Wall clock time and date at job start Sun Mar 29 2020 22:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46838 * 2 1 4 4 O 1.42899 * 109.47157 * 239.99763 * 2 1 3 5 5 C 1.52997 * 109.46675 * 119.99875 * 2 1 3 6 6 C 1.53125 * 109.52222 * 185.00132 * 5 2 1 7 7 C 1.53033 * 109.28287 * 177.61979 * 6 5 2 8 8 N 1.46851 * 109.52231 * 300.82460 * 7 6 5 9 9 C 1.46898 * 110.99682 * 185.83477 * 8 7 6 10 10 C 1.53006 * 109.47006 * 170.00115 * 9 8 7 11 11 C 1.50698 * 109.47184 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99819 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00046 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00192 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47418 * 89.99710 * 15 13 11 17 17 H 1.48498 * 109.47091 * 209.99770 * 15 13 11 18 18 H 1.48508 * 109.47394 * 329.99535 * 15 13 11 19 19 C 1.46846 * 111.19864 * 61.73920 * 8 7 6 20 20 C 1.53033 * 109.52460 * 298.25500 * 19 8 7 21 21 H 1.08994 * 109.47758 * 300.00341 * 1 2 3 22 22 H 1.09001 * 109.46768 * 60.00395 * 1 2 3 23 23 H 1.08996 * 109.46868 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47170 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47119 * 299.99390 * 3 2 1 26 26 H 1.08994 * 109.47263 * 59.99888 * 3 2 1 27 27 H 0.96696 * 114.00072 * 299.99618 * 4 2 1 28 28 H 1.08994 * 109.52566 * 64.87421 * 5 2 1 29 29 H 1.09005 * 109.50073 * 57.67955 * 6 5 2 30 30 H 1.08992 * 109.53280 * 297.58668 * 6 5 2 31 31 H 1.08989 * 109.46624 * 180.80484 * 7 6 5 32 32 H 1.09002 * 109.45127 * 60.82884 * 7 6 5 33 33 H 1.09001 * 109.47392 * 50.00413 * 9 8 7 34 34 H 1.09001 * 109.47520 * 290.00136 * 9 8 7 35 35 H 1.09001 * 109.47002 * 299.99782 * 10 9 8 36 36 H 1.08993 * 109.46955 * 60.00219 * 10 9 8 37 37 H 0.96996 * 120.00505 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.46555 * 58.27646 * 19 8 7 39 39 H 1.09001 * 109.46296 * 178.24247 * 19 8 7 40 40 H 1.08997 * 109.50475 * 299.23909 * 20 19 8 41 41 H 1.09002 * 109.50799 * 179.12007 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 6 3.5660 -0.6139 1.3150 7 6 4.0650 -1.2853 2.5965 8 7 3.4595 -0.6289 3.7623 9 6 4.0209 -1.1556 5.0134 10 6 3.5585 -0.2872 6.1852 11 6 4.1349 -0.8270 7.4687 12 1 4.7674 -1.7023 7.4505 13 6 3.8539 -0.2043 8.6663 14 7 3.0833 0.8612 8.6885 15 14 4.5678 -0.8739 10.2573 16 1 5.8824 -0.2342 10.5179 17 1 3.6415 -0.5766 11.3792 18 1 4.7471 -2.3434 10.1396 19 6 1.9970 -0.7601 3.7454 20 6 1.4363 -0.0729 2.4983 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.1299 1.4426 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8899 27 1 1.7211 -1.5952 -1.2328 28 1 1.7501 -1.7711 1.2076 29 1 3.8571 0.4365 1.3174 30 1 4.0039 -1.1109 0.4495 31 1 5.1499 -1.1981 2.6534 32 1 3.7853 -2.3388 2.5869 33 1 5.1094 -1.1410 4.9578 34 1 3.6784 -2.1796 5.1627 35 1 3.9011 0.7368 6.0359 36 1 2.4701 -0.3018 6.2409 37 1 2.8853 1.2991 9.5310 38 1 1.7272 -1.8161 3.7306 39 1 1.5801 -0.2913 4.6367 40 1 1.6939 0.9860 2.5193 41 1 0.3521 -0.1839 2.4779 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716395823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:04 Heat of formation + Delta-G solvation = -71.889754 kcal Electronic energy + Delta-G solvation = -18176.158976 eV Core-core repulsion = 15475.934776 eV Total energy + Delta-G solvation = -2700.224199 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.76570 -37.34783 -34.19249 -32.87681 -31.28902 -30.41527 -28.79377 -27.47218 -25.10282 -23.23830 -22.87088 -20.76839 -19.94053 -19.05480 -16.87991 -16.34293 -15.35893 -15.06653 -14.72848 -14.51675 -14.34987 -13.85418 -13.44620 -13.30990 -12.71664 -12.61355 -12.31105 -12.19091 -11.94403 -11.83554 -11.59850 -11.35837 -11.14853 -10.92052 -10.79288 -10.61737 -10.54187 -10.40648 -10.11615 -9.76215 -9.63484 -9.24915 -9.09483 -8.31508 -7.65272 -5.98435 -4.00661 3.32777 3.38847 3.41974 4.13065 4.40222 4.55368 4.64844 4.72917 4.87884 5.16847 5.19504 5.37409 5.40117 5.48930 5.53525 5.63515 5.75232 5.79693 5.82279 5.84958 5.94921 5.98003 6.00801 6.11846 6.17292 6.25788 6.32679 6.37885 6.47145 6.57253 6.64529 7.00262 7.56132 7.57265 7.64235 7.83904 7.93022 8.10873 8.45589 9.06646 9.62893 11.12980 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.051521 B = 0.004448 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.335876 B = 6292.814382 C = 6533.352111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.131 3.869 3 C -0.142 4.142 4 O -0.562 6.562 5 C -0.110 4.110 6 C -0.107 4.107 7 C 0.054 3.946 8 N -0.537 5.537 9 C 0.063 3.937 10 C 0.028 3.972 11 C -0.522 4.522 12 H 0.053 0.947 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.891 3.109 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.055 3.945 20 C -0.112 4.112 21 H 0.072 0.928 22 H 0.059 0.941 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.372 0.628 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.022 0.978 33 H 0.060 0.940 34 H 0.017 0.983 35 H 0.024 0.976 36 H 0.017 0.983 37 H 0.260 0.740 38 H 0.022 0.978 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.385 -2.610 -17.233 17.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.199 4.199 4 O -0.367 6.367 5 C -0.128 4.128 6 C -0.145 4.145 7 C -0.074 4.074 8 N -0.262 5.262 9 C -0.064 4.064 10 C -0.009 4.009 11 C -0.561 4.561 12 H 0.071 0.929 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.719 3.281 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.073 4.073 20 C -0.150 4.150 21 H 0.090 0.910 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.218 0.782 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.043 0.957 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.040 0.960 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.075 -1.398 -17.243 17.773 hybrid contribution -0.130 -1.834 1.181 2.185 sum -4.205 -3.231 -16.062 16.915 Atomic orbital electron populations 1.22551 0.96146 1.02231 1.02818 1.21217 0.92169 0.93160 0.84344 1.21861 1.02440 0.93434 1.02164 1.86541 1.77418 1.28590 1.44198 1.21848 0.96778 0.99299 0.94924 1.21628 0.94209 1.02074 0.96552 1.22064 0.99196 0.95109 0.91048 1.62017 1.04384 1.57253 1.02549 1.22318 0.98487 0.96687 0.88887 1.19097 0.96459 0.95333 0.90031 1.21206 1.30363 1.12607 0.91892 0.92852 1.24983 0.95225 0.94976 0.99078 1.69967 1.37056 1.19928 1.26327 0.86607 0.78949 0.79277 0.83227 1.20633 1.21234 1.19956 1.22087 0.88736 0.97906 0.98562 1.21761 0.98920 1.00998 0.93291 0.90952 0.92190 0.92610 0.91362 0.92529 0.90660 0.78170 0.91784 0.90756 0.91792 0.91230 0.96019 0.92179 0.96444 0.95730 0.96518 0.93020 0.95973 0.89516 0.90669 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 8.34 37.16 0.31 -1.34 16 2 C 0.13 1.38 0.87 -90.62 -0.08 1.30 16 3 C -0.14 -1.54 8.11 37.16 0.30 -1.24 16 4 O -0.56 -6.00 12.57 -35.23 -0.44 -6.45 16 5 C -0.11 -1.29 1.83 -90.49 -0.17 -1.46 16 6 C -0.11 -1.39 4.83 -26.65 -0.13 -1.52 16 7 C 0.05 0.83 5.46 -3.83 -0.02 0.81 16 8 N -0.54 -9.93 4.66 -234.67 -1.09 -11.02 16 9 C 0.06 1.36 4.90 -3.82 -0.02 1.34 16 10 C 0.03 0.74 4.90 -27.88 -0.14 0.60 16 11 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 12 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 15 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 C 0.06 0.93 5.29 -3.84 -0.02 0.91 16 20 C -0.11 -1.49 4.62 -26.65 -0.12 -1.62 16 21 H 0.07 0.66 6.41 -51.93 -0.33 0.33 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.78 6.30 -51.93 -0.33 0.46 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.79 6.51 -51.93 -0.34 0.46 16 27 H 0.37 2.72 9.04 45.56 0.41 3.13 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.02 6.22 -51.93 -0.32 0.70 16 30 H 0.06 0.77 7.90 -51.93 -0.41 0.36 16 31 H 0.07 1.05 8.01 -51.94 -0.42 0.64 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 1.29 7.99 -51.93 -0.41 0.87 16 34 H 0.02 0.38 8.12 -51.93 -0.42 -0.05 16 35 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.02 0.46 6.43 -51.93 -0.33 0.12 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 1.66 6.21 -51.93 -0.32 1.34 16 40 H 0.07 1.05 6.46 -51.93 -0.34 0.71 16 41 H 0.06 0.75 6.51 -51.93 -0.34 0.41 16 LS Contribution 310.25 15.07 4.68 4.68 Total: -1.00 -30.75 310.25 -8.04 -38.79 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.40 Total: -0.63 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -0.49 Total: -15.84 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.36 Total: -37.28 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.44 Total: -6.45 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.75 -8.04 -38.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716395823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.099 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds