Wall clock time and date at job start Sun Mar 29 2020 23:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46895 * 109.47363 * 65.00439 * 3 2 1 14 14 C 1.47443 * 111.00225 * 69.86815 * 13 3 2 15 15 C 1.54323 * 107.23199 * 123.26230 * 14 13 3 16 16 C 1.55137 * 103.01859 * 22.28357 * 15 14 13 17 17 H 1.09000 * 110.98848 * 82.47681 * 16 15 14 18 18 O 1.42895 * 110.99178 * 206.25371 * 16 15 14 19 19 C 1.42897 * 114.00337 * 268.54990 * 18 16 15 20 20 C 1.52999 * 109.47187 * 150.00020 * 19 18 16 21 21 C 1.53001 * 109.47117 * 269.99938 * 19 18 16 22 22 C 1.47838 * 111.00480 * 190.71686 * 13 3 2 23 23 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 24 24 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 25 25 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 27 27 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 28 28 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 29 29 H 1.08993 * 109.89079 * 242.67053 * 14 13 3 30 30 H 1.09002 * 109.88660 * 3.86190 * 14 13 3 31 31 H 1.08997 * 110.70558 * 140.66967 * 15 14 13 32 32 H 1.09004 * 110.70361 * 263.90547 * 15 14 13 33 33 H 1.09000 * 109.47237 * 29.99684 * 19 18 16 34 34 H 1.08997 * 109.47066 * 60.00161 * 20 19 18 35 35 H 1.09004 * 109.46772 * 180.02562 * 20 19 18 36 36 H 1.08997 * 109.47129 * 299.99674 * 20 19 18 37 37 H 1.08997 * 109.47350 * 299.99970 * 21 19 18 38 38 H 1.09006 * 109.47046 * 60.00004 * 21 19 18 39 39 H 1.09004 * 109.47169 * 179.97438 * 21 19 18 40 40 H 1.09004 * 110.37281 * 332.46297 * 22 13 3 41 41 H 1.09006 * 110.37541 * 94.79940 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5992 1.5345 -0.1881 11 1 6.4924 -0.5321 -1.4518 12 1 6.4050 1.5996 -2.6046 13 7 1.6515 2.0993 1.2552 14 6 2.4043 1.5462 2.3960 15 6 3.1301 2.7244 3.0791 16 6 2.2967 3.9544 2.6326 17 1 1.4151 4.0779 3.2617 18 8 3.0935 5.1405 2.6343 19 6 3.0564 5.8640 3.8660 20 6 4.3846 6.5962 4.0677 21 6 1.9143 6.8813 3.8257 22 6 1.8983 3.5554 1.1898 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8295 -0.0694 -2.9455 29 1 1.7181 1.0752 3.0997 30 1 3.1330 0.8175 2.0410 31 1 3.1058 2.6154 4.1634 32 1 4.1567 2.8041 2.7215 33 1 2.8955 5.1696 4.6906 34 1 4.5455 7.2907 3.2431 35 1 4.3564 7.1477 5.0075 36 1 5.1983 5.8715 4.0964 37 1 2.0752 7.5758 3.0012 38 1 0.9680 6.3597 3.6821 39 1 1.8857 7.4329 4.7654 40 1 2.7124 3.7716 0.4979 41 1 0.9924 4.0807 0.8872 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701670283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:18 Heat of formation + Delta-G solvation = -56.141495 kcal Electronic energy + Delta-G solvation = -18577.327079 eV Core-core repulsion = 15877.785776 eV Total energy + Delta-G solvation = -2699.541304 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.00716 -37.22506 -33.94020 -32.25230 -31.39080 -29.14958 -27.74128 -27.15670 -25.95954 -22.93901 -21.48522 -20.83088 -20.40841 -18.73405 -16.85920 -16.43625 -15.33402 -14.93175 -14.48108 -14.14568 -13.85925 -13.18208 -12.97370 -12.71853 -12.61750 -12.33136 -12.22559 -12.13450 -11.77041 -11.47346 -11.23873 -11.10950 -10.87730 -10.77834 -10.63875 -10.60514 -10.29552 -10.05704 -10.03498 -9.58420 -9.45863 -9.11441 -8.98228 -8.33701 -7.16499 -5.97180 -4.08854 3.27692 3.36418 3.40557 3.87163 4.42187 4.91848 5.04988 5.13658 5.22825 5.27770 5.35505 5.43296 5.55731 5.58384 5.70052 5.79280 5.85647 5.95733 6.16476 6.21053 6.25311 6.35820 6.37765 6.50781 6.60904 6.70392 6.73370 6.78488 6.89264 7.12217 7.20091 7.38301 7.60326 7.68199 7.77881 8.00028 8.16764 8.29737 8.48463 9.01124 9.57825 11.02767 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022011 B = 0.007493 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.814137 B = 3735.947741 C = 4597.905529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C 0.207 3.793 4 H 0.037 0.963 5 C -0.540 4.540 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.524 5.524 14 C 0.049 3.951 15 C -0.159 4.159 16 C 0.080 3.920 17 H 0.065 0.935 18 O -0.371 6.371 19 C 0.080 3.920 20 C -0.148 4.148 21 C -0.174 4.174 22 C 0.055 3.945 23 H 0.047 0.953 24 H 0.038 0.962 25 H 0.025 0.975 26 H 0.092 0.908 27 H 0.031 0.969 28 H 0.260 0.740 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.984 7.631 10.854 13.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C 0.101 3.899 4 H 0.055 0.945 5 C -0.579 4.579 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.249 5.249 14 C -0.079 4.079 15 C -0.198 4.198 16 C 0.021 3.979 17 H 0.083 0.917 18 O -0.289 6.289 19 C 0.022 3.978 20 C -0.206 4.206 21 C -0.231 4.231 22 C -0.073 4.073 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.044 0.956 26 H 0.111 0.889 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.397 7.501 10.574 13.184 hybrid contribution 1.804 0.008 -0.063 1.805 sum -0.593 7.509 10.511 12.931 Atomic orbital electron populations 1.21708 0.98911 0.98391 1.00533 1.21557 0.92237 0.99039 1.01862 1.19463 0.93221 0.91299 0.85951 0.94465 1.21836 0.92638 1.37688 1.05704 0.92197 1.24919 0.97786 0.95091 0.95699 1.69890 1.34656 1.38341 1.09508 0.86636 0.86302 0.77631 0.78053 1.19877 1.21050 1.21033 1.63942 1.53842 1.01380 1.05744 1.22609 0.95954 0.96526 0.92841 1.23240 1.00783 0.96350 0.99396 1.23347 0.92141 0.83807 0.98574 0.91727 1.87975 1.69128 1.37566 1.34252 1.22021 0.95330 0.93071 0.87392 1.21846 0.96540 1.00579 1.01610 1.22311 0.98947 0.99866 1.02005 1.22791 1.00108 0.90377 0.94063 0.93393 0.94271 0.95624 0.88938 0.95056 0.92987 0.92918 0.90419 0.92497 0.90806 0.92607 0.91891 0.91740 0.92069 0.91863 0.92461 0.92150 0.91511 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.80 37.16 0.36 -2.48 16 2 C -0.11 -2.59 5.21 -26.73 -0.14 -2.72 16 3 C 0.21 5.13 1.63 -68.87 -0.11 5.02 16 4 H 0.04 1.03 8.07 -51.93 -0.42 0.61 16 5 C -0.54 -14.40 6.25 -34.44 -0.22 -14.61 16 6 H 0.06 1.62 6.21 -52.49 -0.33 1.29 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.89 -24.94 11.28 55.43 0.63 -24.32 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.52 -11.23 4.58 -224.68 -1.03 -12.26 16 14 C 0.05 0.97 5.33 -2.83 -0.02 0.95 16 15 C -0.16 -2.81 6.46 -24.91 -0.16 -2.97 16 16 C 0.08 1.37 3.26 -24.60 -0.08 1.29 16 17 H 0.06 1.02 7.78 -51.93 -0.40 0.61 16 18 O -0.37 -6.27 9.80 -35.23 -0.35 -6.62 16 19 C 0.08 1.03 3.21 -26.73 -0.09 0.95 16 20 C -0.15 -1.67 9.56 37.16 0.36 -1.31 16 21 C -0.17 -1.93 9.53 37.16 0.35 -1.58 16 22 C 0.06 1.11 6.21 -2.30 -0.01 1.09 16 23 H 0.05 0.95 7.75 -51.93 -0.40 0.55 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.09 2.46 5.94 -51.93 -0.31 2.15 16 27 H 0.03 0.73 7.05 -51.93 -0.37 0.36 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.72 5.66 -51.93 -0.29 1.43 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.43 7.73 -51.93 -0.40 1.03 16 33 H 0.06 0.68 7.82 -51.93 -0.41 0.28 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.65 8.00 -51.93 -0.42 0.24 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 1.54 7.10 -51.93 -0.37 1.17 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 317.10 15.07 4.78 4.78 Total: -1.00 -27.72 317.10 -8.31 -36.03 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.47 Total: 0.72 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 0.16 Total: -14.63 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: -0.40 Total: -36.57 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.35 Total: -6.62 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.72 -8.31 -36.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701670283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.114 kcal (2) G-P(sol) polarization free energy of solvation -27.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds