Wall clock time and date at job start Sun Mar 29 2020 23:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46895 * 109.47363 * 65.00439 * 3 2 1 14 14 C 1.47443 * 111.00225 * 69.86815 * 13 3 2 15 15 C 1.54323 * 107.23199 * 123.26230 * 14 13 3 16 16 C 1.55137 * 103.01859 * 22.28357 * 15 14 13 17 17 H 1.09000 * 110.98848 * 82.47681 * 16 15 14 18 18 O 1.42895 * 110.99178 * 206.25371 * 16 15 14 19 19 C 1.42897 * 114.00337 * 268.54990 * 18 16 15 20 20 C 1.52999 * 109.47187 * 150.00020 * 19 18 16 21 21 C 1.53001 * 109.47117 * 269.99938 * 19 18 16 22 22 C 1.47838 * 111.00480 * 190.71686 * 13 3 2 23 23 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 24 24 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 25 25 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 27 27 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 28 28 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 29 29 H 1.08993 * 109.89079 * 242.67053 * 14 13 3 30 30 H 1.09002 * 109.88660 * 3.86190 * 14 13 3 31 31 H 1.08997 * 110.70558 * 140.66967 * 15 14 13 32 32 H 1.09004 * 110.70361 * 263.90547 * 15 14 13 33 33 H 1.09000 * 109.47237 * 29.99684 * 19 18 16 34 34 H 1.08997 * 109.47066 * 60.00161 * 20 19 18 35 35 H 1.09004 * 109.46772 * 180.02562 * 20 19 18 36 36 H 1.08997 * 109.47129 * 299.99674 * 20 19 18 37 37 H 1.08997 * 109.47350 * 299.99970 * 21 19 18 38 38 H 1.09006 * 109.47046 * 60.00004 * 21 19 18 39 39 H 1.09004 * 109.47169 * 179.97438 * 21 19 18 40 40 H 1.09004 * 110.37281 * 332.46297 * 22 13 3 41 41 H 1.09006 * 110.37541 * 94.79940 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5992 1.5345 -0.1881 11 1 6.4924 -0.5321 -1.4518 12 1 6.4050 1.5996 -2.6046 13 7 1.6515 2.0993 1.2552 14 6 2.4043 1.5462 2.3960 15 6 3.1301 2.7244 3.0791 16 6 2.2967 3.9544 2.6326 17 1 1.4151 4.0779 3.2617 18 8 3.0935 5.1405 2.6343 19 6 3.0564 5.8640 3.8660 20 6 4.3846 6.5962 4.0677 21 6 1.9143 6.8813 3.8257 22 6 1.8983 3.5554 1.1898 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8295 -0.0694 -2.9455 29 1 1.7181 1.0752 3.0997 30 1 3.1330 0.8175 2.0410 31 1 3.1058 2.6154 4.1634 32 1 4.1567 2.8041 2.7215 33 1 2.8955 5.1696 4.6906 34 1 4.5455 7.2907 3.2431 35 1 4.3564 7.1477 5.0075 36 1 5.1983 5.8715 4.0964 37 1 2.0752 7.5758 3.0012 38 1 0.9680 6.3597 3.6821 39 1 1.8857 7.4329 4.7654 40 1 2.7124 3.7716 0.4979 41 1 0.9924 4.0807 0.8872 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701670283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:18 Heat of formation + Delta-G solvation = -72.758558 kcal Electronic energy + Delta-G solvation = -18578.047649 eV Core-core repulsion = 15877.785776 eV Total energy + Delta-G solvation = -2700.261873 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.48738 -38.65368 -35.66792 -33.74626 -33.05042 -30.77460 -29.30994 -28.10359 -27.82264 -24.82708 -22.88366 -22.18828 -21.85329 -20.54310 -18.55467 -18.03724 -17.00044 -16.41935 -15.93884 -15.65041 -15.32139 -14.72982 -14.54414 -14.31668 -14.14641 -13.77689 -13.42348 -13.19882 -13.13083 -13.06208 -12.87781 -12.76105 -12.52752 -12.35759 -12.20411 -12.04931 -11.88521 -11.76439 -11.52163 -11.47901 -11.20028 -10.93333 -10.46102 -10.35028 -8.99196 -8.04690 -6.24375 1.33834 1.37130 1.46822 2.39175 2.66065 3.14843 3.56807 3.84045 3.86368 4.08999 4.13297 4.21078 4.32837 4.42263 4.58909 4.64236 4.76034 4.76957 4.86795 4.89301 4.92749 4.93994 4.98638 5.04080 5.11898 5.12790 5.24971 5.29399 5.33727 5.37151 5.45464 5.53379 5.64364 5.78989 6.06270 6.16889 6.37416 6.44082 6.58939 6.95344 7.44860 8.91892 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022011 B = 0.007493 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.814137 B = 3735.947741 C = 4597.905529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.215 3.785 4 H 0.000 1.000 5 C -0.545 4.545 6 H 0.051 0.949 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.943 3.057 10 H -0.274 1.274 11 H -0.278 1.278 12 H -0.283 1.283 13 N -0.521 5.521 14 C 0.048 3.952 15 C -0.151 4.151 16 C 0.094 3.906 17 H 0.090 0.910 18 O -0.395 6.395 19 C 0.069 3.931 20 C -0.147 4.147 21 C -0.170 4.170 22 C 0.051 3.949 23 H 0.058 0.942 24 H 0.031 0.969 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.031 0.969 28 H 0.261 0.739 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.086 0.914 40 H 0.028 0.972 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.270 8.293 13.108 15.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.142 4.142 3 C 0.107 3.893 4 H 0.018 0.982 5 C -0.584 4.584 6 H 0.069 0.931 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.770 3.230 10 H -0.199 1.199 11 H -0.203 1.203 12 H -0.209 1.209 13 N -0.245 5.245 14 C -0.080 4.080 15 C -0.190 4.190 16 C 0.036 3.964 17 H 0.108 0.892 18 O -0.315 6.315 19 C 0.012 3.988 20 C -0.204 4.204 21 C -0.227 4.227 22 C -0.077 4.077 23 H 0.077 0.923 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.047 0.953 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.682 8.171 12.843 15.456 hybrid contribution 1.887 -0.140 -0.733 2.029 sum -0.795 8.031 12.110 14.553 Atomic orbital electron populations 1.21572 0.96226 0.99879 1.00673 1.21397 0.94592 0.97862 1.00335 1.19222 0.91930 0.91725 0.86404 0.98188 1.22034 0.93843 1.37092 1.05399 0.93078 1.25593 1.01604 0.95100 0.95617 1.70007 1.36062 1.39062 1.09907 0.85735 0.81768 0.77759 0.77761 1.19895 1.20322 1.20873 1.63905 1.53829 1.01986 1.04786 1.22642 0.95899 0.96835 0.92607 1.23169 0.99080 0.95563 1.01173 1.23139 0.92912 0.84021 0.96321 0.89206 1.87956 1.69195 1.37516 1.36815 1.22364 0.96862 0.93508 0.86082 1.21869 0.95374 1.00262 1.02874 1.22279 0.97908 0.99368 1.03153 1.22799 0.99251 0.89866 0.95805 0.92302 0.94980 0.93448 0.91919 0.94997 0.92956 0.90482 0.93238 0.89015 0.93240 0.91341 0.92623 0.88779 0.93049 0.92646 0.92732 0.89511 0.95321 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 9.80 71.98 0.71 -4.38 16 2 C -0.10 -4.98 5.21 30.59 0.16 -4.82 16 3 C 0.21 10.92 1.63 44.17 0.07 10.99 16 4 H 0.00 0.01 8.07 -2.38 -0.02 -0.01 16 5 C -0.54 -29.93 6.25 25.60 0.16 -29.77 16 6 H 0.05 2.85 6.21 -2.91 -0.02 2.83 16 7 C 0.02 1.15 5.29 84.66 0.45 1.59 16 8 N -0.91 -52.69 11.28 21.45 0.24 -52.45 16 9 Si 0.94 44.59 29.54 68.60 2.03 46.61 16 10 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 13 N -0.52 -22.26 4.58 -864.76 -3.96 -26.22 16 14 C 0.05 1.85 5.33 86.65 0.46 2.32 16 15 C -0.15 -5.09 6.46 31.78 0.21 -4.88 16 16 C 0.09 3.10 3.26 31.98 0.10 3.20 16 17 H 0.09 2.52 7.78 -2.39 -0.02 2.50 16 18 O -0.40 -12.92 9.80 -148.98 -1.46 -14.38 16 19 C 0.07 1.61 3.21 30.59 0.10 1.71 16 20 C -0.15 -2.97 9.56 71.98 0.69 -2.29 16 21 C -0.17 -3.30 9.53 71.98 0.69 -2.61 16 22 C 0.05 2.08 6.21 86.77 0.54 2.62 16 23 H 0.06 2.23 7.75 -2.38 -0.02 2.21 16 24 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.06 3.41 5.94 -2.38 -0.01 3.40 16 27 H 0.03 1.49 7.05 -2.39 -0.02 1.47 16 28 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 29 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.05 2.19 5.66 -2.39 -0.01 2.18 16 31 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.05 1.90 7.73 -2.38 -0.02 1.88 16 33 H 0.07 1.43 7.82 -2.39 -0.02 1.41 16 34 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.05 1.09 8.00 -2.38 -0.02 1.07 16 39 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.03 1.37 7.10 -2.39 -0.02 1.35 16 41 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16 Total: -1.00 -60.98 317.10 2.14 -58.84 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.96 Total: 13.93 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 4.33 Total: -26.33 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -3.72 Total: -78.67 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -1.46 Total: -14.38 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -60.98 2.14 -58.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701670283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.921 kcal (2) G-P(sol) polarization free energy of solvation -60.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds