Wall clock time and date at job start Sun Mar 29 2020 23:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46967 * 2 1 4 4 H 1.09001 * 109.47365 * 180.56263 * 3 2 1 5 5 C 1.50702 * 109.47195 * 300.56185 * 3 2 1 6 6 H 1.07997 * 120.00331 * 120.00208 * 5 3 2 7 7 C 1.37881 * 119.99588 * 299.99827 * 5 3 2 8 8 N 1.31507 * 120.00461 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99411 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47453 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47149 * 120.00471 * 9 7 5 12 12 H 1.48506 * 109.47084 * 240.00162 * 9 7 5 13 13 N 1.46893 * 109.47297 * 60.56242 * 3 2 1 14 14 C 1.48563 * 111.00096 * 61.38436 * 13 3 2 15 15 C 1.54378 * 104.59491 * 159.04405 * 14 13 3 16 16 C 1.54260 * 105.06029 * 336.14603 * 15 14 13 17 17 H 1.09000 * 110.32638 * 119.00496 * 16 15 14 18 18 O 1.42903 * 110.32641 * 241.10514 * 16 15 14 19 19 C 1.42898 * 113.99962 * 268.54755 * 18 16 15 20 20 C 1.53004 * 109.47042 * 89.99938 * 19 18 16 21 21 C 1.53007 * 109.46847 * 209.99616 * 19 18 16 22 22 C 1.48557 * 111.00497 * 176.80481 * 13 3 2 23 23 H 1.08997 * 109.47696 * 305.41275 * 1 2 3 24 24 H 1.09010 * 109.46916 * 65.41096 * 1 2 3 25 25 H 1.08996 * 109.47305 * 185.40940 * 1 2 3 26 26 H 1.09001 * 109.47425 * 240.00500 * 2 1 3 27 27 H 1.08997 * 109.47158 * 120.00194 * 2 1 3 28 28 H 0.96996 * 120.00295 * 180.02562 * 8 7 5 29 29 H 1.08997 * 110.40894 * 40.26315 * 14 13 3 30 30 H 1.09004 * 110.41277 * 277.81819 * 14 13 3 31 31 H 1.09003 * 110.32329 * 217.25184 * 15 14 13 32 32 H 1.09000 * 110.32739 * 95.04652 * 15 14 13 33 33 H 1.08992 * 109.47271 * 329.99804 * 19 18 16 34 34 H 1.09002 * 109.47119 * 59.99909 * 20 19 18 35 35 H 1.09004 * 109.47079 * 179.97438 * 20 19 18 36 36 H 1.08998 * 109.46796 * 299.99738 * 20 19 18 37 37 H 1.08994 * 109.46854 * 60.00074 * 21 19 18 38 38 H 1.09001 * 109.46561 * 180.02562 * 21 19 18 39 39 H 1.08994 * 109.46854 * 299.99965 * 21 19 18 40 40 H 1.09006 * 110.41300 * 82.17794 * 22 13 3 41 41 H 1.09005 * 110.50829 * 319.79029 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 -0.0101 5 6 1.5262 2.1570 -1.2234 6 1 0.9063 3.0347 -1.1158 7 6 1.8478 1.6900 -2.4803 8 7 2.6023 0.6209 -2.6114 9 14 1.2116 2.5760 -3.9968 10 1 0.3913 3.7420 -3.5812 11 1 2.3594 3.0449 -4.8140 12 1 0.3789 1.6456 -4.8008 13 7 1.5614 2.1311 1.2061 14 6 2.0763 1.4731 2.4345 15 6 1.9687 2.5555 3.5299 16 6 1.9846 3.8978 2.7700 17 1 1.0600 4.4461 2.9504 18 8 3.1110 4.6812 3.1696 19 6 2.8454 5.5682 4.2579 20 6 3.1358 4.8547 5.5799 21 6 3.7394 6.8041 4.1384 22 6 2.1004 3.5135 1.2793 23 1 -0.3634 0.5955 0.8375 24 1 -0.3633 0.4277 -0.9346 25 1 -0.3634 -1.0230 0.0969 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.8289 0.2926 -3.4956 29 1 3.1151 1.1725 2.2978 30 1 1.4607 0.6107 2.6905 31 1 2.8201 2.4941 4.2078 32 1 1.0355 2.4440 4.0820 33 1 1.7992 5.8726 4.2316 34 1 4.1821 4.5503 5.6063 35 1 2.9336 5.5315 6.4101 36 1 2.4989 3.9742 5.6650 37 1 3.5326 7.3124 3.1966 38 1 3.5371 7.4805 4.9689 39 1 4.7856 6.4996 4.1648 40 1 1.5030 4.1875 0.6654 41 1 3.1428 3.5342 0.9612 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701670282.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:17 Heat of formation + Delta-G solvation = -53.800574 kcal Electronic energy + Delta-G solvation = -18459.116674 eV Core-core repulsion = 15759.676881 eV Total energy + Delta-G solvation = -2699.439794 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.08519 -37.16049 -34.13420 -32.33663 -31.17102 -29.40845 -27.51666 -27.22623 -25.88416 -23.25478 -21.47344 -21.10015 -20.30214 -18.84688 -16.57118 -15.97350 -15.75748 -14.98526 -14.76296 -14.22942 -13.56898 -13.37906 -13.27533 -12.85291 -12.39631 -12.29976 -12.20214 -12.12709 -11.80193 -11.67254 -11.29270 -11.09759 -10.91918 -10.80094 -10.61798 -10.55007 -10.34917 -10.14705 -9.89282 -9.64987 -9.36590 -9.24621 -8.77955 -8.38656 -7.29982 -5.97231 -4.00419 3.31790 3.39869 3.44144 3.81915 4.44483 4.89065 5.00437 5.13212 5.19421 5.21681 5.28182 5.34987 5.50363 5.52738 5.67202 5.75117 5.78488 5.82958 6.09384 6.14031 6.21353 6.27186 6.42094 6.43490 6.49736 6.56207 6.66840 6.71016 6.81821 7.13654 7.23845 7.41833 7.54571 7.66613 7.74237 7.87108 8.11261 8.35441 8.57445 9.04574 9.63384 11.09583 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028755 B = 0.006258 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.513955 B = 4473.345656 C = 5141.102249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.109 4.109 3 C 0.207 3.793 4 H 0.000 1.000 5 C -0.494 4.494 6 H 0.061 0.939 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.499 5.499 14 C 0.034 3.966 15 C -0.146 4.146 16 C 0.082 3.918 17 H 0.064 0.936 18 O -0.374 6.374 19 C 0.080 3.920 20 C -0.176 4.176 21 C -0.150 4.150 22 C 0.054 3.946 23 H 0.045 0.955 24 H 0.054 0.946 25 H 0.014 0.986 26 H 0.091 0.909 27 H 0.012 0.988 28 H 0.259 0.741 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.371 6.651 13.024 14.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.148 4.148 3 C 0.100 3.900 4 H 0.018 0.982 5 C -0.533 4.533 6 H 0.079 0.921 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.224 5.224 14 C -0.095 4.095 15 C -0.184 4.184 16 C 0.024 3.976 17 H 0.082 0.918 18 O -0.293 6.293 19 C 0.022 3.978 20 C -0.233 4.233 21 C -0.207 4.207 22 C -0.074 4.074 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.033 0.967 26 H 0.109 0.891 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.692 6.511 12.746 14.330 hybrid contribution 0.394 0.318 -0.726 0.886 sum -0.298 6.829 12.020 13.828 Atomic orbital electron populations 1.21459 0.97287 0.97226 1.01822 1.21520 0.95234 0.97999 1.00008 1.19469 0.93092 0.91204 0.86223 0.98194 1.21062 1.30878 1.11771 0.89577 0.92087 1.24899 0.95256 0.95102 0.98886 1.69885 1.37363 1.23070 1.22926 0.86522 0.78590 0.79734 0.83073 1.19774 1.21211 1.21087 1.65514 1.53767 1.00691 1.02468 1.22972 0.98158 0.96824 0.91501 1.22910 1.01439 0.95771 0.98260 1.23089 0.87779 0.90949 0.95785 0.91807 1.87986 1.36049 1.54719 1.50568 1.22094 0.98605 0.90156 0.86958 1.22386 1.02720 1.01076 0.97144 1.21864 1.00476 0.96239 1.02105 1.22850 0.99594 0.93037 0.91934 0.93543 0.92656 0.96668 0.89088 0.96905 0.93104 0.94719 0.91021 0.91170 0.91591 0.92468 0.92003 0.92223 0.92151 0.91972 0.91703 0.91951 0.90047 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.47 37.16 0.35 -2.34 16 2 C -0.11 -2.65 5.25 -26.73 -0.14 -2.79 16 3 C 0.21 5.21 1.52 -68.87 -0.10 5.10 16 4 H 0.00 0.01 7.98 -51.93 -0.41 -0.40 16 5 C -0.49 -13.39 6.95 -34.44 -0.24 -13.63 16 6 H 0.06 1.67 7.16 -52.49 -0.38 1.30 16 7 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 8 N -0.89 -25.43 11.32 55.43 0.63 -24.81 16 9 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.50 -10.79 4.36 -223.41 -0.97 -11.77 16 14 C 0.03 0.64 5.40 -2.18 -0.01 0.62 16 15 C -0.15 -2.27 5.85 -25.35 -0.15 -2.42 16 16 C 0.08 1.35 3.52 -25.35 -0.09 1.26 16 17 H 0.06 0.97 7.43 -51.93 -0.39 0.58 16 18 O -0.37 -5.99 9.61 -35.23 -0.34 -6.32 16 19 C 0.08 0.97 3.34 -26.73 -0.09 0.88 16 20 C -0.18 -1.85 9.10 37.16 0.34 -1.52 16 21 C -0.15 -1.57 9.56 37.16 0.36 -1.21 16 22 C 0.05 1.10 5.52 -2.19 -0.01 1.09 16 23 H 0.05 1.00 7.46 -51.93 -0.39 0.61 16 24 H 0.05 1.33 7.40 -51.92 -0.38 0.95 16 25 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 2.45 6.08 -51.93 -0.32 2.14 16 27 H 0.01 0.28 6.95 -51.93 -0.36 -0.08 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.03 0.68 7.95 -51.93 -0.41 0.27 16 30 H 0.07 1.29 7.66 -51.93 -0.40 0.90 16 31 H 0.07 1.03 6.97 -51.93 -0.36 0.67 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.65 7.40 -51.93 -0.38 0.27 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.65 6.56 -51.93 -0.34 0.31 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 1.68 7.57 -51.93 -0.39 1.28 16 41 H 0.05 1.09 7.87 -51.93 -0.41 0.68 16 LS Contribution 314.67 15.07 4.74 4.74 Total: -1.00 -28.34 314.67 -8.26 -36.60 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -7.42 Total: -1.42 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: 0.12 Total: -13.41 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: -0.35 Total: -36.57 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.34 Total: -6.32 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.34 -8.26 -36.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701670282.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.198 kcal (2) G-P(sol) polarization free energy of solvation -28.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds