Wall clock time and date at job start Sun Mar 29 2020 23:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46647 * 2 1 4 4 H 1.09002 * 109.47146 * 52.81278 * 3 2 1 5 5 C 1.50701 * 109.47321 * 292.81690 * 3 2 1 6 6 H 1.08004 * 119.99432 * 245.68066 * 5 3 2 7 7 C 1.37875 * 120.00284 * 65.94888 * 5 3 2 8 8 N 1.31509 * 119.99714 * 23.85718 * 7 5 3 9 9 Si 1.86797 * 120.00155 * 203.85317 * 7 5 3 10 10 H 1.48499 * 109.47092 * 60.00318 * 9 7 5 11 11 H 1.48494 * 109.47244 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.46906 * 300.00447 * 9 7 5 13 13 N 1.46897 * 109.46644 * 172.81421 * 3 2 1 14 14 C 1.47008 * 111.00452 * 59.68475 * 13 3 2 15 15 C 1.53093 * 109.26370 * 177.60641 * 14 13 3 16 16 O 1.43023 * 109.25702 * 56.84457 * 15 14 13 17 17 C 1.43016 * 113.73838 * 301.33126 * 16 15 14 18 18 H 1.08994 * 109.50998 * 298.69414 * 17 16 15 19 19 C 1.52998 * 109.50318 * 178.60227 * 17 16 15 20 20 C 1.53003 * 109.46898 * 60.00247 * 19 17 16 21 21 C 1.53004 * 109.46912 * 180.02562 * 19 17 16 22 22 C 1.47015 * 111.00021 * 296.04352 * 13 3 2 23 23 H 1.09000 * 109.47217 * 186.45973 * 1 2 3 24 24 H 1.08999 * 109.47775 * 306.46419 * 1 2 3 25 25 H 1.09006 * 109.47338 * 66.46851 * 1 2 3 26 26 H 1.08998 * 109.46968 * 240.00752 * 2 1 3 27 27 H 1.08996 * 109.46938 * 119.99856 * 2 1 3 28 28 H 0.97004 * 120.00117 * 179.97438 * 8 7 5 29 29 H 1.09003 * 109.50401 * 297.54330 * 14 13 3 30 30 H 1.09006 * 109.50706 * 57.66797 * 14 13 3 31 31 H 1.08997 * 109.50955 * 176.78024 * 15 14 13 32 32 H 1.09003 * 109.50451 * 296.87514 * 15 14 13 33 33 H 1.08994 * 109.47257 * 300.00442 * 19 17 16 34 34 H 1.09003 * 109.46833 * 60.00170 * 20 19 17 35 35 H 1.09005 * 109.46868 * 179.97438 * 20 19 17 36 36 H 1.08995 * 109.47030 * 299.99712 * 20 19 17 37 37 H 1.09002 * 109.46884 * 60.00842 * 21 19 17 38 38 H 1.08996 * 109.47181 * 179.97438 * 21 19 17 39 39 H 1.08994 * 109.47514 * 300.00278 * 21 19 17 40 40 H 1.09000 * 109.51176 * 302.33346 * 22 13 3 41 41 H 1.09003 * 109.50572 * 62.46469 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5754 1.9922 0.8187 5 6 1.6879 2.0999 -1.3096 6 1 2.4705 2.3993 -1.9910 7 6 0.3671 2.3239 -1.6355 8 7 -0.5377 2.4173 -0.6857 9 14 -0.1372 2.4948 -3.4259 10 1 0.2065 1.2494 -4.1580 11 1 -1.6013 2.7294 -3.5076 12 1 0.5823 3.6420 -4.0355 13 7 3.4986 1.4462 0.1732 14 6 4.1599 0.7060 -0.9112 15 6 5.6774 0.7855 -0.7248 16 8 6.0213 0.2761 0.5667 17 6 5.3953 0.9744 1.6464 18 1 5.7102 2.0178 1.6363 19 6 5.8007 0.3312 2.9741 20 6 7.3207 0.4043 3.1331 21 6 5.1301 1.0785 4.1286 22 6 3.8749 0.8968 1.4840 23 1 -0.3633 -1.0211 0.1156 24 1 -0.3634 0.6107 0.8264 25 1 -0.3634 0.4103 -0.9422 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 -1.4670 2.5753 -0.9148 29 1 3.8441 -0.3370 -0.8852 30 1 3.8876 1.1456 -1.8708 31 1 6.1702 0.1906 -1.4937 32 1 6.0001 1.8235 -0.8049 33 1 5.4841 -0.7117 2.9842 34 1 7.6372 1.4473 3.1230 35 1 7.6095 -0.0536 4.0792 36 1 7.7980 -0.1283 2.3106 37 1 4.0473 1.0259 4.0151 38 1 5.4185 0.6200 5.0744 39 1 5.4462 2.1215 4.1187 40 1 3.3946 1.4757 2.2728 41 1 3.5546 -0.1431 1.5482 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709000786.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:05 Heat of formation + Delta-G solvation = -43.985044 kcal Electronic energy + Delta-G solvation = -18908.019425 eV Core-core repulsion = 16209.005265 eV Total energy + Delta-G solvation = -2699.014160 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.40007 -36.40798 -35.02948 -33.08877 -30.54614 -29.71651 -27.73398 -26.86833 -25.20288 -23.42787 -22.53967 -21.06196 -19.88470 -18.84676 -16.34990 -16.08436 -15.73153 -14.54535 -14.46769 -14.25186 -13.86639 -13.65749 -13.48890 -13.35763 -12.80659 -12.56554 -12.20562 -12.04108 -11.43110 -11.35147 -11.06392 -10.96528 -10.84023 -10.74593 -10.62731 -10.56713 -10.45029 -10.17706 -9.91049 -9.69588 -9.62753 -9.19472 -8.92154 -7.87602 -7.17508 -6.12342 -3.97304 3.29764 3.35848 3.39672 4.09255 4.38768 4.77154 5.04855 5.13928 5.19841 5.30968 5.56256 5.59898 5.71808 5.72238 5.77617 5.85062 5.93666 6.00771 6.04081 6.09814 6.23247 6.30717 6.36429 6.38943 6.46176 6.53753 6.59553 6.65500 6.74120 7.04021 7.23033 7.32670 7.53344 7.64577 7.78936 7.92990 8.04331 8.22624 8.57596 8.98872 9.56036 10.95517 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035545 B = 0.006673 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.554391 B = 4195.153384 C = 4587.988130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.137 4.137 3 C 0.212 3.788 4 H 0.050 0.950 5 C -0.515 4.515 6 H 0.063 0.937 7 C 0.073 3.927 8 N -0.868 5.868 9 Si 0.875 3.125 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.528 5.528 14 C 0.025 3.975 15 C 0.063 3.937 16 O -0.389 6.389 17 C 0.100 3.900 18 H 0.060 0.940 19 C -0.088 4.088 20 C -0.140 4.140 21 C -0.147 4.147 22 C 0.021 3.979 23 H -0.001 1.001 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.040 0.960 27 H 0.020 0.980 28 H 0.261 0.739 29 H 0.033 0.967 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.892 -3.777 5.279 11.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.176 4.176 3 C 0.105 3.895 4 H 0.068 0.932 5 C -0.553 4.553 6 H 0.081 0.919 7 C -0.130 4.130 8 N -0.505 5.505 9 Si 0.702 3.298 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.251 5.251 14 C -0.104 4.104 15 C -0.014 4.014 16 O -0.308 6.308 17 C 0.042 3.958 18 H 0.078 0.922 19 C -0.107 4.107 20 C -0.198 4.198 21 C -0.205 4.205 22 C -0.107 4.107 23 H 0.018 0.982 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.059 0.941 27 H 0.038 0.962 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 9.976 -3.385 5.326 11.804 hybrid contribution -0.965 -0.606 -1.052 1.551 sum 9.010 -3.990 4.274 10.742 Atomic orbital electron populations 1.21901 0.95221 0.96026 1.04858 1.22254 0.97422 1.00475 0.97471 1.19453 0.80225 0.91147 0.98631 0.93196 1.20899 0.91712 1.40338 1.02375 0.91893 1.24764 0.96750 0.94681 0.96762 1.70230 1.02454 1.46147 1.31652 0.86936 0.77376 0.78704 0.86769 1.20227 1.21349 1.20216 1.62575 1.11806 1.51293 0.99454 1.22642 0.92943 0.96973 0.97837 1.22706 0.95502 0.98761 0.84393 1.87854 1.69738 1.58755 1.14461 1.22171 0.92008 0.95352 0.86277 0.92192 1.21077 0.96146 1.00340 0.93119 1.21741 0.95162 1.01627 1.01236 1.21856 1.01126 1.00355 0.97122 1.22776 0.94999 0.98571 0.94387 0.98199 0.92564 0.90412 0.94144 0.96168 0.92862 0.94931 0.89022 0.89562 0.93007 0.90879 0.93001 0.93184 0.92016 0.91954 0.92532 0.92449 0.90511 0.94756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.90 8.25 37.16 0.31 -2.59 16 2 C -0.14 -3.18 4.61 -26.73 -0.12 -3.30 16 3 C 0.21 5.20 1.97 -68.86 -0.14 5.06 16 4 H 0.05 1.37 7.96 -51.93 -0.41 0.96 16 5 C -0.52 -13.70 7.85 -34.44 -0.27 -13.97 16 6 H 0.06 1.69 6.60 -52.48 -0.35 1.34 16 7 C 0.07 1.95 3.51 -17.82 -0.06 1.89 16 8 N -0.87 -23.64 10.08 55.43 0.56 -23.08 16 9 Si 0.88 20.59 29.60 -169.99 -5.03 15.55 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.53 -11.35 4.72 -227.72 -1.07 -12.43 16 14 C 0.02 0.48 4.93 -3.72 -0.02 0.46 16 15 C 0.06 1.05 7.01 37.21 0.26 1.31 16 16 O -0.39 -6.66 9.80 -35.23 -0.35 -7.01 16 17 C 0.10 1.62 2.38 -26.68 -0.06 1.55 16 18 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 19 C -0.09 -1.17 2.72 -90.62 -0.25 -1.41 16 20 C -0.14 -1.64 9.05 37.16 0.34 -1.31 16 21 C -0.15 -1.73 8.85 37.16 0.33 -1.40 16 22 C 0.02 0.40 4.14 -3.71 -0.02 0.38 16 23 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 24 H 0.06 1.39 7.51 -51.93 -0.39 1.00 16 25 H 0.08 1.99 4.98 -51.93 -0.26 1.74 16 26 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 27 H 0.02 0.44 6.22 -51.93 -0.32 0.11 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.03 0.66 6.60 -51.93 -0.34 0.32 16 30 H 0.09 1.89 6.32 -51.93 -0.33 1.56 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.77 7.68 -51.93 -0.40 0.37 16 37 H 0.06 0.78 6.51 -51.93 -0.34 0.44 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 1.41 6.62 -51.93 -0.34 1.07 16 41 H 0.03 0.67 6.38 -51.93 -0.33 0.34 16 LS Contribution 302.63 15.07 4.56 4.56 Total: -1.00 -27.21 302.63 -8.15 -35.36 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.11 Total: 0.36 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 0.30 Total: -13.32 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: -0.52 Total: -35.51 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.35 Total: -7.01 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.21 -8.15 -35.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709000786.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.628 kcal (2) G-P(sol) polarization free energy of solvation -27.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds