Wall clock time and date at job start Sun Mar 29 2020 23:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47280 * 2 1 4 4 H 1.09002 * 109.47002 * 54.72864 * 3 2 1 5 5 C 1.50698 * 109.47352 * 174.72889 * 3 2 1 6 6 H 1.08004 * 119.99806 * 114.49750 * 5 3 2 7 7 C 1.37875 * 119.99960 * 294.49970 * 5 3 2 8 8 N 1.31519 * 120.00094 * 166.17632 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 346.17355 * 7 5 3 10 10 H 1.48497 * 109.47124 * 272.25384 * 9 7 5 11 11 H 1.48504 * 109.46816 * 32.25312 * 9 7 5 12 12 H 1.48499 * 109.47060 * 152.25179 * 9 7 5 13 13 N 1.46898 * 109.47078 * 294.72982 * 3 2 1 14 14 C 1.47903 * 111.00255 * 302.14246 * 13 3 2 15 15 C 1.53991 * 107.05800 * 214.15781 * 14 13 3 16 16 C 1.54586 * 105.14217 * 1.21940 * 15 14 13 17 17 C 1.48530 * 111.00439 * 184.74136 * 13 3 2 18 18 H 1.09003 * 110.66529 * 41.28503 * 17 13 3 19 19 C 1.52998 * 110.66935 * 278.15981 * 17 13 3 20 20 C 1.52994 * 109.47324 * 60.95125 * 19 17 13 21 21 C 1.52996 * 109.47237 * 180.95827 * 19 17 13 22 22 O 1.42902 * 109.46990 * 300.95210 * 19 17 13 23 23 H 1.09001 * 109.47185 * 305.04785 * 1 2 3 24 24 H 1.09003 * 109.47466 * 65.05198 * 1 2 3 25 25 H 1.09007 * 109.47436 * 185.04747 * 1 2 3 26 26 H 1.09004 * 109.47060 * 240.00167 * 2 1 3 27 27 H 1.09003 * 109.47069 * 120.00467 * 2 1 3 28 28 H 0.96994 * 119.99846 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.91411 * 333.50866 * 14 13 3 30 30 H 1.08999 * 109.92411 * 94.79821 * 14 13 3 31 31 H 1.09000 * 110.31139 * 120.14159 * 15 14 13 32 32 H 1.09004 * 110.30641 * 242.20000 * 15 14 13 33 33 H 1.08998 * 110.72891 * 140.32060 * 16 15 14 34 34 H 1.08999 * 110.72620 * 263.60221 * 16 15 14 35 35 H 1.09000 * 109.46980 * 41.55502 * 20 19 17 36 36 H 1.09005 * 109.47568 * 161.55501 * 20 19 17 37 37 H 1.08998 * 109.47580 * 281.55424 * 20 19 17 38 38 H 1.08993 * 109.47430 * 59.99157 * 21 19 17 39 39 H 1.09005 * 109.47374 * 179.97438 * 21 19 17 40 40 H 1.09006 * 109.46810 * 299.99690 * 21 19 17 41 41 H 0.96706 * 113.99471 * 60.00210 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6016 1.9828 0.8390 5 6 3.5413 1.4445 0.1305 6 1 4.1535 1.8068 -0.6821 7 6 4.1333 0.9838 1.2873 8 7 5.4232 0.7281 1.3092 9 14 3.1033 0.7227 2.8237 10 1 3.0401 1.9882 3.5982 11 1 1.7304 0.3111 2.4351 12 1 3.7206 -0.3386 3.6590 13 7 1.6570 2.0973 -1.2580 14 6 2.1925 1.3607 -2.4234 15 6 2.5350 2.4067 -3.5003 16 6 2.1910 3.7717 -2.8614 17 6 2.2323 3.4639 -1.3434 18 1 3.2588 3.4728 -0.9769 19 6 1.3714 4.4619 -0.5664 20 6 1.3262 4.0566 0.9082 21 6 1.9746 5.8622 -0.6923 22 8 0.0459 4.4645 -1.1005 23 1 -0.3633 0.5901 0.8413 24 1 -0.3634 0.4335 -0.9318 25 1 -0.3634 -1.0237 0.0904 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 5.8398 0.4044 2.1231 29 1 3.0914 0.8150 -2.1366 30 1 1.4405 0.6692 -2.8033 31 1 3.5955 2.3615 -3.7480 32 1 1.9315 2.2423 -4.3930 33 1 2.9390 4.5199 -3.1237 34 1 1.1954 4.0983 -3.1617 35 1 2.3182 3.7376 1.2279 36 1 1.0070 4.9080 1.5094 37 1 0.6211 3.2356 1.0380 38 1 2.0069 6.1509 -1.7428 39 1 1.3610 6.5733 -0.1391 40 1 2.9857 5.8603 -0.2849 41 1 -0.3987 3.6070 -1.0537 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707167498.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:14 Heat of formation + Delta-G solvation = -49.752657 kcal Electronic energy + Delta-G solvation = -19729.750945 eV Core-core repulsion = 17030.486682 eV Total energy + Delta-G solvation = -2699.264263 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.44117 -36.34466 -34.21350 -32.04431 -31.78443 -29.87373 -27.41444 -26.80252 -26.62548 -22.90565 -21.77410 -20.58103 -19.29951 -18.88868 -17.11883 -16.16418 -15.40446 -14.77656 -14.21312 -14.16051 -13.44344 -13.33002 -12.88875 -12.76962 -12.47141 -12.31152 -12.02957 -11.79757 -11.68445 -11.56074 -11.24781 -10.93601 -10.84865 -10.78999 -10.61032 -10.39993 -10.38192 -10.05532 -9.80541 -9.61943 -9.35023 -9.20197 -9.16402 -8.50929 -7.24069 -6.17851 -4.13439 3.22341 3.32400 3.35382 4.35216 4.78804 4.89754 5.13364 5.30787 5.32708 5.52411 5.65819 5.75368 5.78711 6.00923 6.03413 6.09778 6.13302 6.23526 6.25055 6.26195 6.33416 6.42044 6.47174 6.52132 6.64197 6.67689 6.71238 6.74010 6.83502 6.86373 6.93756 6.99172 7.19361 7.30874 7.56819 7.97603 8.12006 8.30918 8.41451 8.87889 9.48728 10.94808 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021075 B = 0.010979 C = 0.010258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.290998 B = 2549.773481 C = 2729.009354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 C 0.158 3.842 4 H 0.055 0.945 5 C -0.545 4.545 6 H 0.075 0.925 7 C 0.080 3.920 8 N -0.892 5.892 9 Si 0.856 3.144 10 H -0.278 1.278 11 H -0.247 1.247 12 H -0.290 1.290 13 N -0.505 5.505 14 C 0.041 3.959 15 C -0.129 4.129 16 C -0.115 4.115 17 C 0.042 3.958 18 H 0.081 0.919 19 C 0.149 3.851 20 C -0.180 4.180 21 C -0.135 4.135 22 O -0.565 6.565 23 H 0.040 0.960 24 H 0.056 0.944 25 H 0.031 0.969 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.263 0.737 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.766 4.389 -4.253 9.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.158 4.158 3 C 0.050 3.950 4 H 0.072 0.928 5 C -0.583 4.583 6 H 0.093 0.907 7 C -0.123 4.123 8 N -0.529 5.529 9 Si 0.682 3.318 10 H -0.204 1.204 11 H -0.172 1.172 12 H -0.216 1.216 13 N -0.228 5.228 14 C -0.088 4.088 15 C -0.168 4.168 16 C -0.153 4.153 17 C -0.067 4.067 18 H 0.099 0.901 19 C 0.108 3.892 20 C -0.237 4.237 21 C -0.193 4.193 22 O -0.372 6.372 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -8.036 4.938 -4.246 10.344 hybrid contribution 0.600 -1.011 1.166 1.655 sum -7.436 3.928 -3.080 8.956 Atomic orbital electron populations 1.21741 0.97892 0.99134 1.01200 1.21995 0.93449 0.99337 1.01030 1.20187 0.94731 0.90824 0.89274 0.92766 1.21516 0.90657 1.43514 1.02588 0.90737 1.24912 0.94582 0.94082 0.98758 1.69979 1.10886 1.43987 1.28007 0.87356 0.82378 0.78215 0.83807 1.20449 1.17151 1.21615 1.64835 1.53818 1.01161 1.03021 1.22683 0.99284 0.96071 0.90714 1.22370 1.00379 0.95802 0.98217 1.22418 1.01312 0.96248 0.95341 1.23396 0.98824 0.90228 0.94280 0.90105 1.20879 0.82505 0.94128 0.91650 1.22739 1.03850 1.00714 0.96371 1.21732 1.00417 0.95056 1.02097 1.86319 1.28224 1.37802 1.84893 0.94063 0.92533 0.94985 0.92958 0.92734 0.92732 0.91764 0.92332 0.92439 0.92464 0.92517 0.90804 0.90384 0.93664 0.91572 0.92289 0.92557 0.91363 0.77228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.74 37.16 0.36 -2.13 16 2 C -0.12 -2.49 4.53 -26.73 -0.12 -2.61 16 3 C 0.16 3.38 0.78 -68.87 -0.05 3.33 16 4 H 0.05 1.19 2.86 -51.93 -0.15 1.04 16 5 C -0.54 -13.95 6.55 -34.44 -0.23 -14.18 16 6 H 0.07 2.12 6.30 -52.48 -0.33 1.79 16 7 C 0.08 2.17 5.35 -17.82 -0.10 2.07 16 8 N -0.89 -26.11 13.96 55.43 0.77 -25.33 16 9 Si 0.86 20.30 25.82 -169.99 -4.39 15.91 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.25 -5.51 5.41 56.52 0.31 -5.20 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 N -0.50 -9.52 4.01 -216.11 -0.87 -10.39 16 14 C 0.04 0.75 4.94 -2.75 -0.01 0.74 16 15 C -0.13 -2.10 6.93 -25.38 -0.18 -2.27 16 16 C -0.12 -1.86 5.57 -24.88 -0.14 -2.00 16 17 C 0.04 0.76 1.54 -65.79 -0.10 0.66 16 18 H 0.08 1.75 6.02 -51.93 -0.31 1.43 16 19 C 0.15 2.52 0.92 -90.63 -0.08 2.43 16 20 C -0.18 -3.18 7.25 37.15 0.27 -2.91 16 21 C -0.14 -2.03 8.60 37.16 0.32 -1.71 16 22 O -0.57 -9.36 11.96 -35.23 -0.42 -9.78 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.94 7.90 -51.93 -0.41 0.53 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 1.09 6.74 -51.93 -0.35 0.74 16 27 H 0.05 1.21 4.84 -51.93 -0.25 0.96 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.06 1.38 6.06 -51.93 -0.31 1.07 16 30 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.86 8.04 -51.93 -0.42 0.44 16 34 H 0.07 1.19 7.21 -51.93 -0.37 0.81 16 35 H 0.08 1.57 7.10 -51.93 -0.37 1.20 16 36 H 0.04 0.72 8.00 -51.93 -0.42 0.31 16 37 H 0.07 1.19 6.41 -51.93 -0.33 0.86 16 38 H 0.06 0.84 7.37 -51.93 -0.38 0.45 16 39 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.38 5.90 8.48 45.56 0.39 6.29 16 LS Contribution 296.64 15.07 4.47 4.47 Total: -1.00 -27.28 296.64 -6.70 -33.98 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -6.21 Total: 9.72 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -0.06 Total: -18.58 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.09 Total: -35.72 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -0.42 Total: -9.78 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.39 Total: 15.91 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.28 -6.70 -33.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707167498.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.768 kcal (2) G-P(sol) polarization free energy of solvation -27.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds