Wall clock time and date at job start Sun Mar 29 2020 23:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47100 * 2 1 4 4 H 1.09004 * 109.47127 * 57.88648 * 3 2 1 5 5 C 1.50695 * 109.47082 * 177.88177 * 3 2 1 6 6 H 1.08004 * 120.00136 * 114.38906 * 5 3 2 7 7 C 1.37879 * 120.00518 * 294.39344 * 5 3 2 8 8 N 1.31511 * 120.00209 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 119.99481 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.46590 * 90.00256 * 9 7 5 11 11 H 1.48497 * 109.46994 * 209.99907 * 9 7 5 12 12 H 1.48497 * 109.47255 * 330.00059 * 9 7 5 13 13 N 1.46899 * 109.47425 * 297.88714 * 3 2 1 14 14 C 1.48727 * 111.01227 * 328.46856 * 13 3 2 15 15 C 1.54378 * 104.51504 * 158.96836 * 14 13 3 16 16 C 1.54268 * 105.14996 * 336.27245 * 15 14 13 17 17 C 1.48556 * 111.00427 * 83.98419 * 13 3 2 18 18 H 1.09006 * 110.40757 * 319.73624 * 17 13 3 19 19 C 1.52994 * 110.51193 * 82.13069 * 17 13 3 20 20 C 1.53006 * 109.46933 * 173.69177 * 19 17 13 21 21 C 1.52997 * 109.47322 * 293.68847 * 19 17 13 22 22 O 1.42895 * 109.47429 * 53.69275 * 19 17 13 23 23 H 1.08999 * 109.46742 * 189.86633 * 1 2 3 24 24 H 1.08998 * 109.46603 * 309.86535 * 1 2 3 25 25 H 1.08996 * 109.47075 * 69.86767 * 1 2 3 26 26 H 1.09001 * 109.46888 * 240.00427 * 2 1 3 27 27 H 1.08995 * 109.47355 * 120.00829 * 2 1 3 28 28 H 0.97007 * 119.99886 * 180.02562 * 8 7 5 29 29 H 1.09001 * 110.38479 * 40.25215 * 14 13 3 30 30 H 1.08994 * 110.50789 * 277.75234 * 14 13 3 31 31 H 1.08993 * 110.32916 * 217.32707 * 15 14 13 32 32 H 1.09001 * 110.32428 * 95.21258 * 15 14 13 33 33 H 1.09001 * 110.31940 * 118.84351 * 16 15 14 34 34 H 1.08997 * 110.32204 * 241.04812 * 16 15 14 35 35 H 1.09000 * 109.47069 * 59.99592 * 20 19 17 36 36 H 1.08997 * 109.46815 * 180.02562 * 20 19 17 37 37 H 1.08998 * 109.46812 * 299.99710 * 20 19 17 38 38 H 1.08998 * 109.47493 * 72.56035 * 21 19 17 39 39 H 1.08994 * 109.47513 * 192.56818 * 21 19 17 40 40 H 1.09011 * 109.47224 * 312.56408 * 21 19 17 41 41 H 0.96694 * 114.00044 * 59.99457 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6461 1.9671 0.8705 5 6 3.5461 1.4428 0.0525 6 1 4.1156 1.8186 -0.7847 7 6 4.1972 0.9632 1.1693 8 7 5.5115 0.9640 1.2153 9 14 3.2122 0.3137 2.6176 10 1 2.9706 -1.1406 2.4395 11 1 3.9717 0.5392 3.8736 12 1 1.9114 1.0263 2.6910 13 7 1.5926 2.1201 -1.2241 14 6 1.4893 1.1618 -2.3568 15 6 0.5341 1.8470 -3.3575 16 6 -0.3037 2.8261 -2.5093 17 6 0.2140 2.6504 -1.0656 18 1 -0.4074 1.9378 -0.5230 19 6 0.2378 3.9970 -0.3396 20 6 -1.1705 4.5950 -0.3280 21 6 0.7169 3.7925 1.0989 22 8 1.1277 4.8872 -1.0161 23 1 -0.3633 -1.0125 0.1761 24 1 -0.3632 0.6587 0.7888 25 1 -0.3633 0.3537 -0.9648 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 5.9695 0.6263 2.0009 29 1 1.0684 0.2157 -2.0165 30 1 2.4665 1.0024 -2.8124 31 1 -0.1121 1.1079 -3.8309 32 1 1.1026 2.3908 -4.1119 33 1 -0.1449 3.8504 -2.8464 34 1 -1.3610 2.5675 -2.5666 35 1 -1.8493 3.9160 0.1880 36 1 -1.1534 5.5546 0.1888 37 1 -1.5118 4.7408 -1.3528 38 1 1.7862 3.5812 1.0992 39 1 0.5249 4.6959 1.6778 40 1 0.1808 2.9546 1.5448 41 1 0.8847 5.0629 -1.9354 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707167499.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:16 Heat of formation + Delta-G solvation = -47.415452 kcal Electronic energy + Delta-G solvation = -19769.565337 eV Core-core repulsion = 17070.402423 eV Total energy + Delta-G solvation = -2699.162914 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.31880 -38.06389 -35.67120 -33.95687 -33.25316 -31.33378 -29.11510 -28.80394 -28.07712 -24.65222 -23.34923 -22.12329 -20.81304 -20.61598 -18.54922 -17.87710 -17.59017 -16.44561 -16.08927 -15.64325 -15.00740 -14.96629 -14.57498 -14.27868 -14.16771 -13.71143 -13.51424 -13.30108 -13.08288 -12.94397 -12.73534 -12.67129 -12.52843 -12.27652 -12.21982 -12.05511 -11.80393 -11.62458 -11.38937 -11.30387 -11.08469 -10.90507 -10.69369 -10.40356 -8.72691 -8.24266 -6.23645 1.26465 1.31122 1.40865 2.32440 3.08398 3.26576 3.69551 3.75765 3.87489 4.18206 4.20405 4.26366 4.27175 4.35669 4.40054 4.44652 4.54548 4.72798 4.78601 4.81494 4.91971 4.95602 5.01002 5.04224 5.06261 5.07688 5.13404 5.16463 5.28605 5.32938 5.33651 5.41154 5.50469 5.59332 5.74264 6.13071 6.46892 6.80093 6.82228 7.14058 7.39437 8.94026 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024168 B = 0.010355 C = 0.009433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.276851 B = 2703.373763 C = 2967.500036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.165 4.165 3 C 0.164 3.836 4 H 0.059 0.941 5 C -0.486 4.486 6 H 0.023 0.977 7 C 0.006 3.994 8 N -0.957 5.957 9 Si 0.939 3.061 10 H -0.268 1.268 11 H -0.298 1.298 12 H -0.241 1.241 13 N -0.494 5.494 14 C 0.016 3.984 15 C -0.116 4.116 16 C -0.111 4.111 17 C 0.009 3.991 18 H 0.078 0.922 19 C 0.141 3.859 20 C -0.166 4.166 21 C -0.150 4.150 22 O -0.565 6.565 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.036 0.964 28 H 0.262 0.738 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.044 0.956 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.973 2.529 -5.101 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.204 4.204 3 C 0.055 3.945 4 H 0.076 0.924 5 C -0.525 4.525 6 H 0.041 0.959 7 C -0.190 4.190 8 N -0.599 5.599 9 Si 0.766 3.234 10 H -0.194 1.194 11 H -0.226 1.226 12 H -0.165 1.165 13 N -0.217 5.217 14 C -0.112 4.112 15 C -0.154 4.154 16 C -0.149 4.149 17 C -0.100 4.100 18 H 0.095 0.905 19 C 0.100 3.900 20 C -0.224 4.224 21 C -0.207 4.207 22 O -0.373 6.373 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -18.142 2.916 -4.525 18.924 hybrid contribution 0.181 -1.170 0.515 1.291 sum -17.961 1.746 -4.010 18.485 Atomic orbital electron populations 1.22176 0.94598 1.02082 1.02334 1.22536 0.96487 1.00740 1.00611 1.20112 0.93347 0.89588 0.91421 0.92366 1.21234 0.91689 1.38241 1.01320 0.95884 1.25778 0.95556 0.96459 1.01192 1.70068 1.09304 1.49793 1.30696 0.85958 0.79797 0.79390 0.78295 1.19379 1.22564 1.16457 1.65344 1.20933 1.30878 1.04545 1.23382 0.98856 0.96119 0.92839 1.22269 0.97274 0.98662 0.97229 1.22324 0.99832 1.00219 0.92522 1.23881 0.91045 0.97083 0.97942 0.90457 1.21100 0.89543 0.88037 0.91345 1.22424 0.94856 1.01455 1.03687 1.21993 1.01713 1.01397 0.95555 1.86614 1.54930 1.66719 1.29009 0.91751 0.92594 0.90527 0.92127 0.94598 0.92922 0.91951 0.93997 0.89698 0.91646 0.90561 0.88949 0.90683 0.91917 0.90285 0.93662 0.91832 0.91290 0.77541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.68 7.86 71.98 0.57 -4.11 16 2 C -0.16 -6.75 4.45 30.60 0.14 -6.62 16 3 C 0.16 7.59 0.91 44.17 0.04 7.63 16 4 H 0.06 2.72 2.57 -2.38 -0.01 2.71 16 5 C -0.49 -28.95 9.30 25.60 0.24 -28.71 16 6 H 0.02 1.57 8.06 -2.91 -0.02 1.55 16 7 C 0.01 0.34 5.46 84.66 0.46 0.81 16 8 N -0.96 -62.55 13.96 21.45 0.30 -62.25 16 9 Si 0.94 45.85 24.68 68.60 1.69 47.55 16 10 H -0.27 -12.45 6.87 99.48 0.68 -11.77 16 11 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 12 H -0.24 -10.65 6.38 99.48 0.63 -10.02 16 13 N -0.49 -19.78 4.70 -835.66 -3.92 -23.71 16 14 C 0.02 0.56 5.31 86.42 0.46 1.02 16 15 C -0.12 -2.91 6.99 31.49 0.22 -2.69 16 16 C -0.11 -2.45 5.34 31.49 0.17 -2.29 16 17 C 0.01 0.27 1.22 45.06 0.06 0.32 16 18 H 0.08 2.19 4.00 -2.38 -0.01 2.18 16 19 C 0.14 4.19 0.91 -10.79 -0.01 4.18 16 20 C -0.17 -3.40 8.53 71.98 0.61 -2.79 16 21 C -0.15 -5.23 7.26 71.98 0.52 -4.71 16 22 O -0.57 -19.21 12.74 -148.98 -1.90 -21.10 16 23 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.06 1.62 7.41 -2.39 -0.02 1.60 16 25 H 0.08 2.05 4.77 -2.39 -0.01 2.04 16 26 H 0.06 2.54 6.05 -2.39 -0.01 2.52 16 27 H 0.04 1.57 4.02 -2.39 -0.01 1.57 16 28 H 0.26 16.07 8.31 -92.70 -0.77 15.30 16 29 H 0.06 2.10 3.80 -2.39 -0.01 2.09 16 30 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.08 1.50 5.85 -2.39 -0.01 1.49 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 37 H 0.08 1.27 7.00 -2.39 -0.02 1.25 16 38 H 0.04 2.03 6.35 -2.39 -0.02 2.01 16 39 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 40 H 0.07 2.21 7.53 -2.38 -0.02 2.20 16 41 H 0.38 9.81 7.18 -74.06 -0.53 9.27 16 Total: -1.00 -72.77 287.96 0.04 -72.72 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.40 Total: 24.74 kcal Atomic # 6 Polarization: -41.42 SS G_CDS: 3.47 Total: -37.95 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -3.62 Total: -85.96 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -1.90 Total: -21.10 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.69 Total: 47.55 kcal Total: -72.77 0.04 -72.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707167499.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.308 kcal (2) G-P(sol) polarization free energy of solvation -72.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds