Wall clock time and date at job start Sun Mar 29 2020 23:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46825 * 2 1 4 4 H 1.09000 * 109.46591 * 304.12157 * 3 2 1 5 5 C 1.50703 * 109.46781 * 184.12855 * 3 2 1 6 6 H 1.07996 * 119.99496 * 271.44449 * 5 3 2 7 7 C 1.37872 * 120.00046 * 91.44945 * 5 3 2 8 8 N 1.31508 * 120.00337 * 2.71534 * 7 5 3 9 9 Si 1.86800 * 119.99773 * 182.44113 * 7 5 3 10 10 H 1.48498 * 109.47106 * 270.27372 * 9 7 5 11 11 H 1.48496 * 109.47471 * 30.27449 * 9 7 5 12 12 H 1.48507 * 109.47111 * 150.27582 * 9 7 5 13 13 N 1.46897 * 109.47443 * 64.12634 * 3 2 1 14 14 C 1.48558 * 110.99949 * 32.22391 * 13 3 2 15 15 C 1.54380 * 104.59387 * 200.96362 * 14 13 3 16 16 C 1.54256 * 105.06321 * 23.85292 * 15 14 13 17 17 C 1.48564 * 110.99849 * 276.80880 * 13 3 2 18 18 H 1.09003 * 110.41523 * 40.13863 * 17 13 3 19 19 C 1.53002 * 110.40865 * 277.81732 * 17 13 3 20 20 C 1.53004 * 109.47170 * 62.48883 * 19 17 13 21 21 C 1.53004 * 109.46897 * 182.48653 * 19 17 13 22 22 O 1.42894 * 109.47472 * 302.48590 * 19 17 13 23 23 H 1.08994 * 109.46898 * 49.97338 * 1 2 3 24 24 H 1.09003 * 109.46866 * 169.97245 * 1 2 3 25 25 H 1.08995 * 109.46770 * 289.97140 * 1 2 3 26 26 H 1.08992 * 109.46920 * 239.99727 * 2 1 3 27 27 H 1.09003 * 109.46934 * 119.99229 * 2 1 3 28 28 H 0.97010 * 120.00130 * 354.43690 * 8 7 5 29 29 H 1.09000 * 110.41362 * 319.74059 * 14 13 3 30 30 H 1.08998 * 110.40863 * 82.18496 * 14 13 3 31 31 H 1.09006 * 110.32167 * 264.95443 * 15 14 13 32 32 H 1.08999 * 110.41050 * 142.79866 * 15 14 13 33 33 H 1.09000 * 110.32589 * 241.10906 * 16 15 14 34 34 H 1.08995 * 110.32793 * 118.89812 * 16 15 14 35 35 H 1.08997 * 109.47149 * 51.30683 * 20 19 17 36 36 H 1.09001 * 109.47073 * 171.30953 * 20 19 17 37 37 H 1.09004 * 109.46740 * 291.31027 * 20 19 17 38 38 H 1.08991 * 109.47205 * 60.00401 * 21 19 17 39 39 H 1.09001 * 109.46609 * 179.97438 * 21 19 17 40 40 H 1.08997 * 109.47034 * 299.99748 * 21 19 17 41 41 H 0.96705 * 114.00140 * 59.99472 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6176 1.9771 -0.8508 5 6 3.5436 1.4438 -0.1023 6 1 4.1457 1.3982 0.7931 7 6 4.1504 1.5032 -1.3389 8 7 3.4184 1.6126 -2.4260 9 14 6.0126 1.4359 -1.4696 10 1 6.5636 2.8132 -1.4026 11 1 6.5587 0.6292 -0.3489 12 1 6.3959 0.8118 -2.7615 13 7 1.6334 2.1057 1.2461 14 6 1.5838 1.1382 2.3724 15 6 0.6629 1.8044 3.4171 16 6 -0.2188 2.7797 2.6104 17 6 0.2436 2.6208 1.1460 18 1 -0.3900 1.9060 0.6208 19 6 0.2261 3.9735 0.4312 20 6 0.7427 3.8014 -0.9987 21 6 -1.2054 4.5126 0.3949 22 8 1.0640 4.8940 1.1329 23 1 -0.3633 0.6609 -0.7869 24 1 -0.3633 -1.0120 -0.1789 25 1 -0.3633 0.3510 0.9658 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8901 28 1 2.4511 1.5704 -2.3657 29 1 1.1596 0.1904 2.0410 30 1 2.5805 0.9856 2.7865 31 1 1.2558 2.3492 4.1518 32 1 0.0444 1.0552 3.9113 33 1 -0.0587 3.8033 2.9489 34 1 -1.2700 2.5082 2.7070 35 1 0.2023 2.9893 -1.4850 36 1 0.5870 4.7258 -1.5549 37 1 1.8068 3.5665 -0.9747 38 1 -1.5734 4.6352 1.4134 39 1 -1.2177 5.4764 -0.1140 40 1 -1.8446 3.8105 -0.1404 41 1 1.9882 4.6160 1.1950 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707167497.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:12 Heat of formation + Delta-G solvation = -36.724236 kcal Electronic energy + Delta-G solvation = -19780.277030 eV Core-core repulsion = 17081.577722 eV Total energy + Delta-G solvation = -2698.699308 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.83578 -36.44729 -34.24882 -31.90657 -31.80089 -29.76125 -27.61695 -26.83373 -26.10082 -23.16139 -21.85986 -20.72962 -19.30673 -19.20679 -16.86366 -16.19423 -15.76564 -14.69190 -14.47068 -13.74104 -13.61731 -13.36980 -13.23577 -12.92298 -12.38850 -12.17396 -11.89992 -11.82044 -11.64640 -11.36710 -11.12185 -10.93406 -10.83745 -10.68950 -10.66887 -10.58731 -10.34681 -10.30935 -10.08194 -9.62332 -9.29535 -9.21247 -8.56949 -8.25603 -7.24687 -6.34032 -4.03695 3.44796 3.46870 3.62806 4.51073 4.74285 4.85778 5.20554 5.21730 5.35120 5.48047 5.55229 5.69625 5.75665 5.79401 5.82352 5.88353 6.01420 6.05448 6.06870 6.18409 6.22866 6.26368 6.35917 6.37936 6.51252 6.55629 6.58121 6.60073 6.66824 6.72540 6.90246 6.97811 7.12841 7.22213 7.80143 8.14545 8.30202 8.40136 8.59647 8.90271 9.64901 11.03065 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023498 B = 0.009732 C = 0.008772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.299551 B = 2876.360919 C = 3191.305219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.151 4.151 3 C 0.161 3.839 4 H 0.074 0.926 5 C -0.568 4.568 6 H 0.050 0.950 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 1.069 2.931 10 H -0.288 1.288 11 H -0.290 1.290 12 H -0.287 1.287 13 N -0.486 5.486 14 C 0.025 3.975 15 C -0.125 4.125 16 C -0.115 4.115 17 C 0.011 3.989 18 H 0.069 0.931 19 C 0.148 3.852 20 C -0.183 4.183 21 C -0.137 4.137 22 O -0.564 6.564 23 H 0.047 0.953 24 H 0.037 0.963 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.267 0.733 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.094 0.906 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.550 0.912 6.549 10.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.191 4.191 3 C 0.054 3.946 4 H 0.091 0.909 5 C -0.607 4.607 6 H 0.068 0.932 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.898 3.102 10 H -0.215 1.215 11 H -0.216 1.216 12 H -0.213 1.213 13 N -0.210 5.210 14 C -0.103 4.103 15 C -0.163 4.163 16 C -0.153 4.153 17 C -0.098 4.098 18 H 0.086 0.914 19 C 0.107 3.893 20 C -0.240 4.240 21 C -0.194 4.194 22 O -0.372 6.372 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.113 0.887 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -6.441 1.761 5.598 8.713 hybrid contribution -1.318 -1.300 0.826 2.027 sum -7.758 0.461 6.425 10.084 Atomic orbital electron populations 1.22252 0.98975 0.99938 1.00710 1.22436 0.92352 1.03030 1.01252 1.20265 0.96852 0.88438 0.89013 0.90851 1.21803 0.90365 1.53850 0.94686 0.93173 1.25738 1.06757 0.93681 0.92210 1.70806 1.07474 1.46802 1.30150 0.83533 0.74563 0.76719 0.75365 1.21490 1.21636 1.21297 1.65669 1.17848 1.31602 1.05835 1.23250 0.99220 0.95682 0.92180 1.22312 0.97816 0.98073 0.98118 1.22233 0.97672 1.00438 0.94986 1.23761 0.93352 0.96881 0.95817 0.91394 1.20877 0.90136 0.87726 0.90542 1.22753 1.04623 1.00589 0.96020 1.21750 0.94650 1.01059 1.01963 1.86255 1.24571 1.48261 1.78137 0.93373 0.94377 0.92716 0.92579 0.92574 0.92100 0.92644 0.91156 0.91928 0.92762 0.90627 0.92911 0.92785 0.93380 0.88718 0.92299 0.92321 0.91962 0.76275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 7.91 37.16 0.29 -2.60 16 2 C -0.15 -3.23 4.85 -26.73 -0.13 -3.36 16 3 C 0.16 3.67 1.00 -68.86 -0.07 3.61 16 4 H 0.07 1.75 2.13 -51.93 -0.11 1.64 16 5 C -0.57 -14.98 8.57 -34.44 -0.30 -15.27 16 6 H 0.05 1.37 7.81 -52.49 -0.41 0.96 16 7 C 0.02 0.54 5.46 -17.82 -0.10 0.44 16 8 N -0.92 -26.08 13.61 55.43 0.75 -25.33 16 9 Si 1.07 24.75 29.90 -169.99 -5.08 19.67 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.49 -9.73 4.28 -215.61 -0.92 -10.66 16 14 C 0.02 0.45 5.36 -2.18 -0.01 0.44 16 15 C -0.13 -1.92 7.00 -25.35 -0.18 -2.10 16 16 C -0.12 -1.79 5.43 -25.35 -0.14 -1.93 16 17 C 0.01 0.19 1.28 -66.07 -0.08 0.11 16 18 H 0.07 1.21 3.95 -51.93 -0.21 1.00 16 19 C 0.15 2.60 0.87 -90.61 -0.08 2.52 16 20 C -0.18 -3.53 7.16 37.16 0.27 -3.26 16 21 C -0.14 -2.01 8.63 37.16 0.32 -1.69 16 22 O -0.56 -10.51 12.04 -35.23 -0.42 -10.94 16 23 H 0.05 0.86 7.55 -51.93 -0.39 0.47 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.92 4.85 -51.93 -0.25 0.67 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.06 1.18 5.88 -51.93 -0.31 0.88 16 28 H 0.27 7.52 6.56 -40.82 -0.27 7.26 16 29 H 0.06 1.02 3.92 -51.93 -0.20 0.81 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.22 7.05 -51.93 -0.37 0.85 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 1.03 7.51 -51.93 -0.39 0.64 16 36 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 37 H 0.09 2.17 6.16 -51.93 -0.32 1.85 16 38 H 0.06 0.81 7.25 -51.93 -0.38 0.44 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.39 7.41 8.47 45.56 0.39 7.79 16 LS Contribution 297.04 15.07 4.48 4.48 Total: -1.00 -27.44 297.04 -7.21 -34.65 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -5.81 Total: 11.21 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: -0.20 Total: -23.09 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.17 Total: -35.98 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -0.42 Total: -10.94 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.08 Total: 19.67 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.44 -7.21 -34.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707167497.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.072 kcal (2) G-P(sol) polarization free energy of solvation -27.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds