Wall clock time and date at job start Sun Mar 29 2020 22:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47259 * 2 1 4 4 C 1.52997 * 109.47583 * 120.00220 * 2 1 3 5 5 N 1.46904 * 109.47425 * 66.42502 * 4 2 1 6 6 C 1.46892 * 111.00319 * 199.82056 * 5 4 2 7 7 C 1.50709 * 109.46616 * 66.05066 * 6 5 4 8 8 H 1.07995 * 120.00218 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99656 * 179.97438 * 7 6 5 10 10 N 1.31521 * 120.00294 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99932 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47001 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47625 * 119.99710 * 11 9 7 14 14 H 1.48506 * 109.47121 * 239.99736 * 11 9 7 15 15 C 1.46903 * 110.99484 * 75.87126 * 5 4 2 16 16 C 1.52994 * 109.47061 * 198.18983 * 15 5 4 17 17 O 1.42907 * 109.47339 * 64.13165 * 16 15 5 18 18 C 1.42895 * 113.99837 * 184.82380 * 17 16 15 19 19 C 1.53005 * 117.49677 * 223.69718 * 18 17 16 20 20 C 1.53004 * 117.49589 * 155.07721 * 18 17 16 21 21 H 1.09000 * 109.47269 * 299.99822 * 1 2 3 22 22 H 1.09002 * 109.47352 * 60.00274 * 1 2 3 23 23 H 1.09007 * 109.46866 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47269 * 240.00178 * 2 1 3 25 25 H 1.08994 * 109.47546 * 184.80547 * 3 2 1 26 26 H 1.09008 * 109.46885 * 304.80288 * 3 2 1 27 27 H 1.09003 * 109.46652 * 64.79831 * 3 2 1 28 28 H 1.09007 * 109.46954 * 306.42906 * 4 2 1 29 29 H 1.09003 * 109.47543 * 186.43313 * 4 2 1 30 30 H 1.09003 * 109.47153 * 186.04625 * 6 5 4 31 31 H 1.09001 * 109.47643 * 306.05442 * 6 5 4 32 32 H 0.96998 * 119.99759 * 180.02562 * 10 9 7 33 33 H 1.09004 * 109.47364 * 318.19027 * 15 5 4 34 34 H 1.08997 * 109.47002 * 78.18690 * 15 5 4 35 35 H 1.09001 * 109.47436 * 184.12884 * 16 15 5 36 36 H 1.09004 * 109.47151 * 304.13288 * 16 15 5 37 37 H 1.08999 * 115.55425 * 9.40388 * 18 17 16 38 38 H 1.09001 * 117.49465 * 359.97438 * 19 18 17 39 39 H 1.08999 * 117.49634 * 145.02231 * 19 18 17 40 40 H 1.08996 * 117.49882 * 214.97643 * 20 18 17 41 41 H 1.09004 * 117.49592 * 359.97368 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6811 -2.1438 1.1742 6 6 1.7184 -2.7670 2.5039 7 6 0.6383 -2.1698 3.3688 8 1 -0.0105 -1.4038 2.9707 9 6 0.4785 -2.6016 4.6685 10 7 1.2683 -3.5348 5.1532 11 14 -0.8606 -1.8620 5.7404 12 1 -1.6073 -0.8392 4.9646 13 1 -1.7936 -2.9320 6.1759 14 1 -0.2453 -1.2261 6.9331 15 6 2.5544 -2.8581 0.2334 16 6 1.8992 -4.1816 -0.1662 17 8 0.6865 -3.9180 -0.8747 18 6 -0.0629 -5.0903 -1.2005 19 6 -0.6551 -5.1816 -2.6084 20 6 -1.5703 -4.9301 -1.4082 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1265 1.4438 -0.0861 26 1 1.6081 1.9806 -0.8439 27 1 1.7485 1.9309 0.9299 28 1 1.5858 -0.2782 2.1355 29 1 3.1240 -0.6226 1.3086 30 1 1.5543 -3.8402 2.4069 31 1 2.6911 -2.5880 2.9620 32 1 1.1556 -3.8388 6.0674 33 1 2.7088 -2.2462 -0.6553 34 1 3.5149 -3.0571 0.7088 35 1 2.5786 -4.7449 -0.8060 36 1 1.6779 -4.7625 0.7292 37 1 0.2863 -6.0146 -0.7403 38 1 -0.4735 -4.3471 -3.2858 39 1 -0.6955 -6.1660 -3.0745 40 1 -2.2127 -5.7491 -1.0849 41 1 -1.9903 -3.9306 -1.2959 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711738663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:10 Heat of formation + Delta-G solvation = -26.779875 kcal Electronic energy + Delta-G solvation = -18268.926943 eV Core-core repulsion = 15570.658855 eV Total energy + Delta-G solvation = -2698.268088 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.31613 -37.24702 -34.80101 -33.74257 -32.31335 -28.89716 -26.91041 -26.54327 -24.26278 -22.44864 -22.18279 -21.59655 -20.31865 -19.06767 -16.76888 -16.36756 -15.36068 -15.06076 -14.73135 -14.34144 -13.94611 -13.66318 -13.50762 -13.05377 -12.56404 -12.26415 -11.89875 -11.83421 -11.73691 -11.40694 -11.35727 -11.09299 -10.87721 -10.74222 -10.57388 -10.48007 -10.33072 -10.20946 -10.11813 -9.87751 -9.52760 -9.08597 -8.67700 -8.38971 -7.09053 -5.99063 -3.98633 3.32934 3.40490 3.45949 3.91134 4.08210 4.46243 4.92190 5.03843 5.18668 5.36286 5.37896 5.42585 5.52912 5.61217 5.70354 5.75966 5.79392 5.85124 5.99400 6.04289 6.11004 6.16085 6.22111 6.25099 6.32787 6.37897 6.44547 6.56029 6.64036 6.69094 7.01586 7.12651 7.34890 7.39649 7.71502 7.88867 8.16828 8.30900 8.63341 9.10172 9.65142 11.12050 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.014581 B = 0.008245 C = 0.006445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.855350 B = 3395.368355 C = 4343.728074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 C -0.145 4.145 4 C 0.067 3.933 5 N -0.523 5.523 6 C 0.192 3.808 7 C -0.499 4.499 8 H 0.065 0.935 9 C 0.054 3.946 10 N -0.901 5.901 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.286 1.286 15 C 0.054 3.946 16 C 0.073 3.927 17 O -0.333 6.333 18 C 0.024 3.976 19 C -0.200 4.200 20 C -0.180 4.180 21 H 0.046 0.954 22 H 0.032 0.968 23 H 0.074 0.926 24 H 0.060 0.940 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.014 0.986 30 H 0.029 0.971 31 H -0.013 1.013 32 H 0.259 0.741 33 H 0.067 0.933 34 H 0.039 0.961 35 H 0.039 0.961 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.185 0.504 -12.413 12.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.108 4.108 3 C -0.203 4.203 4 C -0.061 4.061 5 N -0.248 5.248 6 C 0.066 3.934 7 C -0.537 4.537 8 H 0.083 0.917 9 C -0.147 4.147 10 N -0.541 5.541 11 Si 0.722 3.278 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.212 1.212 15 C -0.075 4.075 16 C -0.004 4.004 17 O -0.251 6.251 18 C -0.035 4.035 19 C -0.238 4.238 20 C -0.217 4.217 21 H 0.065 0.935 22 H 0.052 0.948 23 H 0.093 0.907 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.005 0.995 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.318 0.561 -12.460 12.476 hybrid contribution 0.250 0.040 1.102 1.131 sum -0.068 0.601 -11.358 11.374 Atomic orbital electron populations 1.21648 0.94837 1.02998 0.99400 1.21088 0.96786 0.94356 0.98569 1.21832 1.00137 0.97066 1.01276 1.22055 0.96325 0.89648 0.98077 1.62012 1.50198 1.01096 1.11460 1.19763 0.95670 0.95037 0.82887 1.21214 1.15588 1.21239 0.95688 0.91696 1.24977 0.96389 0.95318 0.98014 1.69971 1.38657 1.29689 1.15802 0.86498 0.81886 0.79101 0.80298 1.19629 1.21116 1.21220 1.22065 0.93743 0.94543 0.97102 1.22610 0.85258 0.97676 0.94855 1.87938 1.34787 1.27420 1.74952 1.22562 0.92921 0.90400 0.97576 1.23390 1.05451 1.02639 0.92293 1.23225 0.93257 1.03563 1.01700 0.93519 0.94850 0.90744 0.92142 0.93501 0.93324 0.92814 0.89686 0.96741 0.95255 0.99515 0.93131 0.91417 0.94353 0.94243 0.92450 0.87900 0.88601 0.88966 0.88634 0.88079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 9.09 37.15 0.34 -1.93 16 2 C -0.09 -1.48 2.97 -90.62 -0.27 -1.75 16 3 C -0.15 -2.04 9.19 37.16 0.34 -1.70 16 4 C 0.07 1.33 4.17 -3.82 -0.02 1.31 16 5 N -0.52 -11.27 3.82 -236.06 -0.90 -12.17 16 6 C 0.19 4.96 4.56 -4.98 -0.02 4.94 16 7 C -0.50 -13.99 8.23 -34.44 -0.28 -14.27 16 8 H 0.06 1.82 7.31 -52.49 -0.38 1.44 16 9 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 10 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 11 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 15 C 0.05 0.99 5.19 -3.83 -0.02 0.97 16 16 C 0.07 1.26 5.99 37.15 0.22 1.49 16 17 O -0.33 -6.04 10.53 -35.23 -0.37 -6.41 16 18 C 0.02 0.37 6.43 -26.73 -0.17 0.19 16 19 C -0.20 -2.49 10.48 -26.73 -0.28 -2.77 16 20 C -0.18 -2.48 10.48 -26.73 -0.28 -2.76 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 1.47 7.80 -51.93 -0.40 1.06 16 24 H 0.06 1.00 6.64 -51.93 -0.34 0.66 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 1.87 6.57 -51.92 -0.34 1.53 16 29 H 0.01 0.28 8.00 -51.93 -0.42 -0.14 16 30 H 0.03 0.81 6.48 -51.93 -0.34 0.47 16 31 H -0.01 -0.36 8.12 -51.93 -0.42 -0.78 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.07 1.14 6.46 -51.93 -0.34 0.81 16 34 H 0.04 0.69 8.02 -51.93 -0.42 0.27 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 1.09 6.59 -51.93 -0.34 0.75 16 37 H 0.10 1.42 7.94 -51.93 -0.41 1.00 16 38 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 LS Contribution 330.38 15.07 4.98 4.98 Total: -1.00 -29.75 330.38 -8.63 -38.39 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -7.52 Total: -0.69 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -0.54 Total: -14.86 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: -0.17 Total: -38.24 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.37 Total: -6.41 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.75 -8.63 -38.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711738663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.607 kcal (2) G-P(sol) polarization free energy of solvation -29.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds