Wall clock time and date at job start Sun Mar 29 2020 23:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46825 * 2 1 4 4 H 1.09000 * 109.46591 * 304.12157 * 3 2 1 5 5 C 1.50703 * 109.46781 * 184.12855 * 3 2 1 6 6 H 1.07996 * 119.99496 * 271.44449 * 5 3 2 7 7 C 1.37872 * 120.00046 * 91.44945 * 5 3 2 8 8 N 1.31508 * 120.00337 * 2.71534 * 7 5 3 9 9 Si 1.86800 * 119.99773 * 182.44113 * 7 5 3 10 10 H 1.48498 * 109.47106 * 270.27372 * 9 7 5 11 11 H 1.48496 * 109.47471 * 30.27449 * 9 7 5 12 12 H 1.48507 * 109.47111 * 150.27582 * 9 7 5 13 13 N 1.46897 * 109.47443 * 64.12634 * 3 2 1 14 14 C 1.48558 * 110.99949 * 32.22391 * 13 3 2 15 15 C 1.54380 * 104.59387 * 200.96362 * 14 13 3 16 16 C 1.54256 * 105.06321 * 23.85292 * 15 14 13 17 17 C 1.48564 * 110.99849 * 276.80880 * 13 3 2 18 18 H 1.09003 * 110.41523 * 40.13863 * 17 13 3 19 19 C 1.53002 * 110.40865 * 277.81732 * 17 13 3 20 20 C 1.53004 * 109.47170 * 62.48883 * 19 17 13 21 21 C 1.53004 * 109.46897 * 182.48653 * 19 17 13 22 22 O 1.42894 * 109.47472 * 302.48590 * 19 17 13 23 23 H 1.08994 * 109.46898 * 49.97338 * 1 2 3 24 24 H 1.09003 * 109.46866 * 169.97245 * 1 2 3 25 25 H 1.08995 * 109.46770 * 289.97140 * 1 2 3 26 26 H 1.08992 * 109.46920 * 239.99727 * 2 1 3 27 27 H 1.09003 * 109.46934 * 119.99229 * 2 1 3 28 28 H 0.97010 * 120.00130 * 354.43690 * 8 7 5 29 29 H 1.09000 * 110.41362 * 319.74059 * 14 13 3 30 30 H 1.08998 * 110.40863 * 82.18496 * 14 13 3 31 31 H 1.09006 * 110.32167 * 264.95443 * 15 14 13 32 32 H 1.08999 * 110.41050 * 142.79866 * 15 14 13 33 33 H 1.09000 * 110.32589 * 241.10906 * 16 15 14 34 34 H 1.08995 * 110.32793 * 118.89812 * 16 15 14 35 35 H 1.08997 * 109.47149 * 51.30683 * 20 19 17 36 36 H 1.09001 * 109.47073 * 171.30953 * 20 19 17 37 37 H 1.09004 * 109.46740 * 291.31027 * 20 19 17 38 38 H 1.08991 * 109.47205 * 60.00401 * 21 19 17 39 39 H 1.09001 * 109.46609 * 179.97438 * 21 19 17 40 40 H 1.08997 * 109.47034 * 299.99748 * 21 19 17 41 41 H 0.96705 * 114.00140 * 59.99472 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6176 1.9771 -0.8508 5 6 3.5436 1.4438 -0.1023 6 1 4.1457 1.3982 0.7931 7 6 4.1504 1.5032 -1.3389 8 7 3.4184 1.6126 -2.4260 9 14 6.0126 1.4359 -1.4696 10 1 6.5636 2.8132 -1.4026 11 1 6.5587 0.6292 -0.3489 12 1 6.3959 0.8118 -2.7615 13 7 1.6334 2.1057 1.2461 14 6 1.5838 1.1382 2.3724 15 6 0.6629 1.8044 3.4171 16 6 -0.2188 2.7797 2.6104 17 6 0.2436 2.6208 1.1460 18 1 -0.3900 1.9060 0.6208 19 6 0.2261 3.9735 0.4312 20 6 0.7427 3.8014 -0.9987 21 6 -1.2054 4.5126 0.3949 22 8 1.0640 4.8940 1.1329 23 1 -0.3633 0.6609 -0.7869 24 1 -0.3633 -1.0120 -0.1789 25 1 -0.3633 0.3510 0.9658 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8901 28 1 2.4511 1.5704 -2.3657 29 1 1.1596 0.1904 2.0410 30 1 2.5805 0.9856 2.7865 31 1 1.2558 2.3492 4.1518 32 1 0.0444 1.0552 3.9113 33 1 -0.0587 3.8033 2.9489 34 1 -1.2700 2.5082 2.7070 35 1 0.2023 2.9893 -1.4850 36 1 0.5870 4.7258 -1.5549 37 1 1.8068 3.5665 -0.9747 38 1 -1.5734 4.6352 1.4134 39 1 -1.2177 5.4764 -0.1140 40 1 -1.8446 3.8105 -0.1404 41 1 1.9882 4.6160 1.1950 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707167497.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:12 Heat of formation + Delta-G solvation = -55.217466 kcal Electronic energy + Delta-G solvation = -19781.078956 eV Core-core repulsion = 17081.577722 eV Total energy + Delta-G solvation = -2699.501235 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.32782 -37.94864 -35.93027 -33.71277 -33.23892 -31.28232 -29.01880 -28.24143 -27.84563 -25.03391 -23.34653 -22.11679 -20.93083 -20.65418 -18.72119 -17.65310 -17.36098 -16.18312 -15.94590 -15.63606 -15.18837 -14.92745 -14.69324 -14.33908 -13.91898 -13.70393 -13.50464 -13.11578 -13.01256 -12.88514 -12.76381 -12.53224 -12.41210 -12.34628 -12.20274 -12.01605 -11.98750 -11.80670 -11.66585 -11.04546 -11.02612 -10.68653 -10.52241 -10.21834 -8.83614 -8.48046 -6.17297 1.54027 1.60789 1.77937 2.59380 3.15920 3.40365 3.52184 3.84576 3.86552 4.17177 4.18037 4.27179 4.28019 4.35626 4.39148 4.45855 4.51682 4.66668 4.77134 4.82392 4.90880 4.93598 4.97568 5.01593 5.06714 5.08424 5.14808 5.16988 5.26652 5.29389 5.31709 5.45757 5.48913 5.57193 6.02197 6.27932 6.48152 6.62032 6.84749 6.92088 7.57070 8.89464 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023498 B = 0.009732 C = 0.008772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.299551 B = 2876.360919 C = 3191.305219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.146 4.146 3 C 0.162 3.838 4 H 0.064 0.936 5 C -0.573 4.573 6 H 0.033 0.967 7 C -0.026 4.026 8 N -0.940 5.940 9 Si 1.108 2.892 10 H -0.280 1.280 11 H -0.278 1.278 12 H -0.288 1.288 13 N -0.500 5.500 14 C 0.021 3.979 15 C -0.116 4.116 16 C -0.108 4.108 17 C 0.011 3.989 18 H 0.071 0.929 19 C 0.145 3.855 20 C -0.173 4.173 21 C -0.132 4.132 22 O -0.568 6.568 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.024 0.976 27 H 0.055 0.945 28 H 0.259 0.741 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.237 0.973 7.973 12.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C 0.055 3.945 4 H 0.082 0.918 5 C -0.612 4.612 6 H 0.051 0.949 7 C -0.224 4.224 8 N -0.579 5.579 9 Si 0.932 3.068 10 H -0.206 1.206 11 H -0.204 1.204 12 H -0.214 1.214 13 N -0.223 5.223 14 C -0.107 4.107 15 C -0.154 4.154 16 C -0.146 4.146 17 C -0.098 4.098 18 H 0.089 0.911 19 C 0.104 3.896 20 C -0.231 4.231 21 C -0.190 4.190 22 O -0.375 6.375 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.043 0.957 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -8.143 1.826 7.046 10.922 hybrid contribution -0.790 -1.317 0.415 1.591 sum -8.934 0.510 7.461 11.651 Atomic orbital electron populations 1.22115 0.95814 1.01275 1.01499 1.22277 0.95166 1.01517 0.99615 1.20081 0.94853 0.89365 0.90215 0.91821 1.22095 0.92623 1.52729 0.93798 0.94880 1.26828 1.09887 0.93449 0.92250 1.70896 1.07133 1.49097 1.30755 0.83019 0.70974 0.77229 0.75549 1.20591 1.20369 1.21391 1.65490 1.20098 1.31809 1.04946 1.23278 0.99168 0.95792 0.92500 1.22271 0.97439 0.98478 0.97203 1.22215 0.99169 1.00316 0.92918 1.23811 0.91757 0.96598 0.97590 0.91115 1.21061 0.91478 0.88050 0.88977 1.22629 1.01934 1.00629 0.97868 1.21750 0.92494 1.01520 1.03227 1.86261 1.24306 1.48735 1.78198 0.93663 0.92415 0.91095 0.95744 0.92629 0.93030 0.92527 0.93020 0.91621 0.90075 0.91027 0.90138 0.93028 0.92792 0.92786 0.90889 0.92014 0.90299 0.76975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.09 7.91 71.99 0.57 -4.52 16 2 C -0.15 -6.27 4.85 30.60 0.15 -6.12 16 3 C 0.16 7.53 1.00 44.17 0.04 7.58 16 4 H 0.06 3.12 2.13 -2.39 -0.01 3.12 16 5 C -0.57 -31.09 8.57 25.60 0.22 -30.87 16 6 H 0.03 1.85 7.81 -2.91 -0.02 1.83 16 7 C -0.03 -1.43 5.46 84.65 0.46 -0.97 16 8 N -0.94 -55.17 13.61 21.44 0.29 -54.88 16 9 Si 1.11 50.78 29.90 68.60 2.05 52.83 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 13 N -0.50 -19.81 4.28 -836.06 -3.58 -23.39 16 14 C 0.02 0.73 5.36 86.45 0.46 1.19 16 15 C -0.12 -3.19 7.00 31.49 0.22 -2.97 16 16 C -0.11 -2.97 5.43 31.49 0.17 -2.80 16 17 C 0.01 0.37 1.28 45.06 0.06 0.42 16 18 H 0.07 2.33 3.95 -2.39 -0.01 2.32 16 19 C 0.15 4.88 0.87 -10.79 -0.01 4.87 16 20 C -0.17 -6.71 7.16 71.98 0.52 -6.19 16 21 C -0.13 -3.50 8.63 71.98 0.62 -2.88 16 22 O -0.57 -20.64 12.04 -148.98 -1.79 -22.43 16 23 H 0.04 1.55 7.55 -2.39 -0.02 1.54 16 24 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.07 2.18 4.85 -2.39 -0.01 2.16 16 26 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 2.34 5.88 -2.39 -0.01 2.33 16 28 H 0.26 15.14 6.56 -92.70 -0.61 14.53 16 29 H 0.06 1.98 3.92 -2.39 -0.01 1.97 16 30 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 33 H 0.07 2.06 7.05 -2.39 -0.02 2.04 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.05 1.97 7.51 -2.39 -0.02 1.95 16 36 H 0.05 1.95 8.13 -2.39 -0.02 1.93 16 37 H 0.05 2.55 6.16 -2.39 -0.01 2.54 16 38 H 0.07 1.74 7.25 -2.39 -0.02 1.72 16 39 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.38 14.71 8.47 -74.05 -0.63 14.09 16 Total: -1.00 -59.97 297.04 1.01 -58.97 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.55 Total: 32.16 kcal Atomic # 6 Polarization: -46.74 SS G_CDS: 3.48 Total: -43.26 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -3.29 Total: -78.27 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -1.79 Total: -22.43 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 2.05 Total: 52.83 kcal Total: -59.97 1.01 -58.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707167497.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.749 kcal (2) G-P(sol) polarization free energy of solvation -59.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds