C 0.101 3.899 4 H 0.025 0.975 5 C -0.585 4.585 6 H 0.067 0.933 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.769 3.231 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.204 1.204 13 N -0.227 5.227 14 C -0.091 4.091 15 C -0.173 4.173 16 C 0.038 3.962 17 H 0.102 0.898 18 O -0.319 6.319 19 C 0.012 3.988 20 C -0.205 4.205 21 C -0.229 4.229 22 C -0.093 4.093 23 H 0.068 0.932 24 H 0.052 0.948 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.052 7.294 -13.652 15.776 hybrid contribution 1.900 -0.258 0.736 2.054 sum -1.152 7.035 -12.916 14.753 Atomic orbital electron populations 1.21599 0.95940 1.00261 1.00783 1.21367 0.94837 0.97776 0.99898 1.19166 0.92003 0.91729 0.87045 0.97537 1.21937 0.93972 1.41735 1.00898 0.93255 1.25584 1.01615 0.94990 0.95639 1.70034 1.36169 1.42973 1.05936 0.85738 0.81735 0.77771 0.77821 1.19981 1.20633 1.20350 1.65699 1.52029 1.01515 1.03434 1.22930 0.97857 0.97350 0.90957 1.22876 1.02816 0.94272 0.97365 1.22852 0.87850 0.91948 0.93571 0.89772 1.87996 1.36683 1.57957 1.49217 1.22408 1.00017 0.90585 0.85769 1.21884 0.99562 0.96075 1.02961 1.22351 1.01895 1.01232 0.97450 1.22978 0.98994 0.92134 0.95200 0.93163 0.94821 0.92118 0.94618 0.93041 0.92912 0.90711 0.95381 0.89124 0.90764 0.91073 0.88873 0.92694 0.92955 0.92306 0.89703 0.93081 0.94419 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 9.86 71.98 0.71 -4.41 16 2 C -0.10 -4.80 5.15 30.59 0.16 -4.64 16 3 C 0.21 10.63 1.80 44.17 0.08 10.71 16 4 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 5 C -0.55 -30.36 6.42 25.60 0.16 -30.20 16 6 H 0.05 2.82 5.70 -2.91 -0.02 2.80 16 7 C 0.02 1.22 5.30 84.66 0.45 1.66 16 8 N -0.91 -53.16 11.71 21.45 0.25 -52.91 16 9 Si 0.94 44.97 29.54 68.60 2.03 47.00 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 13 N -0.50 -21.62 4.81 -860.73 -4.14 -25.77 16 14 C 0.04 1.45 5.16 86.45 0.45 1.90 16 15 C -0.14 -4.16 5.85 31.49 0.18 -3.98 16 16 C 0.10 3.10 3.52 31.49 0.11 3.21 16 17 H 0.08 2.31 7.43 -2.39 -0.02 2.29 16 18 O -0.40 -13.01 9.61 -148.98 -1.43 -14.44 16 19 C 0.07 1.61 3.34 30.59 0.10 1.71 16 20 C -0.15 -2.97 9.56 71.98 0.69 -2.29 16 21 C -0.17 -3.41 9.10 71.98 0.66 -2.75 16 22 C 0.04 1.46 6.02 86.45 0.52 1.98 16 23 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.06 2.28 7.63 -2.39 -0.02 2.26 16 26 H 0.04 1.65 6.70 -2.39 -0.02 1.63 16 27 H 0.05 2.78 6.41 -2.39 -0.02 2.77 16 28 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.07 2.72 7.55 -2.39 -0.02 2.70 16 30 H 0.03 1.26 6.09 -2.39 -0.01 1.25 16 31 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.07 2.23 6.96 -2.39 -0.02 2.21 16 33 H 0.07 1.44 7.40 -2.39 -0.02 1.42 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 1.18 6.56 -2.39 -0.02 1.16 16 38 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.04 1.82 5.99 -2.39 -0.01 1.81 16 41 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -61.73 312.20 1.94 -59.79 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.98 Total: 13.43 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: 4.27 Total: -27.09 kcal Atomic # 7 Polarization: -74.78 SS G_CDS: -3.89 Total: -78.68 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -1.43 Total: -14.44 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -61.73 1.94 -59.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701663374.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.830 kcal (2) G-P(sol) polarization free energy of solvation -61.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds