Wall clock time and date at job start Sun Mar 29 2020 23:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46909 * 2 1 4 4 H 1.09012 * 109.46933 * 178.28934 * 3 2 1 5 5 C 1.50697 * 109.47080 * 298.28508 * 3 2 1 6 6 H 1.08006 * 119.99906 * 120.00735 * 5 3 2 7 7 C 1.37874 * 120.00239 * 300.00223 * 5 3 2 8 8 N 1.31516 * 120.00050 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 120.00094 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.46855 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.46900 * 120.00109 * 9 7 5 12 12 H 1.48495 * 109.47333 * 240.00265 * 9 7 5 13 13 N 1.46898 * 109.47540 * 58.29328 * 3 2 1 14 14 C 1.47015 * 111.00252 * 58.30180 * 13 3 2 15 15 C 1.53095 * 109.25750 * 182.39881 * 14 13 3 16 16 O 1.43017 * 109.25821 * 303.14937 * 15 14 13 17 17 C 1.43022 * 113.73649 * 58.67237 * 16 15 14 18 18 H 1.08991 * 109.50740 * 61.31066 * 17 16 15 19 19 C 1.53006 * 109.50455 * 181.39854 * 17 16 15 20 20 C 1.53001 * 109.46828 * 299.99934 * 19 17 16 21 21 C 1.52995 * 109.47458 * 59.99615 * 19 17 16 22 22 C 1.47012 * 111.00160 * 181.93961 * 13 3 2 23 23 H 1.09001 * 109.47520 * 305.24130 * 1 2 3 24 24 H 1.08998 * 109.47384 * 65.23879 * 1 2 3 25 25 H 1.09000 * 109.47203 * 185.23971 * 1 2 3 26 26 H 1.08993 * 109.47343 * 239.99776 * 2 1 3 27 27 H 1.09004 * 109.46898 * 119.99373 * 2 1 3 28 28 H 0.97001 * 119.99678 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.50246 * 302.32664 * 14 13 3 30 30 H 1.08993 * 109.50711 * 62.41483 * 14 13 3 31 31 H 1.09002 * 109.50698 * 183.21481 * 15 14 13 32 32 H 1.09004 * 109.51026 * 63.08323 * 15 14 13 33 33 H 1.08994 * 109.47062 * 180.02562 * 19 17 16 34 34 H 1.08995 * 109.47522 * 60.00076 * 20 19 17 35 35 H 1.08999 * 109.46863 * 180.02562 * 20 19 17 36 36 H 1.09007 * 109.47157 * 299.99746 * 20 19 17 37 37 H 1.09011 * 109.46731 * 60.00123 * 21 19 17 38 38 H 1.08999 * 109.47109 * 179.97438 * 21 19 17 39 39 H 1.09003 * 109.47524 * 300.00449 * 21 19 17 40 40 H 1.09006 * 109.50950 * 57.67217 * 22 13 3 41 41 H 1.08998 * 109.50672 * 297.53953 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1296 1.4427 0.0307 5 6 1.5726 2.1405 -1.2511 6 1 0.9493 3.0195 -1.1784 7 6 1.9407 1.6570 -2.4887 8 7 2.6994 0.5864 -2.5774 9 14 1.3608 2.5219 -4.0397 10 1 0.5249 3.6926 -3.6705 11 1 2.5378 2.9810 -4.8199 12 1 0.5590 1.5800 -4.8613 13 7 1.5169 2.1469 1.1782 14 6 1.9202 1.4695 2.4191 15 6 1.3057 2.2002 3.6159 16 8 1.7120 3.5712 3.5909 17 6 1.3349 4.2617 2.3965 18 1 0.2488 4.2637 2.3048 19 6 1.8453 5.7028 2.4567 20 6 1.2347 6.4098 3.6685 21 6 3.3700 5.6991 2.5833 22 6 1.9497 3.5518 1.1874 23 1 -0.3634 0.5930 0.8393 24 1 -0.3634 0.4304 -0.9331 25 1 -0.3633 -1.0234 0.0938 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.9581 0.2461 -3.4482 29 1 1.5673 0.4383 2.4021 30 1 3.0068 1.4810 2.5035 31 1 1.6481 1.7360 4.5408 32 1 0.2187 2.1417 3.5593 33 1 1.5572 6.2286 1.5465 34 1 1.5224 5.8842 4.5789 35 1 1.5979 7.4366 3.7111 36 1 0.1484 6.4126 3.5783 37 1 3.8050 5.1954 1.7200 38 1 3.7335 6.7258 2.6258 39 1 3.6577 5.1734 3.4938 40 1 1.6184 4.0407 0.2711 41 1 3.0367 3.5974 1.2524 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709000787.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:07 Heat of formation + Delta-G solvation = -55.002393 kcal Electronic energy + Delta-G solvation = -19004.715471 eV Core-core repulsion = 16305.223563 eV Total energy + Delta-G solvation = -2699.491908 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.35150 -36.27279 -34.78802 -32.74487 -30.95785 -29.69122 -27.33967 -26.84402 -25.30348 -23.73622 -22.64686 -20.90655 -19.30727 -18.88792 -16.18686 -15.95559 -15.72684 -14.71314 -14.54878 -14.40565 -13.99559 -13.70415 -13.26625 -12.91511 -12.69491 -12.49134 -11.97908 -11.87364 -11.73200 -11.38516 -11.08246 -10.94389 -10.91807 -10.69923 -10.49949 -10.43468 -10.35579 -10.08955 -9.86740 -9.72571 -9.47822 -8.89429 -8.77965 -8.41658 -7.17677 -6.02282 -4.06073 3.27749 3.36197 3.39763 4.17250 4.38713 4.79920 5.16153 5.20158 5.28078 5.29950 5.58968 5.69568 5.72260 5.77065 5.83882 5.92021 6.00571 6.10769 6.15123 6.18584 6.25034 6.38566 6.43811 6.47893 6.54750 6.60048 6.67459 6.74571 6.77890 7.10673 7.28976 7.38731 7.60755 7.65550 7.72601 7.81597 8.14118 8.31569 8.56783 8.99088 9.58101 11.04234 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024183 B = 0.008048 C = 0.006646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.574573 B = 3478.224873 C = 4212.268690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 C 0.217 3.783 4 H -0.003 1.003 5 C -0.496 4.496 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.528 5.528 14 C 0.015 3.985 15 C 0.068 3.932 16 O -0.386 6.386 17 C 0.097 3.903 18 H 0.059 0.941 19 C -0.087 4.087 20 C -0.140 4.140 21 C -0.145 4.145 22 C 0.035 3.965 23 H 0.045 0.955 24 H 0.054 0.946 25 H 0.015 0.985 26 H 0.092 0.908 27 H 0.013 0.987 28 H 0.259 0.741 29 H 0.081 0.919 30 H 0.027 0.973 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.875 5.778 9.795 11.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.150 4.150 3 C 0.111 3.889 4 H 0.014 0.986 5 C -0.535 4.535 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.210 1.210 13 N -0.253 5.253 14 C -0.114 4.114 15 C -0.009 4.009 16 O -0.305 6.305 17 C 0.039 3.961 18 H 0.077 0.923 19 C -0.106 4.106 20 C -0.198 4.198 21 C -0.202 4.202 22 C -0.094 4.094 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.034 0.966 26 H 0.111 0.889 27 H 0.032 0.968 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.045 0.955 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.200 5.736 9.768 11.540 hybrid contribution 0.514 0.115 -1.157 1.271 sum -1.686 5.851 8.611 10.546 Atomic orbital electron populations 1.21461 0.97285 0.97274 1.01813 1.21573 0.95159 0.98151 1.00114 1.19272 0.92512 0.90850 0.86265 0.98566 1.21086 1.30914 1.11870 0.89620 0.91980 1.24903 0.95195 0.95086 0.98943 1.69887 1.36522 1.22626 1.24122 0.86526 0.78450 0.79669 0.83309 1.19741 1.21195 1.21039 1.62330 1.59741 1.01158 1.02098 1.22731 0.97670 0.99312 0.91688 1.22588 0.98673 0.82003 0.97681 1.87858 1.80305 1.22862 1.39453 1.22237 0.98053 0.91020 0.84781 0.92321 1.21122 0.96443 0.93966 0.99069 1.21745 1.00114 0.99376 0.98538 1.21816 0.94935 1.00807 1.02626 1.22663 0.97602 0.90934 0.98163 0.93550 0.92703 0.96605 0.88937 0.96835 0.93055 0.90076 0.95480 0.89707 0.93059 0.90219 0.92047 0.93242 0.93129 0.92234 0.93423 0.92162 0.89142 0.94932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.50 37.16 0.35 -2.29 16 2 C -0.11 -2.65 5.03 -26.73 -0.13 -2.78 16 3 C 0.22 5.36 1.75 -68.87 -0.12 5.24 16 4 H 0.00 -0.09 8.14 -51.92 -0.42 -0.51 16 5 C -0.50 -13.15 6.82 -34.44 -0.23 -13.39 16 6 H 0.06 1.66 6.55 -52.48 -0.34 1.31 16 7 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -25.06 11.31 55.43 0.63 -24.44 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 N -0.53 -11.19 3.66 -227.72 -0.83 -12.02 16 14 C 0.01 0.27 5.30 -3.71 -0.02 0.26 16 15 C 0.07 1.07 7.01 37.21 0.26 1.33 16 16 O -0.39 -6.45 9.13 -35.23 -0.32 -6.78 16 17 C 0.10 1.61 2.54 -26.68 -0.07 1.54 16 18 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 19 C -0.09 -1.22 2.82 -90.62 -0.26 -1.48 16 20 C -0.14 -1.71 9.05 37.16 0.34 -1.37 16 21 C -0.14 -2.00 8.70 37.15 0.32 -1.68 16 22 C 0.03 0.68 4.39 -3.71 -0.02 0.67 16 23 H 0.05 0.97 7.39 -51.93 -0.38 0.59 16 24 H 0.05 1.29 7.46 -51.93 -0.39 0.90 16 25 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 2.46 6.02 -51.93 -0.31 2.15 16 27 H 0.01 0.29 6.42 -51.93 -0.33 -0.04 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.08 1.48 6.19 -51.93 -0.32 1.16 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.79 7.68 -51.93 -0.40 0.39 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 37 H 0.06 0.90 6.36 -51.92 -0.33 0.57 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.87 7.68 -51.93 -0.40 0.47 16 40 H 0.09 1.90 6.28 -51.93 -0.33 1.58 16 41 H 0.03 0.67 6.27 -51.93 -0.33 0.35 16 LS Contribution 307.17 15.07 4.63 4.63 Total: -1.00 -27.57 307.17 -7.81 -35.38 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -7.22 Total: -0.38 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 0.33 Total: -12.43 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: -0.21 Total: -36.45 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.32 Total: -6.78 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.57 -7.81 -35.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709000787.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.620 kcal (2) G-P(sol) polarization free energy of solvation -27.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds