Wall clock time and date at job start Sun Mar 29 2020 23:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47491 * 2 1 4 4 H 1.09005 * 109.47494 * 54.48409 * 3 2 1 5 5 C 1.50694 * 109.47558 * 174.48838 * 3 2 1 6 6 H 1.08001 * 120.00296 * 119.99653 * 5 3 2 7 7 C 1.37878 * 119.99905 * 300.00296 * 5 3 2 8 8 N 1.31514 * 120.00161 * 359.97438 * 7 5 3 9 9 Si 1.86809 * 119.99807 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47001 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46786 * 120.00272 * 9 7 5 12 12 H 1.48502 * 109.46651 * 239.99643 * 9 7 5 13 13 N 1.46905 * 109.47386 * 294.49273 * 3 2 1 14 14 C 1.46893 * 111.00329 * 152.95105 * 13 3 2 15 15 C 1.53008 * 109.46996 * 153.64381 * 14 13 3 16 16 C 1.53002 * 109.47038 * 179.97438 * 15 14 13 17 17 C 1.52995 * 109.47061 * 300.00359 * 16 15 14 18 18 C 1.53002 * 109.47061 * 180.02562 * 17 16 15 19 19 O 1.42903 * 109.47154 * 299.99910 * 17 16 15 20 20 C 1.52999 * 109.47608 * 59.99882 * 17 16 15 21 21 C 1.52995 * 109.47101 * 273.64281 * 14 13 3 22 22 H 1.09001 * 109.47013 * 300.73155 * 1 2 3 23 23 H 1.09001 * 109.46657 * 60.72831 * 1 2 3 24 24 H 1.08997 * 109.47386 * 180.72959 * 1 2 3 25 25 H 1.08998 * 109.46911 * 239.99806 * 2 1 3 26 26 H 1.08996 * 109.46743 * 120.00275 * 2 1 3 27 27 H 0.96999 * 120.00117 * 180.02562 * 8 7 5 28 28 H 1.00899 * 110.99601 * 28.99371 * 13 3 2 29 29 H 1.08995 * 109.47301 * 33.64447 * 14 13 3 30 30 H 1.08998 * 109.46829 * 60.00402 * 15 14 13 31 31 H 1.09001 * 109.47100 * 299.99959 * 15 14 13 32 32 H 1.08999 * 109.46777 * 180.02562 * 16 15 14 33 33 H 1.09001 * 109.46817 * 59.99814 * 16 15 14 34 34 H 1.09001 * 109.47283 * 179.97438 * 18 17 16 35 35 H 1.09000 * 109.47196 * 59.99617 * 18 17 16 36 36 H 1.08995 * 109.47138 * 299.99780 * 18 17 16 37 37 H 0.96698 * 114.00358 * 180.02562 * 19 17 16 38 38 H 1.09004 * 109.46732 * 60.00218 * 20 17 16 39 39 H 1.09001 * 109.47221 * 179.97438 * 20 17 16 40 40 H 1.08998 * 109.47690 * 300.00189 * 21 14 13 41 41 H 1.08999 * 109.46996 * 60.00565 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5984 1.9840 0.8365 5 6 3.5408 1.4446 0.1365 6 1 4.1527 1.8868 -0.6359 7 6 4.1329 0.8819 1.2473 8 7 3.3879 0.3438 2.1880 9 14 5.9933 0.8840 1.4161 10 1 6.5971 1.5447 0.2311 11 1 6.3779 1.6233 2.6452 12 1 6.4837 -0.5148 1.5059 13 7 1.6620 2.0955 -1.2604 14 6 1.5345 3.5481 -1.0830 15 6 1.7959 4.2497 -2.4174 16 6 1.6624 5.7627 -2.2329 17 6 0.2492 6.0949 -1.7501 18 6 0.1155 7.6079 -1.5661 19 8 -0.7023 5.6474 -2.7179 20 6 -0.0122 5.3934 -0.4158 21 6 0.1214 3.8809 -0.6001 22 1 -0.3633 0.5252 0.8834 23 1 -0.3633 0.5025 -0.8965 24 1 -0.3634 -1.0275 0.0131 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.8044 -0.0517 2.9696 28 1 0.8109 1.7004 -1.6312 29 1 2.2605 3.8892 -0.3450 30 1 1.0698 3.9087 -3.1554 31 1 2.8026 4.0127 -2.7615 32 1 1.8482 6.2624 -3.1836 33 1 2.3881 6.1040 -1.4946 34 1 -0.8915 7.8447 -1.2226 35 1 0.3015 8.1074 -2.5170 36 1 0.8412 7.9497 -0.8282 37 1 -1.6217 5.8258 -2.4773 38 1 0.7135 5.7348 0.3224 39 1 -1.0189 5.6304 -0.0717 40 1 -0.6046 3.5399 -1.3381 41 1 -0.0647 3.3811 0.3506 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702982691.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:16 Heat of formation + Delta-G solvation = -98.678088 kcal Electronic energy + Delta-G solvation = -18644.131540 eV Core-core repulsion = 15942.745711 eV Total energy + Delta-G solvation = -2701.385829 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.59883 -38.16577 -35.80366 -33.99819 -32.79263 -31.71073 -30.71540 -28.45738 -26.15194 -24.45267 -23.68943 -21.88590 -21.53204 -20.61671 -18.29185 -17.38224 -16.84240 -16.65140 -15.89573 -15.55454 -15.40691 -14.78928 -14.59880 -14.41908 -14.26637 -13.57441 -13.48867 -13.17256 -13.03940 -12.99447 -12.80023 -12.67079 -12.51447 -12.45070 -12.19170 -11.97986 -11.92772 -11.58702 -11.53466 -11.20040 -11.08459 -10.83670 -10.57708 -10.43028 -8.87868 -8.05967 -6.17975 1.38665 1.40808 1.52941 2.43780 3.18213 3.36002 3.69096 3.77631 3.88098 4.04207 4.21315 4.35007 4.49304 4.50428 4.56758 4.62058 4.64365 4.70091 4.77989 4.87736 4.93796 4.99632 5.03445 5.09618 5.16916 5.23354 5.25626 5.28150 5.33976 5.41175 5.52314 5.55085 5.65692 5.78534 5.92294 6.39436 6.59971 6.97390 7.00715 7.06688 7.51461 8.96947 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026632 B = 0.006713 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.118073 B = 4170.275023 C = 4743.761955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C 0.228 3.772 4 H -0.030 1.030 5 C -0.509 4.509 6 H 0.046 0.954 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.954 3.046 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.279 1.279 13 N -0.687 5.687 14 C 0.097 3.903 15 C -0.092 4.092 16 C -0.104 4.104 17 C 0.136 3.864 18 C -0.171 4.171 19 O -0.568 6.568 20 C -0.135 4.135 21 C -0.132 4.132 22 H 0.036 0.964 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.034 0.966 26 H 0.067 0.933 27 H 0.260 0.740 28 H 0.325 0.675 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.386 0.614 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.805 11.566 -6.165 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C 0.120 3.880 4 H -0.012 1.012 5 C -0.548 4.548 6 H 0.064 0.936 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.780 3.220 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.205 1.205 13 N -0.317 5.317 14 C -0.013 4.013 15 C -0.130 4.130 16 C -0.142 4.142 17 C 0.095 3.905 18 C -0.228 4.228 19 O -0.376 6.376 20 C -0.173 4.173 21 C -0.171 4.171 22 H 0.055 0.945 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.144 0.856 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.235 0.765 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.582 11.306 -6.536 15.100 hybrid contribution -0.154 -0.172 1.346 1.366 sum -7.736 11.134 -5.190 14.517 Atomic orbital electron populations 1.21730 0.96273 1.01101 1.00307 1.21618 0.94260 0.99270 1.01054 1.18884 0.93718 0.90407 0.84989 1.01201 1.21532 0.93041 1.36218 1.04038 0.93576 1.25674 1.02228 0.95400 0.95597 1.70007 1.36098 1.40111 1.09902 0.85570 0.80924 0.77745 0.77772 1.19662 1.20627 1.20514 1.60680 1.37821 1.03095 1.30125 1.21439 0.94940 0.88395 0.96572 1.21304 1.00729 0.94533 0.96437 1.21545 0.94947 0.95673 1.02006 1.21101 0.89260 0.92998 0.87103 1.22416 1.03255 0.94374 1.02804 1.86539 1.19469 1.84399 1.47181 1.22140 1.02644 0.94563 0.97972 1.22038 0.97921 0.97105 1.00040 0.94519 0.92632 0.92367 0.94724 0.91439 0.93109 0.85599 0.93934 0.92031 0.93415 0.90662 0.90876 0.90879 0.91579 0.91377 0.76543 0.91851 0.90079 0.91234 0.94541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 9.74 71.98 0.70 -4.58 16 2 C -0.12 -6.00 5.35 30.59 0.16 -5.84 16 3 C 0.23 11.78 1.82 44.16 0.08 11.86 16 4 H -0.03 -1.69 7.22 -2.38 -0.02 -1.70 16 5 C -0.51 -29.28 8.61 25.60 0.22 -29.06 16 6 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 7 C 0.01 0.50 5.29 84.65 0.45 0.95 16 8 N -0.92 -53.94 11.29 21.45 0.24 -53.70 16 9 Si 0.95 45.16 29.54 68.60 2.03 47.19 16 10 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 N -0.69 -30.17 6.05 -473.33 -2.87 -33.03 16 14 C 0.10 3.73 2.27 44.92 0.10 3.83 16 15 C -0.09 -3.06 5.39 30.60 0.16 -2.89 16 16 C -0.10 -2.75 4.94 30.59 0.15 -2.60 16 17 C 0.14 3.04 0.98 -10.79 -0.01 3.03 16 18 C -0.17 -2.88 8.82 71.98 0.63 -2.24 16 19 O -0.57 -12.65 11.63 -148.98 -1.73 -14.38 16 20 C -0.13 -3.37 4.92 30.58 0.15 -3.21 16 21 C -0.13 -4.26 5.01 30.58 0.15 -4.10 16 22 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 23 H 0.05 1.91 6.48 -2.39 -0.02 1.90 16 24 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.07 3.72 5.94 -2.39 -0.01 3.70 16 27 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 28 H 0.33 13.07 6.22 -89.69 -0.56 12.51 16 29 H 0.04 1.91 7.70 -2.39 -0.02 1.89 16 30 H 0.06 2.06 7.68 -2.39 -0.02 2.04 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.39 5.50 9.05 -74.06 -0.67 4.83 16 38 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.07 2.12 7.67 -2.39 -0.02 2.10 16 41 H 0.04 1.32 7.56 -2.39 -0.02 1.30 16 Total: -1.00 -63.82 314.15 0.40 -63.42 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: -0.23 Total: 25.38 kcal Atomic # 6 Polarization: -37.82 SS G_CDS: 2.96 Total: -34.87 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -2.62 Total: -86.74 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -1.73 Total: -14.38 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -63.82 0.40 -63.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702982691.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.254 kcal (2) G-P(sol) polarization free energy of solvation -63.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds