Wall clock time and date at job start Sun Mar 29 2020 23:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47491 * 2 1 4 4 H 1.09005 * 109.47494 * 54.48409 * 3 2 1 5 5 C 1.50694 * 109.47558 * 174.48838 * 3 2 1 6 6 H 1.08001 * 120.00296 * 119.99653 * 5 3 2 7 7 C 1.37878 * 119.99905 * 300.00296 * 5 3 2 8 8 N 1.31514 * 120.00161 * 359.97438 * 7 5 3 9 9 Si 1.86809 * 119.99807 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47001 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46786 * 120.00272 * 9 7 5 12 12 H 1.48502 * 109.46651 * 239.99643 * 9 7 5 13 13 N 1.46905 * 109.47386 * 294.49273 * 3 2 1 14 14 C 1.46893 * 111.00329 * 152.95105 * 13 3 2 15 15 C 1.53008 * 109.46996 * 153.64381 * 14 13 3 16 16 C 1.53002 * 109.47038 * 179.97438 * 15 14 13 17 17 C 1.52995 * 109.47061 * 300.00359 * 16 15 14 18 18 C 1.53002 * 109.47061 * 180.02562 * 17 16 15 19 19 O 1.42903 * 109.47154 * 299.99910 * 17 16 15 20 20 C 1.52999 * 109.47608 * 59.99882 * 17 16 15 21 21 C 1.52995 * 109.47101 * 273.64281 * 14 13 3 22 22 H 1.09001 * 109.47013 * 300.73155 * 1 2 3 23 23 H 1.09001 * 109.46657 * 60.72831 * 1 2 3 24 24 H 1.08997 * 109.47386 * 180.72959 * 1 2 3 25 25 H 1.08998 * 109.46911 * 239.99806 * 2 1 3 26 26 H 1.08996 * 109.46743 * 120.00275 * 2 1 3 27 27 H 0.96999 * 120.00117 * 180.02562 * 8 7 5 28 28 H 1.00899 * 110.99601 * 28.99371 * 13 3 2 29 29 H 1.08995 * 109.47301 * 33.64447 * 14 13 3 30 30 H 1.08998 * 109.46829 * 60.00402 * 15 14 13 31 31 H 1.09001 * 109.47100 * 299.99959 * 15 14 13 32 32 H 1.08999 * 109.46777 * 180.02562 * 16 15 14 33 33 H 1.09001 * 109.46817 * 59.99814 * 16 15 14 34 34 H 1.09001 * 109.47283 * 179.97438 * 18 17 16 35 35 H 1.09000 * 109.47196 * 59.99617 * 18 17 16 36 36 H 1.08995 * 109.47138 * 299.99780 * 18 17 16 37 37 H 0.96698 * 114.00358 * 180.02562 * 19 17 16 38 38 H 1.09004 * 109.46732 * 60.00218 * 20 17 16 39 39 H 1.09001 * 109.47221 * 179.97438 * 20 17 16 40 40 H 1.08998 * 109.47690 * 300.00189 * 21 14 13 41 41 H 1.08999 * 109.46996 * 60.00565 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5984 1.9840 0.8365 5 6 3.5408 1.4446 0.1365 6 1 4.1527 1.8868 -0.6359 7 6 4.1329 0.8819 1.2473 8 7 3.3879 0.3438 2.1880 9 14 5.9933 0.8840 1.4161 10 1 6.5971 1.5447 0.2311 11 1 6.3779 1.6233 2.6452 12 1 6.4837 -0.5148 1.5059 13 7 1.6620 2.0955 -1.2604 14 6 1.5345 3.5481 -1.0830 15 6 1.7959 4.2497 -2.4174 16 6 1.6624 5.7627 -2.2329 17 6 0.2492 6.0949 -1.7501 18 6 0.1155 7.6079 -1.5661 19 8 -0.7023 5.6474 -2.7179 20 6 -0.0122 5.3934 -0.4158 21 6 0.1214 3.8809 -0.6001 22 1 -0.3633 0.5252 0.8834 23 1 -0.3633 0.5025 -0.8965 24 1 -0.3634 -1.0275 0.0131 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.8044 -0.0517 2.9696 28 1 0.8109 1.7004 -1.6312 29 1 2.2605 3.8892 -0.3450 30 1 1.0698 3.9087 -3.1554 31 1 2.8026 4.0127 -2.7615 32 1 1.8482 6.2624 -3.1836 33 1 2.3881 6.1040 -1.4946 34 1 -0.8915 7.8447 -1.2226 35 1 0.3015 8.1074 -2.5170 36 1 0.8412 7.9497 -0.8282 37 1 -1.6217 5.8258 -2.4773 38 1 0.7135 5.7348 0.3224 39 1 -1.0189 5.6304 -0.0717 40 1 -0.6046 3.5399 -1.3381 41 1 -0.0647 3.3811 0.3506 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702982691.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:17 Heat of formation + Delta-G solvation = -78.729749 kcal Electronic energy + Delta-G solvation = -18643.266515 eV Core-core repulsion = 15942.745711 eV Total energy + Delta-G solvation = -2700.520804 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.41006 -36.56768 -34.31543 -32.20098 -31.29074 -30.48154 -29.32792 -26.62128 -24.71666 -22.63951 -22.43560 -20.64026 -19.72886 -19.21680 -16.29052 -16.13724 -15.50498 -14.88192 -14.51887 -14.17208 -13.76520 -13.37887 -13.30487 -12.93134 -12.71187 -12.28916 -11.97684 -11.84491 -11.82800 -11.45976 -11.37369 -11.18567 -10.91576 -10.81383 -10.64902 -10.55256 -10.01283 -9.96313 -9.89470 -9.63101 -9.59093 -9.29899 -8.97412 -8.30418 -7.07745 -5.91969 -3.95512 3.33609 3.41579 3.47277 4.30930 4.48841 4.81840 4.90079 5.01288 5.30249 5.37653 5.39592 5.51301 5.67001 5.75574 5.79903 5.85136 5.92125 6.08551 6.15614 6.20413 6.21617 6.24440 6.33112 6.39200 6.45280 6.55895 6.62889 6.87958 6.89581 6.98054 7.15814 7.25912 7.59734 7.76775 7.84419 7.99400 8.42436 8.48870 8.87054 9.13785 9.69486 11.13276 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026632 B = 0.006713 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.118073 B = 4170.275023 C = 4743.761955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.682 5.682 14 C 0.097 3.903 15 C -0.101 4.101 16 C -0.103 4.103 17 C 0.130 3.870 18 C -0.177 4.177 19 O -0.555 6.555 20 C -0.138 4.138 21 C -0.141 4.141 22 H 0.041 0.959 23 H 0.035 0.965 24 H 0.036 0.964 25 H 0.040 0.960 26 H 0.098 0.902 27 H 0.258 0.742 28 H 0.317 0.683 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.368 0.632 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.889 10.329 -5.447 14.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C 0.111 3.889 4 H 0.020 0.980 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.312 5.312 14 C -0.014 4.014 15 C -0.139 4.139 16 C -0.141 4.141 17 C 0.090 3.910 18 C -0.235 4.235 19 O -0.360 6.360 20 C -0.177 4.177 21 C -0.181 4.181 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.116 0.884 27 H 0.067 0.933 28 H 0.134 0.866 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.214 0.786 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.642 10.056 -5.810 13.379 hybrid contribution -0.427 0.226 1.143 1.240 sum -7.068 10.282 -4.667 13.321 Atomic orbital electron populations 1.21877 0.99669 0.99470 0.99624 1.21781 0.91193 1.00621 1.02967 1.19154 0.95241 0.89809 0.84672 0.98013 1.21295 0.91444 1.35931 1.04081 0.92058 1.24963 0.97976 0.95796 0.95931 1.69886 1.34499 1.39838 1.09610 0.86525 0.86033 0.77567 0.77787 1.19790 1.21320 1.21183 1.60760 1.37063 1.01499 1.31873 1.21438 0.93990 0.89942 0.96010 1.21426 1.01887 0.92438 0.98163 1.21526 0.93299 0.98102 1.01144 1.21221 0.90278 0.91409 0.88106 1.22497 1.01951 0.96748 1.02307 1.86580 1.18137 1.84117 1.47127 1.22142 1.01292 0.97073 0.97150 1.22202 0.99907 0.94688 1.01263 0.93993 0.94570 0.94520 0.94148 0.88352 0.93250 0.86555 0.90573 0.91929 0.91682 0.91903 0.90938 0.92730 0.92075 0.91660 0.78596 0.91191 0.92597 0.92065 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.74 37.16 0.36 -2.57 16 2 C -0.13 -3.04 5.35 -26.73 -0.14 -3.18 16 3 C 0.22 5.46 1.82 -68.87 -0.13 5.33 16 4 H 0.00 0.06 7.22 -51.93 -0.37 -0.31 16 5 C -0.49 -13.60 8.61 -34.44 -0.30 -13.90 16 6 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 7 C 0.05 1.48 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.74 11.29 55.43 0.63 -25.12 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 N -0.68 -14.68 6.05 -100.96 -0.61 -15.30 16 14 C 0.10 1.83 2.27 -67.71 -0.15 1.68 16 15 C -0.10 -1.69 5.39 -26.73 -0.14 -1.83 16 16 C -0.10 -1.43 4.94 -26.73 -0.13 -1.56 16 17 C 0.13 1.62 0.98 -90.62 -0.09 1.53 16 18 C -0.18 -1.79 8.82 37.16 0.33 -1.46 16 19 O -0.55 -7.01 11.63 -35.23 -0.41 -7.42 16 20 C -0.14 -1.85 4.92 -26.76 -0.13 -1.98 16 21 C -0.14 -2.31 5.01 -26.76 -0.13 -2.45 16 22 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.04 0.65 6.48 -51.93 -0.34 0.31 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.10 2.64 5.94 -51.93 -0.31 2.33 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 28 H 0.32 6.38 6.22 -39.29 -0.24 6.14 16 29 H 0.08 1.63 7.70 -51.93 -0.40 1.23 16 30 H 0.06 1.08 7.68 -51.93 -0.40 0.68 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.37 3.29 9.05 45.56 0.41 3.70 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.98 7.67 -51.93 -0.40 0.58 16 41 H 0.06 1.06 7.56 -51.93 -0.39 0.67 16 LS Contribution 314.15 15.07 4.73 4.73 Total: -1.00 -29.12 314.15 -8.07 -37.19 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.64 Total: 8.23 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -0.75 Total: -19.00 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.01 Total: -40.41 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.41 Total: -7.42 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.12 -8.07 -37.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702982691.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.536 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds