Wall clock time and date at job start Sun Mar 29 2020 23:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 H 1.08997 * 109.47129 * 304.99989 * 3 2 1 5 5 C 1.50697 * 109.47302 * 184.99623 * 3 2 1 6 6 H 1.07999 * 120.00058 * 240.00359 * 5 3 2 7 7 C 1.37878 * 119.99778 * 60.00100 * 5 3 2 8 8 N 1.31520 * 119.99985 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00027 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47036 * 90.00158 * 9 7 5 11 11 H 1.48500 * 109.46969 * 209.99720 * 9 7 5 12 12 H 1.48501 * 109.47160 * 329.99676 * 9 7 5 13 13 N 1.46905 * 109.47189 * 64.99712 * 3 2 1 14 14 C 1.46850 * 111.00112 * 189.99848 * 13 3 2 15 15 C 1.53036 * 109.52213 * 174.16200 * 14 13 3 16 16 C 1.53121 * 109.27927 * 59.17732 * 15 14 13 17 17 O 1.42905 * 109.51886 * 62.25322 * 16 15 14 18 18 C 1.52998 * 109.52503 * 182.37615 * 16 15 14 19 19 C 1.52996 * 109.47549 * 179.87749 * 18 16 15 20 20 C 1.53113 * 109.21637 * 302.31538 * 16 15 14 21 21 C 1.46847 * 110.99963 * 65.78926 * 13 3 2 22 22 H 1.08996 * 109.47652 * 299.99873 * 1 2 3 23 23 H 1.09002 * 109.47360 * 59.99899 * 1 2 3 24 24 H 1.09006 * 109.47188 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47153 * 240.00038 * 2 1 3 26 26 H 1.08999 * 109.46788 * 119.99621 * 2 1 3 27 27 H 0.97000 * 120.00084 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.45918 * 54.14857 * 14 13 3 29 29 H 1.08994 * 109.45442 * 294.17435 * 14 13 3 30 30 H 1.09001 * 109.50423 * 299.24028 * 15 14 13 31 31 H 1.08996 * 109.53618 * 179.14145 * 15 14 13 32 32 H 0.96696 * 114.00036 * 180.12520 * 17 16 15 33 33 H 1.09007 * 109.46758 * 299.87823 * 18 16 15 34 34 H 1.09001 * 109.46968 * 59.87145 * 18 16 15 35 35 H 1.09000 * 109.46967 * 300.00458 * 19 18 16 36 36 H 1.09001 * 109.46953 * 59.99703 * 19 18 16 37 37 H 1.08992 * 109.47383 * 180.02562 * 19 18 16 38 38 H 1.09000 * 109.50568 * 177.62339 * 20 16 15 39 39 H 1.08998 * 109.50381 * 297.74780 * 20 16 15 40 40 H 1.09005 * 109.46544 * 305.86079 * 21 13 3 41 41 H 1.09000 * 109.46250 * 65.83018 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1237 6 1 4.1471 1.8889 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 3.4062 0.3375 -2.1733 9 14 6.0050 0.8801 -1.3810 10 1 6.5538 -0.3519 -0.7596 11 1 6.3835 0.9215 -2.8163 12 1 6.5575 2.0721 -0.6888 13 7 1.6513 2.0993 1.2552 14 6 1.9122 3.5432 1.1964 15 6 1.3637 4.2139 2.4579 16 6 2.0392 3.6039 3.6893 17 8 3.4445 3.8584 3.6382 18 6 1.4523 4.2285 4.9566 19 6 2.1258 3.6160 6.1862 20 6 1.7930 2.0927 3.7024 21 6 2.3290 1.4836 2.4032 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8293 -0.0609 -2.9499 28 1 1.4228 3.9653 0.3187 29 1 2.9865 3.7156 1.1313 30 1 0.2872 4.0534 2.5166 31 1 1.5708 5.2834 2.4216 32 1 3.9371 3.4977 4.3880 33 1 1.6260 5.3046 4.9453 34 1 0.3804 4.0340 4.9947 35 1 1.9521 2.5400 6.1975 36 1 3.1976 3.8106 6.1481 37 1 1.7073 4.0607 7.0891 38 1 2.3073 1.6475 4.5541 39 1 0.7233 1.8989 3.7805 40 1 2.1425 0.4096 2.4019 41 1 3.4014 1.6658 2.3325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707254476.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:31 Heat of formation + Delta-G solvation = -84.792541 kcal Electronic energy + Delta-G solvation = -19069.111520 eV Core-core repulsion = 16368.327813 eV Total energy + Delta-G solvation = -2700.783706 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.75578 -38.18269 -35.16033 -33.85287 -33.26974 -31.64079 -30.89606 -28.20631 -25.82345 -24.37742 -24.10158 -22.03870 -21.04195 -20.57192 -18.43485 -17.32835 -17.09690 -16.37451 -15.89297 -15.44195 -15.22847 -15.10502 -14.86783 -14.65093 -13.84490 -13.56890 -13.44085 -13.18882 -13.02455 -12.91212 -12.76004 -12.50493 -12.47285 -12.33051 -12.20653 -11.96705 -11.77202 -11.66358 -11.53435 -11.29628 -11.07720 -10.81925 -10.47550 -10.36023 -8.86165 -8.02058 -6.24684 1.34091 1.35913 1.45454 2.39373 3.14544 3.34662 3.57495 3.85441 3.93645 4.00170 4.39572 4.42492 4.52730 4.62333 4.67174 4.72281 4.76288 4.77622 4.86528 4.92571 5.04513 5.06368 5.10876 5.14060 5.21302 5.28372 5.33792 5.34720 5.43068 5.46484 5.51618 5.57032 5.66877 5.81168 6.09896 6.24279 6.42715 6.74024 6.96136 6.98091 7.45693 8.91935 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025544 B = 0.007949 C = 0.006790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.871415 B = 3521.769621 C = 4122.898604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.218 3.782 4 H -0.001 1.001 5 C -0.547 4.547 6 H 0.045 0.955 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.944 3.056 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.278 1.278 13 N -0.525 5.525 14 C 0.068 3.932 15 C -0.095 4.095 16 C 0.133 3.867 17 O -0.576 6.576 18 C -0.139 4.139 19 C -0.156 4.156 20 C -0.131 4.131 21 C 0.068 3.932 22 H 0.058 0.942 23 H 0.031 0.969 24 H 0.046 0.954 25 H 0.061 0.939 26 H 0.031 0.969 27 H 0.261 0.739 28 H 0.048 0.952 29 H 0.009 0.991 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.379 0.621 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.481 4.726 14.483 15.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.111 3.889 4 H 0.017 0.983 5 C -0.587 4.587 6 H 0.063 0.937 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.770 3.230 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.203 1.203 13 N -0.249 5.249 14 C -0.061 4.061 15 C -0.133 4.133 16 C 0.093 3.907 17 O -0.384 6.384 18 C -0.177 4.177 19 C -0.213 4.213 20 C -0.169 4.169 21 C -0.060 4.060 22 H 0.077 0.923 23 H 0.050 0.950 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.027 0.973 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.228 0.772 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -5.151 4.871 13.815 15.528 hybrid contribution 2.271 -0.290 -0.424 2.328 sum -2.880 4.582 13.391 14.443 Atomic orbital electron populations 1.21559 0.96124 0.99817 1.00698 1.21424 0.94642 0.98016 1.00216 1.19045 0.91650 0.91670 0.86562 0.98268 1.21986 0.94298 1.37259 1.05115 0.93666 1.25597 1.01671 0.95086 0.95560 1.70001 1.36110 1.39160 1.09805 0.85777 0.81726 0.78260 0.77187 1.20015 1.20678 1.20319 1.62397 1.56553 1.02205 1.03747 1.21742 0.97428 0.89417 0.97476 1.21587 1.00227 0.99049 0.92411 1.21287 0.80828 0.93604 0.94999 1.86589 1.19828 1.80999 1.50955 1.22095 1.01213 1.00512 0.93868 1.21837 1.00783 1.01409 0.97313 1.22309 1.02515 0.95597 0.96489 1.21826 0.95598 0.97916 0.90678 0.92253 0.94989 0.93497 0.92092 0.94998 0.92958 0.93358 0.97310 0.89202 0.91146 0.77163 0.91503 0.90178 0.91957 0.92441 0.91316 0.89905 0.90115 0.92539 0.96821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.80 71.98 0.71 -4.34 16 2 C -0.10 -5.09 5.16 30.59 0.16 -4.93 16 3 C 0.22 11.25 1.70 44.17 0.08 11.33 16 4 H 0.00 -0.04 7.99 -2.39 -0.02 -0.05 16 5 C -0.55 -30.86 7.23 25.60 0.19 -30.67 16 6 H 0.05 2.63 5.84 -2.91 -0.02 2.61 16 7 C 0.02 1.15 5.29 84.65 0.45 1.60 16 8 N -0.91 -53.26 11.30 21.45 0.24 -53.01 16 9 Si 0.94 45.17 29.54 68.60 2.03 47.19 16 10 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 13 N -0.53 -22.61 4.06 -875.23 -3.55 -26.17 16 14 C 0.07 2.80 5.05 86.32 0.44 3.24 16 15 C -0.10 -2.93 5.11 30.65 0.16 -2.78 16 16 C 0.13 3.61 0.74 -10.72 -0.01 3.60 16 17 O -0.58 -17.65 11.80 -148.98 -1.76 -19.41 16 18 C -0.14 -2.74 5.21 30.59 0.16 -2.58 16 19 C -0.16 -2.48 9.26 71.98 0.67 -1.81 16 20 C -0.13 -3.72 4.67 30.69 0.14 -3.58 16 21 C 0.07 2.68 4.65 86.37 0.40 3.08 16 22 H 0.06 2.25 7.75 -2.39 -0.02 2.23 16 23 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 25 H 0.06 3.35 5.95 -2.39 -0.01 3.34 16 26 H 0.03 1.51 6.22 -2.39 -0.01 1.50 16 27 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 28 H 0.05 2.04 8.02 -2.39 -0.02 2.02 16 29 H 0.01 0.41 6.91 -2.39 -0.02 0.39 16 30 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.38 8.83 7.34 -74.06 -0.54 8.29 16 33 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 0.97 6.49 -2.39 -0.02 0.95 16 36 H 0.06 0.88 6.78 -2.39 -0.02 0.86 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 1.96 6.57 -2.39 -0.02 1.95 16 39 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.06 2.29 6.12 -2.38 -0.01 2.28 16 41 H 0.01 0.61 5.99 -2.39 -0.01 0.60 16 Total: -1.00 -63.34 303.31 0.94 -62.40 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.46 Total: 16.82 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: 3.53 Total: -27.83 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -3.31 Total: -79.18 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -1.76 Total: -19.41 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -63.34 0.94 -62.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707254476.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.391 kcal (2) G-P(sol) polarization free energy of solvation -63.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds