Wall clock time and date at job start Sun Mar 29 2020 23:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47280 * 2 1 4 4 H 1.09002 * 109.47002 * 54.72864 * 3 2 1 5 5 C 1.50698 * 109.47352 * 174.72889 * 3 2 1 6 6 H 1.08004 * 119.99806 * 114.49750 * 5 3 2 7 7 C 1.37875 * 119.99960 * 294.49970 * 5 3 2 8 8 N 1.31519 * 120.00094 * 166.17632 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 346.17355 * 7 5 3 10 10 H 1.48497 * 109.47124 * 272.25384 * 9 7 5 11 11 H 1.48504 * 109.46816 * 32.25312 * 9 7 5 12 12 H 1.48499 * 109.47060 * 152.25179 * 9 7 5 13 13 N 1.46898 * 109.47078 * 294.72982 * 3 2 1 14 14 C 1.47903 * 111.00255 * 302.14246 * 13 3 2 15 15 C 1.53991 * 107.05800 * 214.15781 * 14 13 3 16 16 C 1.54586 * 105.14217 * 1.21940 * 15 14 13 17 17 C 1.48530 * 111.00439 * 184.74136 * 13 3 2 18 18 H 1.09003 * 110.66529 * 41.28503 * 17 13 3 19 19 C 1.52998 * 110.66935 * 278.15981 * 17 13 3 20 20 C 1.52994 * 109.47324 * 60.95125 * 19 17 13 21 21 C 1.52996 * 109.47237 * 180.95827 * 19 17 13 22 22 O 1.42902 * 109.46990 * 300.95210 * 19 17 13 23 23 H 1.09001 * 109.47185 * 305.04785 * 1 2 3 24 24 H 1.09003 * 109.47466 * 65.05198 * 1 2 3 25 25 H 1.09007 * 109.47436 * 185.04747 * 1 2 3 26 26 H 1.09004 * 109.47060 * 240.00167 * 2 1 3 27 27 H 1.09003 * 109.47069 * 120.00467 * 2 1 3 28 28 H 0.96994 * 119.99846 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.91411 * 333.50866 * 14 13 3 30 30 H 1.08999 * 109.92411 * 94.79821 * 14 13 3 31 31 H 1.09000 * 110.31139 * 120.14159 * 15 14 13 32 32 H 1.09004 * 110.30641 * 242.20000 * 15 14 13 33 33 H 1.08998 * 110.72891 * 140.32060 * 16 15 14 34 34 H 1.08999 * 110.72620 * 263.60221 * 16 15 14 35 35 H 1.09000 * 109.46980 * 41.55502 * 20 19 17 36 36 H 1.09005 * 109.47568 * 161.55501 * 20 19 17 37 37 H 1.08998 * 109.47580 * 281.55424 * 20 19 17 38 38 H 1.08993 * 109.47430 * 59.99157 * 21 19 17 39 39 H 1.09005 * 109.47374 * 179.97438 * 21 19 17 40 40 H 1.09006 * 109.46810 * 299.99690 * 21 19 17 41 41 H 0.96706 * 113.99471 * 60.00210 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6016 1.9828 0.8390 5 6 3.5413 1.4445 0.1305 6 1 4.1535 1.8068 -0.6821 7 6 4.1333 0.9838 1.2873 8 7 5.4232 0.7281 1.3092 9 14 3.1033 0.7227 2.8237 10 1 3.0401 1.9882 3.5982 11 1 1.7304 0.3111 2.4351 12 1 3.7206 -0.3386 3.6590 13 7 1.6570 2.0973 -1.2580 14 6 2.1925 1.3607 -2.4234 15 6 2.5350 2.4067 -3.5003 16 6 2.1910 3.7717 -2.8614 17 6 2.2323 3.4639 -1.3434 18 1 3.2588 3.4728 -0.9769 19 6 1.3714 4.4619 -0.5664 20 6 1.3262 4.0566 0.9082 21 6 1.9746 5.8622 -0.6923 22 8 0.0459 4.4645 -1.1005 23 1 -0.3633 0.5901 0.8413 24 1 -0.3634 0.4335 -0.9318 25 1 -0.3634 -1.0237 0.0904 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 5.8398 0.4044 2.1231 29 1 3.0914 0.8150 -2.1366 30 1 1.4405 0.6692 -2.8033 31 1 3.5955 2.3615 -3.7480 32 1 1.9315 2.2423 -4.3930 33 1 2.9390 4.5199 -3.1237 34 1 1.1954 4.0983 -3.1617 35 1 2.3182 3.7376 1.2279 36 1 1.0070 4.9080 1.5094 37 1 0.6211 3.2356 1.0380 38 1 2.0069 6.1509 -1.7428 39 1 1.3610 6.5733 -0.1391 40 1 2.9857 5.8603 -0.2849 41 1 -0.3987 3.6070 -1.0537 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707167498.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:14 Heat of formation + Delta-G solvation = -69.126386 kcal Electronic energy + Delta-G solvation = -19730.591053 eV Core-core repulsion = 17030.486682 eV Total energy + Delta-G solvation = -2700.104371 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.94055 -37.79478 -35.83403 -34.00598 -33.14601 -31.36263 -28.86465 -28.49370 -28.09326 -24.65271 -23.26259 -22.02943 -20.70483 -20.61069 -18.95270 -17.68220 -17.00026 -16.45496 -15.78409 -15.61402 -15.05366 -14.77877 -14.64561 -14.35363 -13.98620 -13.87358 -13.44016 -13.28587 -13.04421 -13.00203 -12.72102 -12.64778 -12.41066 -12.24315 -12.21913 -11.91100 -11.85030 -11.67587 -11.40452 -11.30563 -11.00932 -10.95287 -10.55620 -10.49656 -8.93977 -8.29798 -6.26679 1.31325 1.36403 1.43636 2.34338 3.06072 3.32901 3.54949 3.91223 3.91446 4.19093 4.27230 4.36430 4.39403 4.48375 4.55943 4.71556 4.73700 4.78455 4.84602 4.95253 5.01073 5.04094 5.10130 5.12203 5.14995 5.20866 5.23532 5.29352 5.36571 5.39215 5.40934 5.52590 5.60330 5.64943 5.67747 6.22642 6.38558 6.43927 6.80655 7.03862 7.38346 8.86663 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021075 B = 0.010979 C = 0.010258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.290998 B = 2549.773481 C = 2729.009354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.122 4.122 3 C 0.163 3.837 4 H 0.059 0.941 5 C -0.526 4.526 6 H 0.033 0.967 7 C 0.023 3.977 8 N -0.945 5.945 9 Si 0.910 3.090 10 H -0.275 1.275 11 H -0.220 1.220 12 H -0.297 1.297 13 N -0.490 5.490 14 C 0.040 3.960 15 C -0.125 4.125 16 C -0.106 4.106 17 C 0.039 3.961 18 H 0.040 0.960 19 C 0.154 3.846 20 C -0.177 4.177 21 C -0.135 4.135 22 O -0.561 6.561 23 H 0.046 0.954 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.037 0.963 28 H 0.261 0.739 29 H 0.023 0.977 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.759 5.130 -4.738 12.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.160 4.160 3 C 0.055 3.945 4 H 0.077 0.923 5 C -0.565 4.565 6 H 0.051 0.949 7 C -0.175 4.175 8 N -0.585 5.585 9 Si 0.735 3.265 10 H -0.201 1.201 11 H -0.142 1.142 12 H -0.223 1.223 13 N -0.213 5.213 14 C -0.089 4.089 15 C -0.163 4.163 16 C -0.144 4.144 17 C -0.070 4.070 18 H 0.058 0.942 19 C 0.113 3.887 20 C -0.234 4.234 21 C -0.192 4.192 22 O -0.368 6.368 23 H 0.065 0.935 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -11.063 5.686 -4.749 13.314 hybrid contribution 1.582 -1.221 1.213 2.338 sum -9.480 4.465 -3.536 11.060 Atomic orbital electron populations 1.21645 0.94626 1.00670 1.02082 1.21933 0.96299 0.97924 0.99888 1.20095 0.91599 0.92010 0.90811 0.92315 1.21753 0.92853 1.41121 1.00777 0.94899 1.25678 0.95458 0.94492 1.01919 1.70126 1.12986 1.46705 1.28715 0.86464 0.82148 0.77955 0.79943 1.20054 1.14237 1.22339 1.64877 1.53008 1.01348 1.02042 1.22692 0.97994 0.96805 0.91360 1.22356 1.00546 0.94961 0.98445 1.22389 1.02302 0.96437 0.93313 1.23391 0.96947 0.90393 0.96234 0.94236 1.20816 0.82607 0.94583 0.90728 1.22685 1.01914 1.01431 0.97374 1.21736 1.00308 0.94128 1.03058 1.86327 1.27592 1.38257 1.84668 0.93509 0.91369 0.93111 0.93785 0.94394 0.93021 0.95834 0.90577 0.93205 0.89579 0.91524 0.89541 0.93479 0.91780 0.91660 0.91271 0.91140 0.91813 0.76596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.74 71.98 0.70 -3.50 16 2 C -0.12 -4.91 4.53 30.59 0.14 -4.77 16 3 C 0.16 6.95 0.78 44.17 0.03 6.99 16 4 H 0.06 2.50 2.86 -2.39 -0.01 2.50 16 5 C -0.53 -27.99 6.55 25.60 0.17 -27.82 16 6 H 0.03 1.99 6.30 -2.91 -0.02 1.97 16 7 C 0.02 1.26 5.35 84.65 0.45 1.71 16 8 N -0.95 -58.00 13.96 21.45 0.30 -57.70 16 9 Si 0.91 42.32 25.82 68.60 1.77 44.09 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.22 -9.15 5.41 99.48 0.54 -8.61 16 12 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 13 N -0.49 -17.97 4.01 -837.63 -3.36 -21.33 16 14 C 0.04 1.45 4.94 86.44 0.43 1.87 16 15 C -0.12 -3.85 6.93 31.47 0.22 -3.63 16 16 C -0.11 -3.23 5.57 31.80 0.18 -3.05 16 17 C 0.04 1.42 1.54 45.26 0.07 1.49 16 18 H 0.04 1.77 6.02 -2.39 -0.01 1.76 16 19 C 0.15 4.89 0.92 -10.80 -0.01 4.88 16 20 C -0.18 -5.99 7.25 71.98 0.52 -5.47 16 21 C -0.13 -3.76 8.60 71.98 0.62 -3.14 16 22 O -0.56 -16.68 11.96 -148.98 -1.78 -18.46 16 23 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.07 2.00 7.90 -2.39 -0.02 1.98 16 25 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 26 H 0.04 1.81 6.74 -2.38 -0.02 1.80 16 27 H 0.04 1.63 4.84 -2.39 -0.01 1.62 16 28 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 29 H 0.02 1.04 6.06 -2.39 -0.01 1.03 16 30 H 0.08 2.49 8.10 -2.39 -0.02 2.47 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.07 1.90 8.04 -2.39 -0.02 1.88 16 34 H 0.09 2.46 7.21 -2.39 -0.02 2.44 16 35 H 0.05 1.88 7.10 -2.39 -0.02 1.86 16 36 H 0.06 1.90 8.00 -2.38 -0.02 1.88 16 37 H 0.06 2.19 6.41 -2.39 -0.02 2.18 16 38 H 0.07 1.78 7.37 -2.39 -0.02 1.76 16 39 H 0.07 1.77 8.13 -2.38 -0.02 1.75 16 40 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.38 10.55 8.48 -74.05 -0.63 9.92 16 Total: -1.00 -60.69 296.64 0.66 -60.03 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.21 Total: 27.82 kcal Atomic # 6 Polarization: -37.97 SS G_CDS: 3.52 Total: -34.45 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -3.06 Total: -79.04 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -1.78 Total: -18.46 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.77 Total: 44.09 kcal Total: -60.69 0.66 -60.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707167498.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.096 kcal (2) G-P(sol) polarization free energy of solvation -60.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds