Wall clock time and date at job start Sun Mar 29 2020 23:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 H 1.08997 * 109.47129 * 304.99989 * 3 2 1 5 5 C 1.50697 * 109.47302 * 184.99623 * 3 2 1 6 6 H 1.07999 * 120.00058 * 240.00359 * 5 3 2 7 7 C 1.37878 * 119.99778 * 60.00100 * 5 3 2 8 8 N 1.31520 * 119.99985 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00027 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47036 * 90.00158 * 9 7 5 11 11 H 1.48500 * 109.46969 * 209.99720 * 9 7 5 12 12 H 1.48501 * 109.47160 * 329.99676 * 9 7 5 13 13 N 1.46905 * 109.47189 * 64.99712 * 3 2 1 14 14 C 1.46850 * 111.00112 * 189.99848 * 13 3 2 15 15 C 1.53036 * 109.52213 * 174.16200 * 14 13 3 16 16 C 1.53121 * 109.27927 * 59.17732 * 15 14 13 17 17 O 1.42905 * 109.51886 * 62.25322 * 16 15 14 18 18 C 1.52998 * 109.52503 * 182.37615 * 16 15 14 19 19 C 1.52996 * 109.47549 * 179.87749 * 18 16 15 20 20 C 1.53113 * 109.21637 * 302.31538 * 16 15 14 21 21 C 1.46847 * 110.99963 * 65.78926 * 13 3 2 22 22 H 1.08996 * 109.47652 * 299.99873 * 1 2 3 23 23 H 1.09002 * 109.47360 * 59.99899 * 1 2 3 24 24 H 1.09006 * 109.47188 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47153 * 240.00038 * 2 1 3 26 26 H 1.08999 * 109.46788 * 119.99621 * 2 1 3 27 27 H 0.97000 * 120.00084 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.45918 * 54.14857 * 14 13 3 29 29 H 1.08994 * 109.45442 * 294.17435 * 14 13 3 30 30 H 1.09001 * 109.50423 * 299.24028 * 15 14 13 31 31 H 1.08996 * 109.53618 * 179.14145 * 15 14 13 32 32 H 0.96696 * 114.00036 * 180.12520 * 17 16 15 33 33 H 1.09007 * 109.46758 * 299.87823 * 18 16 15 34 34 H 1.09001 * 109.46968 * 59.87145 * 18 16 15 35 35 H 1.09000 * 109.46967 * 300.00458 * 19 18 16 36 36 H 1.09001 * 109.46953 * 59.99703 * 19 18 16 37 37 H 1.08992 * 109.47383 * 180.02562 * 19 18 16 38 38 H 1.09000 * 109.50568 * 177.62339 * 20 16 15 39 39 H 1.08998 * 109.50381 * 297.74780 * 20 16 15 40 40 H 1.09005 * 109.46544 * 305.86079 * 21 13 3 41 41 H 1.09000 * 109.46250 * 65.83018 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1237 6 1 4.1471 1.8889 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 3.4062 0.3375 -2.1733 9 14 6.0050 0.8801 -1.3810 10 1 6.5538 -0.3519 -0.7596 11 1 6.3835 0.9215 -2.8163 12 1 6.5575 2.0721 -0.6888 13 7 1.6513 2.0993 1.2552 14 6 1.9122 3.5432 1.1964 15 6 1.3637 4.2139 2.4579 16 6 2.0392 3.6039 3.6893 17 8 3.4445 3.8584 3.6382 18 6 1.4523 4.2285 4.9566 19 6 2.1258 3.6160 6.1862 20 6 1.7930 2.0927 3.7024 21 6 2.3290 1.4836 2.4032 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8293 -0.0609 -2.9499 28 1 1.4228 3.9653 0.3187 29 1 2.9865 3.7156 1.1313 30 1 0.2872 4.0534 2.5166 31 1 1.5708 5.2834 2.4216 32 1 3.9371 3.4977 4.3880 33 1 1.6260 5.3046 4.9453 34 1 0.3804 4.0340 4.9947 35 1 1.9521 2.5400 6.1975 36 1 3.1976 3.8106 6.1481 37 1 1.7073 4.0607 7.0891 38 1 2.3073 1.6475 4.5541 39 1 0.7233 1.8989 3.7805 40 1 2.1425 0.4096 2.4019 41 1 3.4014 1.6658 2.3325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707254476.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:32 Heat of formation + Delta-G solvation = -65.606520 kcal Electronic energy + Delta-G solvation = -19068.279551 eV Core-core repulsion = 16368.327813 eV Total energy + Delta-G solvation = -2699.951738 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.38940 -36.56954 -33.44011 -32.60691 -31.45176 -30.16589 -29.48399 -26.33921 -24.35181 -22.73079 -22.56539 -20.72984 -19.49937 -18.87613 -16.56664 -15.99662 -15.38158 -14.77956 -14.36336 -14.07425 -13.85164 -13.57022 -13.41937 -12.79945 -12.48158 -12.22625 -11.91636 -11.73102 -11.50355 -11.34952 -11.13089 -11.01089 -10.95224 -10.77325 -10.66097 -10.48318 -10.42610 -9.87485 -9.66783 -9.58176 -9.50571 -9.06504 -8.97263 -8.29505 -6.98562 -5.91753 -4.04443 3.30708 3.37830 3.42308 4.45611 4.53636 4.88474 5.00215 5.09678 5.19970 5.31947 5.37708 5.54970 5.65692 5.84085 5.92561 6.01560 6.11640 6.12095 6.19102 6.27762 6.36817 6.42787 6.45785 6.51865 6.65136 6.70876 6.79286 6.94277 7.06861 7.17393 7.24889 7.44043 7.69078 7.83814 7.99172 8.07671 8.25280 8.43239 8.57663 9.06972 9.62748 11.07102 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025544 B = 0.007949 C = 0.006790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.871415 B = 3521.769621 C = 4122.898604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C 0.214 3.786 4 H 0.036 0.964 5 C -0.538 4.538 6 H 0.059 0.941 7 C 0.066 3.934 8 N -0.888 5.888 9 Si 0.885 3.115 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.534 5.534 14 C 0.066 3.934 15 C -0.099 4.099 16 C 0.134 3.866 17 O -0.553 6.553 18 C -0.149 4.149 19 C -0.158 4.158 20 C -0.141 4.141 21 C 0.066 3.934 22 H 0.047 0.953 23 H 0.038 0.962 24 H 0.024 0.976 25 H 0.091 0.909 26 H 0.031 0.969 27 H 0.260 0.740 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.365 0.635 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.932 4.492 12.271 13.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.107 3.893 4 H 0.054 0.946 5 C -0.577 4.577 6 H 0.077 0.923 7 C -0.135 4.135 8 N -0.527 5.527 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.258 5.258 14 C -0.062 4.062 15 C -0.137 4.137 16 C 0.093 3.907 17 O -0.358 6.358 18 C -0.187 4.187 19 C -0.215 4.215 20 C -0.179 4.179 21 C -0.063 4.063 22 H 0.066 0.934 23 H 0.057 0.943 24 H 0.043 0.957 25 H 0.109 0.891 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.212 0.788 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.603 4.638 11.581 13.297 hybrid contribution 2.085 -0.237 0.285 2.118 sum -2.517 4.400 11.866 12.904 Atomic orbital electron populations 1.21703 0.98942 0.98287 1.00530 1.21595 0.92175 0.99313 1.01804 1.19250 0.93059 0.91091 0.85858 0.94593 1.21803 0.92974 1.37563 1.05396 0.92323 1.24913 0.97694 0.95208 0.95723 1.69881 1.34666 1.38654 1.09479 0.86698 0.86464 0.78347 0.77122 1.20808 1.21288 1.20024 1.62410 1.56929 1.01748 1.04727 1.21748 0.99501 0.89741 0.95249 1.21597 0.99338 0.98845 0.93940 1.21256 0.81179 0.94111 0.94132 1.86617 1.18889 1.80686 1.49631 1.22208 1.00686 1.00609 0.95153 1.21838 1.00621 1.01328 0.97681 1.22362 1.01851 0.95139 0.98576 1.21823 0.97233 0.98113 0.89100 0.93398 0.94292 0.95727 0.89052 0.95003 0.93026 0.92236 0.93783 0.90839 0.92158 0.78787 0.91713 0.91297 0.92179 0.92755 0.92822 0.92392 0.91263 0.91614 0.93843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.80 37.16 0.36 -2.46 16 2 C -0.11 -2.65 5.16 -26.73 -0.14 -2.78 16 3 C 0.21 5.33 1.70 -68.86 -0.12 5.22 16 4 H 0.04 1.00 7.99 -51.93 -0.41 0.59 16 5 C -0.54 -14.65 7.23 -34.44 -0.25 -14.90 16 6 H 0.06 1.64 5.84 -52.49 -0.31 1.33 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -25.30 11.30 55.43 0.63 -24.67 16 9 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.53 -11.36 4.06 -227.99 -0.93 -12.28 16 14 C 0.07 1.34 5.05 -3.83 -0.02 1.32 16 15 C -0.10 -1.61 5.11 -26.65 -0.14 -1.74 16 16 C 0.13 1.96 0.74 -90.50 -0.07 1.90 16 17 O -0.55 -8.82 11.80 -35.23 -0.42 -9.24 16 18 C -0.15 -1.73 5.21 -26.73 -0.14 -1.87 16 19 C -0.16 -1.55 9.26 37.16 0.34 -1.20 16 20 C -0.14 -2.17 4.67 -26.58 -0.12 -2.29 16 21 C 0.07 1.30 4.65 -3.76 -0.02 1.28 16 22 H 0.05 0.94 7.75 -51.93 -0.40 0.54 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.09 2.45 5.95 -51.93 -0.31 2.14 16 26 H 0.03 0.75 6.22 -51.93 -0.32 0.42 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.06 1.21 8.02 -51.93 -0.42 0.79 16 29 H 0.04 1.01 6.91 -51.93 -0.36 0.65 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.37 4.57 7.34 45.56 0.33 4.91 16 33 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.59 6.49 -51.93 -0.34 0.25 16 36 H 0.05 0.50 6.78 -51.93 -0.35 0.15 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.78 6.57 -51.93 -0.34 0.44 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.34 6.12 -51.93 -0.32 1.03 16 41 H 0.04 0.96 5.99 -51.93 -0.31 0.65 16 LS Contribution 303.31 15.07 4.57 4.57 Total: -1.00 -28.65 303.31 -7.93 -36.58 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.37 Total: 4.27 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -0.39 Total: -15.80 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.30 Total: -36.96 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.42 Total: -9.24 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.65 -7.93 -36.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707254476.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.026 kcal (2) G-P(sol) polarization free energy of solvation -28.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds