Wall clock time and date at job start Sun Mar 29 2020 23:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47244 * 2 1 4 4 H 1.09007 * 109.46971 * 55.81762 * 3 2 1 5 5 C 1.50703 * 109.47360 * 175.81811 * 3 2 1 6 6 H 1.07999 * 119.99810 * 120.00254 * 5 3 2 7 7 C 1.37877 * 119.99835 * 300.00337 * 5 3 2 8 8 N 1.31511 * 119.99957 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99607 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.47096 * 89.99915 * 9 7 5 11 11 H 1.48497 * 109.46981 * 209.99862 * 9 7 5 12 12 H 1.48499 * 109.47371 * 330.00294 * 9 7 5 13 13 N 1.46901 * 109.47335 * 295.82142 * 3 2 1 14 14 C 1.46846 * 111.00243 * 170.15754 * 13 3 2 15 15 C 1.53039 * 109.52531 * 185.84203 * 14 13 3 16 16 C 1.53121 * 109.27282 * 300.81779 * 15 14 13 17 17 O 1.42901 * 109.52483 * 297.68732 * 16 15 14 18 18 C 1.53006 * 109.52017 * 177.55622 * 16 15 14 19 19 C 1.52996 * 109.46799 * 185.12270 * 18 16 15 20 20 C 1.53125 * 109.21259 * 57.62532 * 16 15 14 21 21 C 1.46848 * 110.99968 * 294.36955 * 13 3 2 22 22 H 1.09002 * 109.47148 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47051 * 299.99405 * 1 2 3 24 24 H 1.08997 * 109.47112 * 60.00339 * 1 2 3 25 25 H 1.09005 * 109.47228 * 239.99896 * 2 1 3 26 26 H 1.08997 * 109.47134 * 120.00218 * 2 1 3 27 27 H 0.97007 * 119.99689 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.46440 * 65.81670 * 14 13 3 29 29 H 1.09000 * 109.45974 * 305.85223 * 14 13 3 30 30 H 1.08998 * 109.50455 * 180.88023 * 15 14 13 31 31 H 1.08995 * 109.50387 * 60.75607 * 15 14 13 32 32 H 0.96697 * 113.99816 * 179.87696 * 17 16 15 33 33 H 1.08995 * 109.47477 * 305.12937 * 18 16 15 34 34 H 1.09004 * 109.46695 * 65.13375 * 18 16 15 35 35 H 1.09006 * 109.46983 * 179.97438 * 19 18 16 36 36 H 1.08995 * 109.47651 * 300.00560 * 19 18 16 37 37 H 1.08999 * 109.46969 * 60.00755 * 19 18 16 38 38 H 1.09001 * 109.50035 * 62.31673 * 20 16 15 39 39 H 1.09002 * 109.50182 * 182.43293 * 20 16 15 40 40 H 1.09008 * 109.46016 * 294.17507 * 21 13 3 41 41 H 1.08997 * 109.46505 * 54.14808 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6167 1.9775 0.8502 5 6 3.5434 1.4437 0.1036 6 1 4.1382 1.8920 -0.6785 7 6 4.1596 0.8725 1.1968 8 7 3.4353 0.3270 2.1494 9 14 6.0232 0.8735 1.3248 10 1 6.4705 2.1031 2.0273 11 1 6.4676 -0.3212 2.0866 12 1 6.6130 0.8396 -0.0376 13 7 1.6345 2.1052 -1.2467 14 6 1.8998 3.5483 -1.1860 15 6 1.3343 4.2254 -2.4365 16 6 1.9903 3.6188 -3.6800 17 8 3.3965 3.8710 -3.6493 18 6 1.3850 4.2488 -4.9362 19 6 1.9477 3.5532 -6.1773 20 6 1.7416 2.1079 -3.6947 21 6 2.2938 1.4925 -2.4070 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.8688 -0.0751 2.9183 28 1 2.9753 3.7180 -1.1358 29 1 1.4243 3.9679 -0.2994 30 1 1.5451 5.2941 -2.3985 31 1 0.2567 4.0677 -2.4800 32 1 3.8771 3.5122 -4.4079 33 1 0.3014 4.1332 -4.9146 34 1 1.6368 5.3089 -4.9683 35 1 1.5162 4.0017 -7.0722 36 1 3.0313 3.6689 -6.1988 37 1 1.6960 2.4932 -6.1451 38 1 0.6705 1.9161 -3.7586 39 1 2.2432 1.6650 -4.5552 40 1 3.3676 1.6719 -2.3512 41 1 2.1046 0.4191 -2.4074 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707254479.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:33 Heat of formation + Delta-G solvation = -84.675948 kcal Electronic energy + Delta-G solvation = -19074.202246 eV Core-core repulsion = 16373.423596 eV Total energy + Delta-G solvation = -2700.778650 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.75985 -38.17725 -35.15477 -33.88834 -33.28008 -31.64887 -30.86028 -28.19591 -25.82802 -24.40642 -24.07990 -22.04413 -21.03915 -20.56654 -18.43615 -17.31887 -17.08591 -16.37720 -15.89739 -15.44295 -15.21641 -15.10800 -14.84572 -14.66042 -13.84571 -13.57455 -13.45465 -13.19554 -13.03953 -12.90845 -12.77214 -12.51405 -12.47146 -12.32720 -12.19092 -11.94801 -11.76308 -11.65667 -11.53331 -11.29728 -11.07324 -10.82005 -10.47460 -10.36275 -8.86152 -8.02120 -6.24677 1.34216 1.35924 1.45316 2.39348 3.14610 3.34922 3.57467 3.85577 3.93663 4.00290 4.39827 4.42852 4.52944 4.62751 4.67366 4.72100 4.76278 4.77637 4.86654 4.92682 5.04752 5.06929 5.10383 5.14217 5.21235 5.28628 5.34220 5.34762 5.43262 5.46728 5.51603 5.57078 5.66916 5.81202 6.09858 6.24284 6.42686 6.74048 6.96397 6.98088 7.45696 8.91926 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025607 B = 0.007948 C = 0.006804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.176865 B = 3522.016514 C = 4114.266557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.218 3.782 4 H -0.001 1.001 5 C -0.547 4.547 6 H 0.045 0.955 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.944 3.056 10 H -0.280 1.280 11 H -0.279 1.279 12 H -0.274 1.274 13 N -0.525 5.525 14 C 0.068 3.932 15 C -0.095 4.095 16 C 0.133 3.867 17 O -0.576 6.576 18 C -0.139 4.139 19 C -0.156 4.156 20 C -0.131 4.131 21 C 0.068 3.932 22 H 0.046 0.954 23 H 0.031 0.969 24 H 0.059 0.941 25 H 0.031 0.969 26 H 0.060 0.940 27 H 0.261 0.739 28 H 0.009 0.991 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.380 0.620 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.013 0.987 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.720 4.779 -14.409 15.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.111 3.889 4 H 0.017 0.983 5 C -0.587 4.587 6 H 0.063 0.937 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.770 3.230 10 H -0.206 1.206 11 H -0.205 1.205 12 H -0.199 1.199 13 N -0.249 5.249 14 C -0.061 4.061 15 C -0.133 4.133 16 C 0.093 3.907 17 O -0.383 6.383 18 C -0.177 4.177 19 C -0.213 4.213 20 C -0.169 4.169 21 C -0.060 4.060 22 H 0.065 0.935 23 H 0.050 0.950 24 H 0.078 0.922 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.027 0.973 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.228 0.772 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.031 0.969 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.380 4.917 -13.735 15.549 hybrid contribution 2.280 -0.282 0.403 2.332 sum -3.101 4.635 -13.332 14.451 Atomic orbital electron populations 1.21558 0.96102 0.99812 1.00726 1.21419 0.94637 0.98000 1.00212 1.19045 0.91562 0.91639 0.86692 0.98285 1.21986 0.94261 1.37020 1.05394 0.93661 1.25595 1.01730 0.95064 0.95528 1.70000 1.36185 1.38958 1.09937 0.85778 0.81710 0.77536 0.77933 1.20615 1.20475 1.19915 1.62397 1.56783 1.02177 1.03530 1.21745 0.97420 0.89413 0.97509 1.21589 1.00260 0.99044 0.92384 1.21291 0.80802 0.93601 0.95016 1.86587 1.20173 1.81191 1.50394 1.22100 1.01412 1.00251 0.93925 1.21851 1.01177 1.01114 0.97184 1.22301 1.02452 0.95601 0.96567 1.21802 0.95674 0.97927 0.90608 0.93505 0.94964 0.92237 0.95023 0.92113 0.92959 0.97270 0.93365 0.91135 0.89206 0.77160 0.90202 0.91458 0.91373 0.92469 0.91928 0.90125 0.89858 0.96877 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.79 71.98 0.70 -4.33 16 2 C -0.10 -5.07 5.14 30.59 0.16 -4.91 16 3 C 0.22 11.25 1.71 44.17 0.08 11.32 16 4 H 0.00 -0.05 7.99 -2.38 -0.02 -0.06 16 5 C -0.55 -30.86 7.23 25.60 0.19 -30.67 16 6 H 0.05 2.63 5.84 -2.91 -0.02 2.61 16 7 C 0.02 1.15 5.29 84.66 0.45 1.60 16 8 N -0.91 -53.28 11.30 21.45 0.24 -53.03 16 9 Si 0.94 45.17 29.54 68.60 2.03 47.19 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 13 N -0.53 -22.60 4.02 -875.50 -3.52 -26.12 16 14 C 0.07 2.79 5.05 86.33 0.44 3.23 16 15 C -0.10 -2.93 5.11 30.65 0.16 -2.77 16 16 C 0.13 3.61 0.74 -10.71 -0.01 3.60 16 17 O -0.58 -17.60 11.84 -148.98 -1.76 -19.37 16 18 C -0.14 -2.74 5.24 30.60 0.16 -2.58 16 19 C -0.16 -2.47 9.22 71.98 0.66 -1.81 16 20 C -0.13 -3.72 4.51 30.65 0.14 -3.59 16 21 C 0.07 2.68 4.65 86.33 0.40 3.08 16 22 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.06 2.25 7.73 -2.39 -0.02 2.23 16 25 H 0.03 1.50 6.25 -2.38 -0.01 1.49 16 26 H 0.06 3.34 5.97 -2.39 -0.01 3.33 16 27 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 28 H 0.01 0.43 6.90 -2.39 -0.02 0.41 16 29 H 0.05 2.03 8.02 -2.39 -0.02 2.01 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.38 8.79 7.53 -74.06 -0.56 8.23 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.07 0.90 8.14 -2.38 -0.02 0.89 16 36 H 0.06 0.86 6.89 -2.39 -0.02 0.85 16 37 H 0.06 0.98 6.41 -2.39 -0.02 0.97 16 38 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.08 1.98 6.51 -2.39 -0.02 1.96 16 40 H 0.01 0.59 6.00 -2.38 -0.01 0.58 16 41 H 0.06 2.29 6.13 -2.39 -0.01 2.28 16 Total: -1.00 -63.33 303.31 0.94 -62.38 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.44 Total: 16.77 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 3.52 Total: -27.82 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -3.28 Total: -79.15 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -1.76 Total: -19.37 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -63.33 0.94 -62.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707254479.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.292 kcal (2) G-P(sol) polarization free energy of solvation -63.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds