Wall clock time and date at job start Sun Mar 29 2020 23:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46647 * 2 1 4 4 H 1.09002 * 109.47146 * 52.81278 * 3 2 1 5 5 C 1.50701 * 109.47321 * 292.81690 * 3 2 1 6 6 H 1.08004 * 119.99432 * 245.68066 * 5 3 2 7 7 C 1.37875 * 120.00284 * 65.94888 * 5 3 2 8 8 N 1.31509 * 119.99714 * 23.85718 * 7 5 3 9 9 Si 1.86797 * 120.00155 * 203.85317 * 7 5 3 10 10 H 1.48499 * 109.47092 * 60.00318 * 9 7 5 11 11 H 1.48494 * 109.47244 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.46906 * 300.00447 * 9 7 5 13 13 N 1.46897 * 109.46644 * 172.81421 * 3 2 1 14 14 C 1.47008 * 111.00452 * 59.68475 * 13 3 2 15 15 C 1.53093 * 109.26370 * 177.60641 * 14 13 3 16 16 O 1.43023 * 109.25702 * 56.84457 * 15 14 13 17 17 C 1.43016 * 113.73838 * 301.33126 * 16 15 14 18 18 H 1.08994 * 109.50998 * 298.69414 * 17 16 15 19 19 C 1.52998 * 109.50318 * 178.60227 * 17 16 15 20 20 C 1.53003 * 109.46898 * 60.00247 * 19 17 16 21 21 C 1.53004 * 109.46912 * 180.02562 * 19 17 16 22 22 C 1.47015 * 111.00021 * 296.04352 * 13 3 2 23 23 H 1.09000 * 109.47217 * 186.45973 * 1 2 3 24 24 H 1.08999 * 109.47775 * 306.46419 * 1 2 3 25 25 H 1.09006 * 109.47338 * 66.46851 * 1 2 3 26 26 H 1.08998 * 109.46968 * 240.00752 * 2 1 3 27 27 H 1.08996 * 109.46938 * 119.99856 * 2 1 3 28 28 H 0.97004 * 120.00117 * 179.97438 * 8 7 5 29 29 H 1.09003 * 109.50401 * 297.54330 * 14 13 3 30 30 H 1.09006 * 109.50706 * 57.66797 * 14 13 3 31 31 H 1.08997 * 109.50955 * 176.78024 * 15 14 13 32 32 H 1.09003 * 109.50451 * 296.87514 * 15 14 13 33 33 H 1.08994 * 109.47257 * 300.00442 * 19 17 16 34 34 H 1.09003 * 109.46833 * 60.00170 * 20 19 17 35 35 H 1.09005 * 109.46868 * 179.97438 * 20 19 17 36 36 H 1.08995 * 109.47030 * 299.99712 * 20 19 17 37 37 H 1.09002 * 109.46884 * 60.00842 * 21 19 17 38 38 H 1.08996 * 109.47181 * 179.97438 * 21 19 17 39 39 H 1.08994 * 109.47514 * 300.00278 * 21 19 17 40 40 H 1.09000 * 109.51176 * 302.33346 * 22 13 3 41 41 H 1.09003 * 109.50572 * 62.46469 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5754 1.9922 0.8187 5 6 1.6879 2.0999 -1.3096 6 1 2.4705 2.3993 -1.9910 7 6 0.3671 2.3239 -1.6355 8 7 -0.5377 2.4173 -0.6857 9 14 -0.1372 2.4948 -3.4259 10 1 0.2065 1.2494 -4.1580 11 1 -1.6013 2.7294 -3.5076 12 1 0.5823 3.6420 -4.0355 13 7 3.4986 1.4462 0.1732 14 6 4.1599 0.7060 -0.9112 15 6 5.6774 0.7855 -0.7248 16 8 6.0213 0.2761 0.5667 17 6 5.3953 0.9744 1.6464 18 1 5.7102 2.0178 1.6363 19 6 5.8007 0.3312 2.9741 20 6 7.3207 0.4043 3.1331 21 6 5.1301 1.0785 4.1286 22 6 3.8749 0.8968 1.4840 23 1 -0.3633 -1.0211 0.1156 24 1 -0.3634 0.6107 0.8264 25 1 -0.3634 0.4103 -0.9422 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 -1.4670 2.5753 -0.9148 29 1 3.8441 -0.3370 -0.8852 30 1 3.8876 1.1456 -1.8708 31 1 6.1702 0.1906 -1.4937 32 1 6.0001 1.8235 -0.8049 33 1 5.4841 -0.7117 2.9842 34 1 7.6372 1.4473 3.1230 35 1 7.6095 -0.0536 4.0792 36 1 7.7980 -0.1283 2.3106 37 1 4.0473 1.0259 4.0151 38 1 5.4185 0.6200 5.0744 39 1 5.4462 2.1215 4.1187 40 1 3.3946 1.4757 2.2728 41 1 3.5546 -0.1431 1.5482 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709000786.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:04 Heat of formation + Delta-G solvation = -60.424023 kcal Electronic energy + Delta-G solvation = -18908.732273 eV Core-core repulsion = 16209.005265 eV Total energy + Delta-G solvation = -2699.727008 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.86495 -38.06422 -36.21240 -34.94378 -32.46387 -31.08892 -29.42508 -27.98730 -26.85138 -24.86408 -24.38121 -22.71196 -21.05622 -20.57262 -18.27820 -17.49736 -17.23892 -16.33792 -15.99979 -15.61455 -15.39675 -15.32531 -15.17541 -14.69657 -14.17914 -14.11938 -13.53281 -13.24143 -12.96160 -12.84815 -12.74487 -12.66288 -12.49244 -12.38769 -12.16651 -11.93871 -11.83054 -11.73917 -11.62101 -11.55878 -11.14751 -11.06519 -10.42154 -9.91894 -8.89802 -8.16756 -6.07427 1.41375 1.45005 1.51103 2.43353 2.81644 3.10093 3.24738 3.85006 4.01516 4.14505 4.18331 4.30863 4.34978 4.44242 4.46948 4.52265 4.59028 4.69845 4.74423 4.79175 4.85653 4.92866 5.00801 5.03092 5.06304 5.10518 5.16781 5.24917 5.31501 5.39667 5.45008 5.50167 5.67009 5.76936 5.92284 6.12357 6.27825 6.41185 6.70979 6.93062 7.48791 8.90702 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035545 B = 0.006673 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.554391 B = 4195.153384 C = 4587.988130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.127 4.127 3 C 0.219 3.781 4 H 0.012 0.988 5 C -0.533 4.533 6 H 0.055 0.945 7 C 0.037 3.963 8 N -0.889 5.889 9 Si 0.932 3.068 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.541 5.541 14 C 0.027 3.973 15 C 0.069 3.931 16 O -0.392 6.392 17 C 0.104 3.896 18 H 0.057 0.943 19 C -0.085 4.085 20 C -0.135 4.135 21 C -0.145 4.145 22 C 0.025 3.975 23 H 0.023 0.977 24 H 0.038 0.962 25 H 0.058 0.942 26 H 0.038 0.962 27 H 0.031 0.969 28 H 0.262 0.738 29 H 0.024 0.976 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.162 -4.423 5.338 13.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.167 4.167 3 C 0.112 3.888 4 H 0.030 0.970 5 C -0.571 4.571 6 H 0.074 0.926 7 C -0.164 4.164 8 N -0.527 5.527 9 Si 0.758 3.242 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.200 1.200 13 N -0.265 5.265 14 C -0.101 4.101 15 C -0.008 4.008 16 O -0.311 6.311 17 C 0.046 3.954 18 H 0.075 0.925 19 C -0.104 4.104 20 C -0.192 4.192 21 C -0.202 4.202 22 C -0.104 4.104 23 H 0.042 0.958 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.096 0.904 31 H 0.134 0.866 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 11.260 -4.033 5.387 13.118 hybrid contribution -1.364 -0.384 -1.037 1.756 sum 9.896 -4.417 4.350 11.678 Atomic orbital electron populations 1.21745 0.95469 0.96897 1.03036 1.22109 0.97062 0.99735 0.97778 1.19179 0.82124 0.91185 0.96344 0.96977 1.21111 0.91866 1.40943 1.03178 0.92642 1.25367 0.96703 0.94410 0.99962 1.70322 1.02590 1.46640 1.33150 0.86032 0.77005 0.78656 0.82493 1.19804 1.21020 1.20020 1.62480 1.10144 1.52542 1.01318 1.22646 0.95060 0.95864 0.96566 1.22741 0.93179 0.99733 0.85106 1.87868 1.69528 1.58983 1.14688 1.22239 0.89909 0.95660 0.87599 0.92487 1.21096 0.97595 0.99919 0.91767 1.21698 0.93468 1.02044 1.02019 1.21846 1.00162 1.00650 0.97539 1.22820 0.97055 0.97664 0.92832 0.95842 0.94258 0.92315 0.94363 0.95026 0.92832 0.95766 0.90407 0.86609 0.92689 0.91276 0.92572 0.91110 0.92869 0.93226 0.90318 0.92084 0.90793 0.95576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.40 8.25 71.98 0.59 -4.81 16 2 C -0.13 -5.94 4.61 30.60 0.14 -5.80 16 3 C 0.22 10.97 1.97 44.17 0.09 11.06 16 4 H 0.01 0.70 7.96 -2.39 -0.02 0.68 16 5 C -0.53 -28.76 7.85 25.60 0.20 -28.56 16 6 H 0.06 3.02 6.60 -2.91 -0.02 3.00 16 7 C 0.04 1.97 3.51 84.65 0.30 2.27 16 8 N -0.89 -49.16 10.08 21.45 0.22 -48.95 16 9 Si 0.93 42.36 29.60 68.60 2.03 44.39 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 13 N -0.54 -23.49 4.72 -874.36 -4.12 -27.62 16 14 C 0.03 1.05 4.93 86.31 0.43 1.48 16 15 C 0.07 2.18 7.01 72.01 0.50 2.68 16 16 O -0.39 -12.71 9.80 -148.98 -1.46 -14.17 16 17 C 0.10 3.24 2.38 30.63 0.07 3.31 16 18 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 19 C -0.08 -2.09 2.72 -10.79 -0.03 -2.12 16 20 C -0.14 -2.80 9.05 71.98 0.65 -2.15 16 21 C -0.14 -3.13 8.85 71.98 0.64 -2.50 16 22 C 0.02 0.92 4.14 86.32 0.36 1.28 16 23 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.04 1.96 7.51 -2.39 -0.02 1.95 16 25 H 0.06 3.02 4.98 -2.38 -0.01 3.01 16 26 H 0.04 1.78 6.85 -2.39 -0.02 1.76 16 27 H 0.03 1.38 6.22 -2.39 -0.01 1.36 16 28 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 29 H 0.02 0.97 6.60 -2.39 -0.02 0.96 16 30 H 0.08 3.22 6.32 -2.38 -0.02 3.21 16 31 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.05 1.20 7.68 -2.39 -0.02 1.18 16 37 H 0.05 1.19 6.51 -2.39 -0.02 1.18 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 2.76 6.62 -2.39 -0.02 2.74 16 41 H 0.03 1.01 6.38 -2.39 -0.02 1.00 16 Total: -1.00 -57.74 302.63 1.58 -56.16 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.98 Total: 14.04 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 3.94 Total: -23.85 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: -3.91 Total: -76.56 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -1.46 Total: -14.17 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -57.74 1.58 -56.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709000786.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.267 kcal (2) G-P(sol) polarization free energy of solvation -57.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds