Wall clock time and date at job start Sun Mar 29 2020 23:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47100 * 2 1 4 4 H 1.09004 * 109.47127 * 57.88648 * 3 2 1 5 5 C 1.50695 * 109.47082 * 177.88177 * 3 2 1 6 6 H 1.08004 * 120.00136 * 114.38906 * 5 3 2 7 7 C 1.37879 * 120.00518 * 294.39344 * 5 3 2 8 8 N 1.31511 * 120.00209 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 119.99481 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.46590 * 90.00256 * 9 7 5 11 11 H 1.48497 * 109.46994 * 209.99907 * 9 7 5 12 12 H 1.48497 * 109.47255 * 330.00059 * 9 7 5 13 13 N 1.46899 * 109.47425 * 297.88714 * 3 2 1 14 14 C 1.48727 * 111.01227 * 328.46856 * 13 3 2 15 15 C 1.54378 * 104.51504 * 158.96836 * 14 13 3 16 16 C 1.54268 * 105.14996 * 336.27245 * 15 14 13 17 17 C 1.48556 * 111.00427 * 83.98419 * 13 3 2 18 18 H 1.09006 * 110.40757 * 319.73624 * 17 13 3 19 19 C 1.52994 * 110.51193 * 82.13069 * 17 13 3 20 20 C 1.53006 * 109.46933 * 173.69177 * 19 17 13 21 21 C 1.52997 * 109.47322 * 293.68847 * 19 17 13 22 22 O 1.42895 * 109.47429 * 53.69275 * 19 17 13 23 23 H 1.08999 * 109.46742 * 189.86633 * 1 2 3 24 24 H 1.08998 * 109.46603 * 309.86535 * 1 2 3 25 25 H 1.08996 * 109.47075 * 69.86767 * 1 2 3 26 26 H 1.09001 * 109.46888 * 240.00427 * 2 1 3 27 27 H 1.08995 * 109.47355 * 120.00829 * 2 1 3 28 28 H 0.97007 * 119.99886 * 180.02562 * 8 7 5 29 29 H 1.09001 * 110.38479 * 40.25215 * 14 13 3 30 30 H 1.08994 * 110.50789 * 277.75234 * 14 13 3 31 31 H 1.08993 * 110.32916 * 217.32707 * 15 14 13 32 32 H 1.09001 * 110.32428 * 95.21258 * 15 14 13 33 33 H 1.09001 * 110.31940 * 118.84351 * 16 15 14 34 34 H 1.08997 * 110.32204 * 241.04812 * 16 15 14 35 35 H 1.09000 * 109.47069 * 59.99592 * 20 19 17 36 36 H 1.08997 * 109.46815 * 180.02562 * 20 19 17 37 37 H 1.08998 * 109.46812 * 299.99710 * 20 19 17 38 38 H 1.08998 * 109.47493 * 72.56035 * 21 19 17 39 39 H 1.08994 * 109.47513 * 192.56818 * 21 19 17 40 40 H 1.09011 * 109.47224 * 312.56408 * 21 19 17 41 41 H 0.96694 * 114.00044 * 59.99457 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6461 1.9671 0.8705 5 6 3.5461 1.4428 0.0525 6 1 4.1156 1.8186 -0.7847 7 6 4.1972 0.9632 1.1693 8 7 5.5115 0.9640 1.2153 9 14 3.2122 0.3137 2.6176 10 1 2.9706 -1.1406 2.4395 11 1 3.9717 0.5392 3.8736 12 1 1.9114 1.0263 2.6910 13 7 1.5926 2.1201 -1.2241 14 6 1.4893 1.1618 -2.3568 15 6 0.5341 1.8470 -3.3575 16 6 -0.3037 2.8261 -2.5093 17 6 0.2140 2.6504 -1.0656 18 1 -0.4074 1.9378 -0.5230 19 6 0.2378 3.9970 -0.3396 20 6 -1.1705 4.5950 -0.3280 21 6 0.7169 3.7925 1.0989 22 8 1.1277 4.8872 -1.0161 23 1 -0.3633 -1.0125 0.1761 24 1 -0.3632 0.6587 0.7888 25 1 -0.3633 0.3537 -0.9648 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 5.9695 0.6263 2.0009 29 1 1.0684 0.2157 -2.0165 30 1 2.4665 1.0024 -2.8124 31 1 -0.1121 1.1079 -3.8309 32 1 1.1026 2.3908 -4.1119 33 1 -0.1449 3.8504 -2.8464 34 1 -1.3610 2.5675 -2.5666 35 1 -1.8493 3.9160 0.1880 36 1 -1.1534 5.5546 0.1888 37 1 -1.5118 4.7408 -1.3528 38 1 1.7862 3.5812 1.0992 39 1 0.5249 4.6959 1.6778 40 1 0.1808 2.9546 1.5448 41 1 0.8847 5.0629 -1.9354 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707167499.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:16 Heat of formation + Delta-G solvation = -22.896294 kcal Electronic energy + Delta-G solvation = -19768.502106 eV Core-core repulsion = 17070.402423 eV Total energy + Delta-G solvation = -2698.099683 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.93943 -36.68271 -34.09332 -31.99946 -31.89330 -29.88930 -27.73201 -27.10701 -26.91297 -22.82548 -21.95890 -20.85098 -19.32361 -19.15242 -16.71579 -16.40173 -16.00715 -14.97104 -14.42764 -14.21942 -13.65499 -13.59890 -12.99148 -12.83028 -12.52956 -12.28896 -12.04800 -11.89791 -11.77207 -11.60259 -11.37031 -11.20065 -10.99691 -10.93601 -10.73811 -10.61276 -10.30557 -10.06001 -9.95878 -9.61672 -9.51384 -9.33882 -8.81642 -8.47306 -7.21445 -5.98199 -3.93642 3.27383 3.36412 3.39216 4.44476 4.54713 4.90566 4.97823 5.08656 5.26538 5.31067 5.37848 5.52890 5.58657 5.67371 5.73439 5.77264 5.84922 5.91455 5.93975 6.05059 6.12042 6.15644 6.19012 6.29655 6.36576 6.43720 6.48910 6.52774 6.58046 6.60219 6.80148 6.85506 6.95432 7.16155 7.75089 7.96160 8.04872 8.26276 8.77527 9.15294 9.64558 11.15587 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024168 B = 0.010355 C = 0.009433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.276851 B = 2703.373763 C = 2967.500036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.165 4.165 3 C 0.157 3.843 4 H 0.059 0.941 5 C -0.485 4.485 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.902 5.902 9 Si 0.873 3.127 10 H -0.280 1.280 11 H -0.295 1.295 12 H -0.266 1.266 13 N -0.466 5.466 14 C 0.021 3.979 15 C -0.125 4.125 16 C -0.118 4.118 17 C 0.011 3.989 18 H 0.070 0.930 19 C 0.146 3.854 20 C -0.177 4.177 21 C -0.148 4.148 22 O -0.538 6.538 23 H 0.041 0.959 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.262 0.738 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.509 2.609 -4.880 15.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.204 4.204 3 C 0.049 3.951 4 H 0.076 0.924 5 C -0.524 4.524 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.702 3.298 10 H -0.207 1.207 11 H -0.222 1.222 12 H -0.191 1.191 13 N -0.188 5.188 14 C -0.107 4.107 15 C -0.163 4.163 16 C -0.156 4.156 17 C -0.098 4.098 18 H 0.087 0.913 19 C 0.105 3.895 20 C -0.235 4.235 21 C -0.205 4.205 22 O -0.343 6.343 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -13.642 2.986 -4.271 14.603 hybrid contribution -1.320 -1.264 0.551 1.909 sum -14.962 1.722 -3.720 15.513 Atomic orbital electron populations 1.22274 0.98538 1.00255 1.01053 1.22672 0.92986 1.02933 1.01796 1.20382 0.97126 0.87821 0.89736 0.92372 1.20921 0.88429 1.39723 1.03309 0.90208 1.24903 0.94635 0.95888 0.97860 1.69883 1.07092 1.47597 1.29555 0.87051 0.80550 0.79349 0.82804 1.20715 1.22169 1.19089 1.65539 1.17508 1.30445 1.05353 1.23371 0.99349 0.95547 0.92402 1.22307 0.97745 0.98048 0.98187 1.22290 0.98401 0.99613 0.95336 1.23759 0.93395 0.97175 0.95497 0.91282 1.20958 0.87684 0.87891 0.92954 1.22543 0.97683 1.01412 1.01870 1.22009 1.04912 1.00397 0.93170 1.86647 1.53580 1.66340 1.27716 0.94027 0.93292 0.92226 0.91300 0.92918 0.92835 0.92528 0.90521 0.92489 0.91655 0.91891 0.92300 0.92172 0.92109 0.92571 0.88677 0.93142 0.92218 0.79139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 7.86 37.16 0.29 -2.51 16 2 C -0.17 -3.48 4.45 -26.73 -0.12 -3.60 16 3 C 0.16 3.61 0.91 -68.87 -0.06 3.55 16 4 H 0.06 1.37 2.57 -51.93 -0.13 1.23 16 5 C -0.49 -13.67 9.30 -34.44 -0.32 -13.99 16 6 H 0.08 2.52 8.06 -52.48 -0.42 2.10 16 7 C 0.07 1.96 5.46 -17.82 -0.10 1.87 16 8 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 9 Si 0.87 21.76 24.68 -169.99 -4.20 17.56 16 10 H -0.28 -6.85 6.87 56.52 0.39 -6.46 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.27 -6.25 6.38 56.52 0.36 -5.89 16 13 N -0.47 -9.38 4.70 -215.48 -1.01 -10.39 16 14 C 0.02 0.38 5.31 -2.09 -0.01 0.37 16 15 C -0.12 -1.76 6.99 -25.35 -0.18 -1.93 16 16 C -0.12 -1.58 5.34 -25.35 -0.14 -1.72 16 17 C 0.01 0.18 1.22 -66.08 -0.08 0.10 16 18 H 0.07 1.13 4.00 -51.93 -0.21 0.92 16 19 C 0.15 2.37 0.91 -90.62 -0.08 2.28 16 20 C -0.18 -2.21 8.53 37.16 0.32 -1.89 16 21 C -0.15 -2.68 7.26 37.16 0.27 -2.41 16 22 O -0.54 -9.45 12.74 -35.23 -0.45 -9.90 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.82 7.41 -51.93 -0.38 0.44 16 25 H 0.06 0.93 4.77 -51.93 -0.25 0.69 16 26 H 0.07 1.45 6.05 -51.93 -0.31 1.13 16 27 H 0.05 1.20 4.02 -51.93 -0.21 0.99 16 28 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.06 1.00 3.80 -51.93 -0.20 0.80 16 30 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.77 5.85 -51.93 -0.30 0.46 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.61 7.00 -51.93 -0.36 0.24 16 38 H 0.09 2.10 6.35 -51.93 -0.33 1.77 16 39 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16 40 H 0.06 1.03 7.53 -51.92 -0.39 0.64 16 41 H 0.36 5.08 7.18 45.56 0.33 5.41 16 LS Contribution 287.96 15.07 4.34 4.34 Total: -1.00 -30.88 287.96 -6.50 -37.38 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -5.75 Total: 8.01 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -0.21 Total: -19.87 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.24 Total: -37.52 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.45 Total: -9.90 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.20 Total: 17.56 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.88 -6.50 -37.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707167499.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.482 kcal (2) G-P(sol) polarization free energy of solvation -30.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds