Wall clock time and date at job start Sun Mar 29 2020 23:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46909 * 2 1 4 4 H 1.09012 * 109.46933 * 178.28934 * 3 2 1 5 5 C 1.50697 * 109.47080 * 298.28508 * 3 2 1 6 6 H 1.08006 * 119.99906 * 120.00735 * 5 3 2 7 7 C 1.37874 * 120.00239 * 300.00223 * 5 3 2 8 8 N 1.31516 * 120.00050 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 120.00094 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.46855 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.46900 * 120.00109 * 9 7 5 12 12 H 1.48495 * 109.47333 * 240.00265 * 9 7 5 13 13 N 1.46898 * 109.47540 * 58.29328 * 3 2 1 14 14 C 1.47015 * 111.00252 * 58.30180 * 13 3 2 15 15 C 1.53095 * 109.25750 * 182.39881 * 14 13 3 16 16 O 1.43017 * 109.25821 * 303.14937 * 15 14 13 17 17 C 1.43022 * 113.73649 * 58.67237 * 16 15 14 18 18 H 1.08991 * 109.50740 * 61.31066 * 17 16 15 19 19 C 1.53006 * 109.50455 * 181.39854 * 17 16 15 20 20 C 1.53001 * 109.46828 * 299.99934 * 19 17 16 21 21 C 1.52995 * 109.47458 * 59.99615 * 19 17 16 22 22 C 1.47012 * 111.00160 * 181.93961 * 13 3 2 23 23 H 1.09001 * 109.47520 * 305.24130 * 1 2 3 24 24 H 1.08998 * 109.47384 * 65.23879 * 1 2 3 25 25 H 1.09000 * 109.47203 * 185.23971 * 1 2 3 26 26 H 1.08993 * 109.47343 * 239.99776 * 2 1 3 27 27 H 1.09004 * 109.46898 * 119.99373 * 2 1 3 28 28 H 0.97001 * 119.99678 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.50246 * 302.32664 * 14 13 3 30 30 H 1.08993 * 109.50711 * 62.41483 * 14 13 3 31 31 H 1.09002 * 109.50698 * 183.21481 * 15 14 13 32 32 H 1.09004 * 109.51026 * 63.08323 * 15 14 13 33 33 H 1.08994 * 109.47062 * 180.02562 * 19 17 16 34 34 H 1.08995 * 109.47522 * 60.00076 * 20 19 17 35 35 H 1.08999 * 109.46863 * 180.02562 * 20 19 17 36 36 H 1.09007 * 109.47157 * 299.99746 * 20 19 17 37 37 H 1.09011 * 109.46731 * 60.00123 * 21 19 17 38 38 H 1.08999 * 109.47109 * 179.97438 * 21 19 17 39 39 H 1.09003 * 109.47524 * 300.00449 * 21 19 17 40 40 H 1.09006 * 109.50950 * 57.67217 * 22 13 3 41 41 H 1.08998 * 109.50672 * 297.53953 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1296 1.4427 0.0307 5 6 1.5726 2.1405 -1.2511 6 1 0.9493 3.0195 -1.1784 7 6 1.9407 1.6570 -2.4887 8 7 2.6994 0.5864 -2.5774 9 14 1.3608 2.5219 -4.0397 10 1 0.5249 3.6926 -3.6705 11 1 2.5378 2.9810 -4.8199 12 1 0.5590 1.5800 -4.8613 13 7 1.5169 2.1469 1.1782 14 6 1.9202 1.4695 2.4191 15 6 1.3057 2.2002 3.6159 16 8 1.7120 3.5712 3.5909 17 6 1.3349 4.2617 2.3965 18 1 0.2488 4.2637 2.3048 19 6 1.8453 5.7028 2.4567 20 6 1.2347 6.4098 3.6685 21 6 3.3700 5.6991 2.5833 22 6 1.9497 3.5518 1.1874 23 1 -0.3634 0.5930 0.8393 24 1 -0.3634 0.4304 -0.9331 25 1 -0.3633 -1.0234 0.0938 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.9581 0.2461 -3.4482 29 1 1.5673 0.4383 2.4021 30 1 3.0068 1.4810 2.5035 31 1 1.6481 1.7360 4.5408 32 1 0.2187 2.1417 3.5593 33 1 1.5572 6.2286 1.5465 34 1 1.5224 5.8842 4.5789 35 1 1.5979 7.4366 3.7111 36 1 0.1484 6.4126 3.5783 37 1 3.8050 5.1954 1.7200 38 1 3.7335 6.7258 2.6258 39 1 3.6577 5.1734 3.4938 40 1 1.6184 4.0407 0.2711 41 1 3.0367 3.5974 1.2524 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709000787.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:06 Heat of formation + Delta-G solvation = -71.080659 kcal Electronic energy + Delta-G solvation = -19005.412677 eV Core-core repulsion = 16305.223563 eV Total energy + Delta-G solvation = -2700.189114 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.80826 -37.94197 -36.02861 -34.63010 -32.83034 -31.11288 -29.00093 -28.00703 -27.06598 -25.30517 -24.34328 -22.39564 -20.70324 -20.60066 -18.19444 -17.49349 -17.17747 -16.32616 -16.05497 -15.97903 -15.62541 -15.03215 -14.83863 -14.52685 -14.19529 -13.92021 -13.68009 -13.38143 -12.93634 -12.87540 -12.74202 -12.65683 -12.49826 -12.34191 -12.09217 -11.89307 -11.77243 -11.65779 -11.56064 -11.40061 -11.08568 -10.76449 -10.48832 -10.33853 -8.96193 -8.10359 -6.20619 1.39081 1.41761 1.52383 2.41161 2.88527 3.15562 3.26174 3.91068 3.97974 4.17214 4.21389 4.28809 4.31401 4.44363 4.57859 4.66083 4.70879 4.75945 4.82202 4.85049 4.89098 4.93330 4.99771 5.03683 5.10650 5.14374 5.25042 5.26130 5.40364 5.47368 5.48125 5.55096 5.70439 5.74931 5.85292 6.26340 6.30949 6.35871 6.69086 6.91560 7.47239 8.95604 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024183 B = 0.008048 C = 0.006646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.574573 B = 3478.224873 C = 4212.268690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.108 4.108 3 C 0.223 3.777 4 H -0.049 1.049 5 C -0.503 4.503 6 H 0.057 0.943 7 C 0.013 3.987 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.281 1.281 13 N -0.530 5.530 14 C 0.014 3.986 15 C 0.072 3.928 16 O -0.387 6.387 17 C 0.105 3.895 18 H 0.060 0.940 19 C -0.088 4.088 20 C -0.133 4.133 21 C -0.140 4.140 22 C 0.038 3.962 23 H 0.055 0.945 24 H 0.032 0.968 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.028 0.972 28 H 0.260 0.740 29 H 0.086 0.914 30 H 0.012 0.988 31 H 0.117 0.883 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.125 6.823 10.999 13.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.146 4.146 3 C 0.116 3.884 4 H -0.032 1.032 5 C -0.542 4.542 6 H 0.075 0.925 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.190 1.190 11 H -0.210 1.210 12 H -0.207 1.207 13 N -0.255 5.255 14 C -0.115 4.115 15 C -0.005 4.005 16 O -0.306 6.306 17 C 0.047 3.953 18 H 0.078 0.922 19 C -0.107 4.107 20 C -0.190 4.190 21 C -0.198 4.198 22 C -0.091 4.091 23 H 0.074 0.926 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.030 0.970 31 H 0.135 0.865 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -3.457 6.790 10.993 13.375 hybrid contribution 0.952 -0.235 -1.500 1.792 sum -2.506 6.555 9.492 11.805 Atomic orbital electron populations 1.21314 0.95451 0.98808 1.00922 1.21445 0.96642 0.97172 0.99349 1.19060 0.89797 0.91993 0.87545 1.03174 1.21275 1.30566 1.11710 0.90615 0.92484 1.25631 0.95353 0.95714 1.01801 1.70022 1.37519 1.23826 1.24690 0.85582 0.77999 0.78814 0.79747 1.19008 1.21021 1.20668 1.62302 1.59284 1.01803 1.02065 1.22844 0.97082 0.99936 0.91626 1.22704 0.99052 0.81292 0.97457 1.87873 1.80419 1.23292 1.39047 1.22197 0.97772 0.92092 0.83213 0.92233 1.21178 0.96499 0.92432 1.00545 1.21680 1.00401 1.00041 0.96901 1.21768 0.94901 1.01852 1.01232 1.22655 0.96810 0.90376 0.99218 0.92618 0.94929 0.94144 0.91960 0.95304 0.93090 0.89594 0.96952 0.86493 0.92130 0.89635 0.92625 0.91315 0.92487 0.94357 0.91156 0.92840 0.91001 0.96573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.60 9.50 71.98 0.68 -3.92 16 2 C -0.11 -5.17 5.03 30.59 0.15 -5.01 16 3 C 0.22 11.35 1.75 44.17 0.08 11.43 16 4 H -0.05 -2.89 8.14 -2.38 -0.02 -2.91 16 5 C -0.50 -27.27 6.82 25.60 0.17 -27.10 16 6 H 0.06 3.09 6.55 -2.91 -0.02 3.07 16 7 C 0.01 0.74 5.30 84.65 0.45 1.18 16 8 N -0.92 -53.06 11.31 21.45 0.24 -52.82 16 9 Si 0.95 43.60 29.54 68.60 2.03 45.62 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 13 N -0.53 -22.59 3.66 -874.38 -3.20 -25.79 16 14 C 0.01 0.50 5.30 86.31 0.46 0.95 16 15 C 0.07 2.09 7.01 72.01 0.50 2.59 16 16 O -0.39 -12.21 9.13 -148.98 -1.36 -13.57 16 17 C 0.11 3.37 2.54 30.63 0.08 3.44 16 18 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 19 C -0.09 -2.31 2.82 -10.79 -0.03 -2.34 16 20 C -0.13 -2.85 9.05 71.98 0.65 -2.20 16 21 C -0.14 -3.73 8.70 71.98 0.63 -3.10 16 22 C 0.04 1.51 4.39 86.31 0.38 1.89 16 23 H 0.05 2.25 7.39 -2.39 -0.02 2.23 16 24 H 0.03 1.51 7.46 -2.39 -0.02 1.49 16 25 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.06 3.39 6.02 -2.39 -0.01 3.38 16 27 H 0.03 1.26 6.42 -2.38 -0.02 1.24 16 28 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.09 3.02 6.19 -2.39 -0.01 3.00 16 30 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.05 1.27 7.68 -2.39 -0.02 1.25 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.04 1.16 6.36 -2.38 -0.02 1.14 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.05 1.48 7.68 -2.39 -0.02 1.46 16 40 H 0.07 3.10 6.28 -2.38 -0.01 3.09 16 41 H 0.02 0.69 6.27 -2.39 -0.01 0.68 16 Total: -1.00 -59.98 307.17 2.89 -57.09 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.98 Total: 11.64 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: 4.20 Total: -22.18 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -2.95 Total: -78.61 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -1.36 Total: -13.57 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -59.98 2.89 -57.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709000787.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.995 kcal (2) G-P(sol) polarization free energy of solvation -59.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds