Wall clock time and date at job start Sun Mar 29 2020 23:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46967 * 2 1 4 4 H 1.09001 * 109.47365 * 180.56263 * 3 2 1 5 5 C 1.50702 * 109.47195 * 300.56185 * 3 2 1 6 6 H 1.07997 * 120.00331 * 120.00208 * 5 3 2 7 7 C 1.37881 * 119.99588 * 299.99827 * 5 3 2 8 8 N 1.31507 * 120.00461 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99411 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47453 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47149 * 120.00471 * 9 7 5 12 12 H 1.48506 * 109.47084 * 240.00162 * 9 7 5 13 13 N 1.46893 * 109.47297 * 60.56242 * 3 2 1 14 14 C 1.48563 * 111.00096 * 61.38436 * 13 3 2 15 15 C 1.54378 * 104.59491 * 159.04405 * 14 13 3 16 16 C 1.54260 * 105.06029 * 336.14603 * 15 14 13 17 17 H 1.09000 * 110.32638 * 119.00496 * 16 15 14 18 18 O 1.42903 * 110.32641 * 241.10514 * 16 15 14 19 19 C 1.42898 * 113.99962 * 268.54755 * 18 16 15 20 20 C 1.53004 * 109.47042 * 89.99938 * 19 18 16 21 21 C 1.53007 * 109.46847 * 209.99616 * 19 18 16 22 22 C 1.48557 * 111.00497 * 176.80481 * 13 3 2 23 23 H 1.08997 * 109.47696 * 305.41275 * 1 2 3 24 24 H 1.09010 * 109.46916 * 65.41096 * 1 2 3 25 25 H 1.08996 * 109.47305 * 185.40940 * 1 2 3 26 26 H 1.09001 * 109.47425 * 240.00500 * 2 1 3 27 27 H 1.08997 * 109.47158 * 120.00194 * 2 1 3 28 28 H 0.96996 * 120.00295 * 180.02562 * 8 7 5 29 29 H 1.08997 * 110.40894 * 40.26315 * 14 13 3 30 30 H 1.09004 * 110.41277 * 277.81819 * 14 13 3 31 31 H 1.09003 * 110.32329 * 217.25184 * 15 14 13 32 32 H 1.09000 * 110.32739 * 95.04652 * 15 14 13 33 33 H 1.08992 * 109.47271 * 329.99804 * 19 18 16 34 34 H 1.09002 * 109.47119 * 59.99909 * 20 19 18 35 35 H 1.09004 * 109.47079 * 179.97438 * 20 19 18 36 36 H 1.08998 * 109.46796 * 299.99738 * 20 19 18 37 37 H 1.08994 * 109.46854 * 60.00074 * 21 19 18 38 38 H 1.09001 * 109.46561 * 180.02562 * 21 19 18 39 39 H 1.08994 * 109.46854 * 299.99965 * 21 19 18 40 40 H 1.09006 * 110.41300 * 82.17794 * 22 13 3 41 41 H 1.09005 * 110.50829 * 319.79029 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 -0.0101 5 6 1.5262 2.1570 -1.2234 6 1 0.9063 3.0347 -1.1158 7 6 1.8478 1.6900 -2.4803 8 7 2.6023 0.6209 -2.6114 9 14 1.2116 2.5760 -3.9968 10 1 0.3913 3.7420 -3.5812 11 1 2.3594 3.0449 -4.8140 12 1 0.3789 1.6456 -4.8008 13 7 1.5614 2.1311 1.2061 14 6 2.0763 1.4731 2.4345 15 6 1.9687 2.5555 3.5299 16 6 1.9846 3.8978 2.7700 17 1 1.0600 4.4461 2.9504 18 8 3.1110 4.6812 3.1696 19 6 2.8454 5.5682 4.2579 20 6 3.1358 4.8547 5.5799 21 6 3.7394 6.8041 4.1384 22 6 2.1004 3.5135 1.2793 23 1 -0.3634 0.5955 0.8375 24 1 -0.3633 0.4277 -0.9346 25 1 -0.3634 -1.0230 0.0969 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.8289 0.2926 -3.4956 29 1 3.1151 1.1725 2.2978 30 1 1.4607 0.6107 2.6905 31 1 2.8201 2.4941 4.2078 32 1 1.0355 2.4440 4.0820 33 1 1.7992 5.8726 4.2316 34 1 4.1821 4.5503 5.6063 35 1 2.9336 5.5315 6.4101 36 1 2.4989 3.9742 5.6650 37 1 3.5326 7.3124 3.1966 38 1 3.5371 7.4805 4.9689 39 1 4.7856 6.4996 4.1648 40 1 1.5030 4.1875 0.6654 41 1 3.1428 3.5342 0.9612 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701670282.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:16 Heat of formation + Delta-G solvation = -70.950061 kcal Electronic energy + Delta-G solvation = -18459.860332 eV Core-core repulsion = 15759.676881 eV Total energy + Delta-G solvation = -2700.183451 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.47937 -38.60121 -35.87505 -33.68983 -32.91673 -31.00983 -29.02927 -28.20153 -27.71977 -25.16835 -22.94367 -22.24745 -21.73855 -20.66220 -18.23360 -17.60205 -17.30967 -16.53178 -16.11487 -15.71381 -15.18789 -14.88939 -14.78549 -14.25379 -13.98741 -13.68573 -13.49607 -13.33421 -13.19577 -12.93042 -12.84831 -12.81131 -12.42177 -12.40988 -12.28136 -11.98911 -11.77495 -11.66689 -11.57211 -11.46052 -11.19732 -10.81030 -10.48643 -10.42819 -9.13132 -8.08898 -6.18940 1.40124 1.42230 1.53488 2.42716 2.66265 3.20131 3.57937 3.75829 3.84456 4.06519 4.12603 4.21500 4.34338 4.39892 4.59249 4.63127 4.74132 4.76894 4.80684 4.85670 4.86016 4.91578 4.95043 4.99561 5.08626 5.13527 5.15378 5.26120 5.32255 5.37814 5.39506 5.47407 5.69273 5.74672 5.84849 6.20557 6.33491 6.44810 6.63942 6.92257 7.48628 8.97318 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028755 B = 0.006258 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.513955 B = 4473.345656 C = 5141.102249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.105 4.105 3 C 0.213 3.787 4 H -0.045 1.045 5 C -0.503 4.503 6 H 0.054 0.946 7 C 0.013 3.987 8 N -0.920 5.920 9 Si 0.953 3.047 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.279 1.279 13 N -0.501 5.501 14 C 0.030 3.970 15 C -0.132 4.132 16 C 0.094 3.906 17 H 0.084 0.916 18 O -0.398 6.398 19 C 0.069 3.931 20 C -0.172 4.172 21 C -0.148 4.148 22 C 0.052 3.948 23 H 0.055 0.945 24 H 0.032 0.968 25 H 0.039 0.961 26 H 0.061 0.939 27 H 0.027 0.973 28 H 0.260 0.740 29 H 0.016 0.984 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 7.552 14.778 16.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.144 4.144 3 C 0.106 3.894 4 H -0.028 1.028 5 C -0.542 4.542 6 H 0.072 0.928 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.780 3.220 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.205 1.205 13 N -0.225 5.225 14 C -0.098 4.098 15 C -0.170 4.170 16 C 0.036 3.964 17 H 0.102 0.898 18 O -0.317 6.317 19 C 0.012 3.988 20 C -0.229 4.229 21 C -0.205 4.205 22 C -0.077 4.077 23 H 0.074 0.926 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.035 0.965 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -2.022 7.423 14.521 16.433 hybrid contribution 0.864 0.071 -1.226 1.502 sum -1.158 7.494 13.295 15.306 Atomic orbital electron populations 1.21315 0.95452 0.98801 1.00932 1.21395 0.96723 0.97009 0.99232 1.19245 0.90290 0.92299 0.87582 1.02804 1.21247 1.30650 1.11632 0.90665 0.92776 1.25636 0.95466 0.95781 1.01635 1.70019 1.38300 1.24243 1.23498 0.85569 0.78058 0.78803 0.79615 1.19171 1.21009 1.20491 1.65422 1.53554 1.01331 1.02240 1.23070 0.97150 0.98293 0.91272 1.22866 1.03384 0.93578 0.97188 1.22877 0.88817 0.91956 0.92797 0.89816 1.87966 1.36052 1.55438 1.52273 1.22421 0.99724 0.90149 0.86504 1.22349 1.02224 1.01450 0.96887 1.21888 0.99763 0.96010 1.02865 1.22820 0.97311 0.92342 0.95212 0.92595 0.94897 0.94148 0.92072 0.95414 0.93086 0.96544 0.89893 0.89995 0.88879 0.91283 0.92750 0.89780 0.92212 0.92828 0.88922 0.92654 0.91046 0.96403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.72 9.47 71.98 0.68 -4.03 16 2 C -0.11 -5.15 5.25 30.59 0.16 -4.99 16 3 C 0.21 11.11 1.52 44.17 0.07 11.17 16 4 H -0.05 -2.73 7.98 -2.39 -0.02 -2.75 16 5 C -0.50 -27.97 6.95 25.60 0.18 -27.80 16 6 H 0.05 3.02 7.16 -2.91 -0.02 3.00 16 7 C 0.01 0.74 5.30 84.66 0.45 1.19 16 8 N -0.92 -53.86 11.32 21.45 0.24 -53.62 16 9 Si 0.95 44.43 29.54 68.60 2.03 46.46 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 13 N -0.50 -21.79 4.36 -860.73 -3.75 -25.54 16 14 C 0.03 1.11 5.40 86.45 0.47 1.58 16 15 C -0.13 -3.80 5.85 31.49 0.18 -3.61 16 16 C 0.09 2.95 3.52 31.49 0.11 3.06 16 17 H 0.08 2.31 7.43 -2.39 -0.02 2.29 16 18 O -0.40 -12.27 9.61 -148.98 -1.43 -13.70 16 19 C 0.07 1.52 3.34 30.60 0.10 1.62 16 20 C -0.17 -3.11 9.10 71.98 0.66 -2.45 16 21 C -0.15 -2.81 9.56 71.98 0.69 -2.12 16 22 C 0.05 2.13 5.52 86.45 0.48 2.61 16 23 H 0.06 2.31 7.46 -2.39 -0.02 2.30 16 24 H 0.03 1.56 7.40 -2.38 -0.02 1.54 16 25 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 3.38 6.08 -2.39 -0.01 3.37 16 27 H 0.03 1.24 6.95 -2.39 -0.02 1.22 16 28 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.02 0.65 7.95 -2.39 -0.02 0.63 16 30 H 0.08 2.84 7.66 -2.39 -0.02 2.82 16 31 H 0.08 2.19 6.97 -2.39 -0.02 2.18 16 32 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.07 1.36 7.40 -2.39 -0.02 1.34 16 34 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.06 1.09 6.56 -2.39 -0.02 1.07 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 3.01 7.57 -2.38 -0.02 3.00 16 41 H 0.02 0.83 7.87 -2.38 -0.02 0.81 16 Total: -1.00 -62.48 314.67 2.28 -60.21 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.97 Total: 9.98 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 4.22 Total: -23.79 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -3.51 Total: -79.16 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -1.43 Total: -13.70 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -62.48 2.28 -60.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701670282.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.742 kcal (2) G-P(sol) polarization free energy of solvation -62.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds