Wall clock time and date at job start Sun Mar 29 2020 23:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47244 * 2 1 4 4 H 1.09007 * 109.46971 * 55.81762 * 3 2 1 5 5 C 1.50703 * 109.47360 * 175.81811 * 3 2 1 6 6 H 1.07999 * 119.99810 * 120.00254 * 5 3 2 7 7 C 1.37877 * 119.99835 * 300.00337 * 5 3 2 8 8 N 1.31511 * 119.99957 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99607 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.47096 * 89.99915 * 9 7 5 11 11 H 1.48497 * 109.46981 * 209.99862 * 9 7 5 12 12 H 1.48499 * 109.47371 * 330.00294 * 9 7 5 13 13 N 1.46901 * 109.47335 * 295.82142 * 3 2 1 14 14 C 1.46846 * 111.00243 * 170.15754 * 13 3 2 15 15 C 1.53039 * 109.52531 * 185.84203 * 14 13 3 16 16 C 1.53121 * 109.27282 * 300.81779 * 15 14 13 17 17 O 1.42901 * 109.52483 * 297.68732 * 16 15 14 18 18 C 1.53006 * 109.52017 * 177.55622 * 16 15 14 19 19 C 1.52996 * 109.46799 * 185.12270 * 18 16 15 20 20 C 1.53125 * 109.21259 * 57.62532 * 16 15 14 21 21 C 1.46848 * 110.99968 * 294.36955 * 13 3 2 22 22 H 1.09002 * 109.47148 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47051 * 299.99405 * 1 2 3 24 24 H 1.08997 * 109.47112 * 60.00339 * 1 2 3 25 25 H 1.09005 * 109.47228 * 239.99896 * 2 1 3 26 26 H 1.08997 * 109.47134 * 120.00218 * 2 1 3 27 27 H 0.97007 * 119.99689 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.46440 * 65.81670 * 14 13 3 29 29 H 1.09000 * 109.45974 * 305.85223 * 14 13 3 30 30 H 1.08998 * 109.50455 * 180.88023 * 15 14 13 31 31 H 1.08995 * 109.50387 * 60.75607 * 15 14 13 32 32 H 0.96697 * 113.99816 * 179.87696 * 17 16 15 33 33 H 1.08995 * 109.47477 * 305.12937 * 18 16 15 34 34 H 1.09004 * 109.46695 * 65.13375 * 18 16 15 35 35 H 1.09006 * 109.46983 * 179.97438 * 19 18 16 36 36 H 1.08995 * 109.47651 * 300.00560 * 19 18 16 37 37 H 1.08999 * 109.46969 * 60.00755 * 19 18 16 38 38 H 1.09001 * 109.50035 * 62.31673 * 20 16 15 39 39 H 1.09002 * 109.50182 * 182.43293 * 20 16 15 40 40 H 1.09008 * 109.46016 * 294.17507 * 21 13 3 41 41 H 1.08997 * 109.46505 * 54.14808 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6167 1.9775 0.8502 5 6 3.5434 1.4437 0.1036 6 1 4.1382 1.8920 -0.6785 7 6 4.1596 0.8725 1.1968 8 7 3.4353 0.3270 2.1494 9 14 6.0232 0.8735 1.3248 10 1 6.4705 2.1031 2.0273 11 1 6.4676 -0.3212 2.0866 12 1 6.6130 0.8396 -0.0376 13 7 1.6345 2.1052 -1.2467 14 6 1.8998 3.5483 -1.1860 15 6 1.3343 4.2254 -2.4365 16 6 1.9903 3.6188 -3.6800 17 8 3.3965 3.8710 -3.6493 18 6 1.3850 4.2488 -4.9362 19 6 1.9477 3.5532 -6.1773 20 6 1.7416 2.1079 -3.6947 21 6 2.2938 1.4925 -2.4070 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.8688 -0.0751 2.9183 28 1 2.9753 3.7180 -1.1358 29 1 1.4243 3.9679 -0.2994 30 1 1.5451 5.2941 -2.3985 31 1 0.2567 4.0677 -2.4800 32 1 3.8771 3.5122 -4.4079 33 1 0.3014 4.1332 -4.9146 34 1 1.6368 5.3089 -4.9683 35 1 1.5162 4.0017 -7.0722 36 1 3.0313 3.6689 -6.1988 37 1 1.6960 2.4932 -6.1451 38 1 0.6705 1.9161 -3.7586 39 1 2.2432 1.6650 -4.5552 40 1 3.3676 1.6719 -2.3512 41 1 2.1046 0.4191 -2.4074 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707254479.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:34 Heat of formation + Delta-G solvation = -65.480579 kcal Electronic energy + Delta-G solvation = -19073.369873 eV Core-core repulsion = 16373.423596 eV Total energy + Delta-G solvation = -2699.946277 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.39348 -36.56370 -33.44351 -32.64208 -31.45403 -30.17377 -29.44608 -26.33022 -24.36761 -22.75330 -22.54524 -20.73089 -19.49813 -18.87317 -16.56276 -15.97817 -15.38828 -14.77754 -14.37386 -14.03852 -13.87218 -13.55341 -13.41989 -12.80344 -12.51859 -12.24622 -11.90950 -11.72689 -11.50076 -11.35814 -11.12585 -11.01762 -10.92449 -10.75623 -10.64913 -10.48501 -10.44843 -9.86748 -9.66495 -9.58593 -9.50410 -9.06519 -8.97368 -8.29459 -6.98567 -5.91802 -4.04401 3.31056 3.37895 3.41825 4.45580 4.53720 4.88564 5.00384 5.09753 5.20173 5.31991 5.38183 5.55307 5.65495 5.84587 5.92820 6.01420 6.11574 6.12444 6.19114 6.27815 6.37001 6.43294 6.45686 6.51844 6.65157 6.70879 6.79427 6.94425 7.06804 7.17345 7.24819 7.44099 7.69069 7.83795 7.99179 8.07641 8.25367 8.43243 8.57573 9.06970 9.62788 11.07114 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025607 B = 0.007948 C = 0.006804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.176865 B = 3522.016514 C = 4114.266557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C 0.214 3.786 4 H 0.036 0.964 5 C -0.538 4.538 6 H 0.059 0.941 7 C 0.066 3.934 8 N -0.888 5.888 9 Si 0.886 3.114 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.534 5.534 14 C 0.066 3.934 15 C -0.099 4.099 16 C 0.134 3.866 17 O -0.553 6.553 18 C -0.149 4.149 19 C -0.157 4.157 20 C -0.141 4.141 21 C 0.066 3.934 22 H 0.024 0.976 23 H 0.038 0.962 24 H 0.047 0.953 25 H 0.031 0.969 26 H 0.091 0.909 27 H 0.260 0.740 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.365 0.635 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.141 4.503 -12.205 13.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.107 3.893 4 H 0.054 0.946 5 C -0.577 4.577 6 H 0.077 0.923 7 C -0.135 4.135 8 N -0.527 5.527 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.258 5.258 14 C -0.062 4.062 15 C -0.137 4.137 16 C 0.093 3.907 17 O -0.358 6.358 18 C -0.187 4.187 19 C -0.214 4.214 20 C -0.179 4.179 21 C -0.063 4.063 22 H 0.043 0.957 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.109 0.891 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.212 0.788 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.801 4.639 -11.509 13.305 hybrid contribution 2.084 -0.216 -0.304 2.117 sum -2.717 4.423 -11.813 12.903 Atomic orbital electron populations 1.21702 0.98941 0.98277 1.00547 1.21591 0.92155 0.99300 1.01820 1.19249 0.92935 0.91041 0.86039 0.94608 1.21802 0.92918 1.37327 1.05698 0.92327 1.24911 0.97743 0.95184 0.95698 1.69881 1.34746 1.38454 1.09597 0.86692 0.86443 0.77417 0.78022 1.20802 1.21302 1.20070 1.62411 1.57208 1.01719 1.04465 1.21748 0.99417 0.89739 0.95341 1.21598 0.99423 0.98857 0.93848 1.21260 0.81111 0.94112 0.94192 1.86615 1.19245 1.80883 1.49059 1.22216 1.01003 1.00309 0.95155 1.21851 1.00846 1.01165 0.97575 1.22352 1.01847 0.95142 0.98600 1.21801 0.97300 0.98103 0.89080 0.95735 0.94297 0.93376 0.94988 0.89073 0.93028 0.93797 0.92238 0.92158 0.90834 0.78798 0.91279 0.91682 0.92881 0.92859 0.92078 0.91269 0.92328 0.93851 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.79 37.16 0.36 -2.46 16 2 C -0.11 -2.64 5.14 -26.74 -0.14 -2.78 16 3 C 0.21 5.33 1.71 -68.87 -0.12 5.21 16 4 H 0.04 1.00 7.99 -51.92 -0.41 0.58 16 5 C -0.54 -14.66 7.23 -34.44 -0.25 -14.91 16 6 H 0.06 1.64 5.84 -52.49 -0.31 1.33 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -25.30 11.30 55.43 0.63 -24.67 16 9 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.53 -11.35 4.02 -228.08 -0.92 -12.27 16 14 C 0.07 1.34 5.05 -3.83 -0.02 1.32 16 15 C -0.10 -1.61 5.11 -26.65 -0.14 -1.74 16 16 C 0.13 1.96 0.74 -90.49 -0.07 1.90 16 17 O -0.55 -8.81 11.84 -35.23 -0.42 -9.22 16 18 C -0.15 -1.73 5.24 -26.73 -0.14 -1.87 16 19 C -0.16 -1.55 9.22 37.16 0.34 -1.20 16 20 C -0.14 -2.17 4.51 -26.65 -0.12 -2.29 16 21 C 0.07 1.30 4.65 -3.83 -0.02 1.28 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.95 7.73 -51.93 -0.40 0.55 16 25 H 0.03 0.75 6.25 -51.93 -0.32 0.43 16 26 H 0.09 2.44 5.97 -51.93 -0.31 2.13 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.04 1.01 6.90 -51.93 -0.36 0.65 16 29 H 0.06 1.21 8.02 -51.93 -0.42 0.79 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.37 4.56 7.53 45.56 0.34 4.90 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.49 6.89 -51.93 -0.36 0.14 16 37 H 0.06 0.60 6.41 -51.93 -0.33 0.27 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.79 6.51 -51.93 -0.34 0.45 16 40 H 0.04 0.96 6.00 -51.92 -0.31 0.65 16 41 H 0.07 1.34 6.13 -51.93 -0.32 1.03 16 LS Contribution 303.31 15.07 4.57 4.57 Total: -1.00 -28.64 303.31 -7.92 -36.56 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.36 Total: 4.26 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -0.39 Total: -15.81 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: -0.29 Total: -36.94 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.42 Total: -9.22 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.64 -7.92 -36.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707254479.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.925 kcal (2) G-P(sol) polarization free energy of solvation -28.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds