Wall clock time and date at job start Sun Mar 29 2020 23:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47218 * 2 1 4 4 H 1.09001 * 109.47399 * 184.50386 * 3 2 1 5 5 C 1.50696 * 109.47383 * 64.50205 * 3 2 1 6 6 H 1.08007 * 119.99990 * 240.00077 * 5 3 2 7 7 C 1.37878 * 120.00204 * 59.99707 * 5 3 2 8 8 N 1.31511 * 119.99745 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99981 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47141 * 90.00112 * 9 7 5 11 11 H 1.48500 * 109.46872 * 210.00007 * 9 7 5 12 12 H 1.48496 * 109.47218 * 329.99955 * 9 7 5 13 13 N 1.46904 * 109.47317 * 304.50137 * 3 2 1 14 14 C 1.46900 * 111.00424 * 172.55349 * 13 3 2 15 15 C 1.52999 * 109.47175 * 196.22255 * 14 13 3 16 16 C 1.46901 * 110.99712 * 296.50973 * 13 3 2 17 17 C 1.53173 * 109.54436 * 88.07014 * 16 13 3 18 18 C 1.53113 * 109.15813 * 183.23948 * 17 16 13 19 19 O 1.42894 * 109.48578 * 57.47852 * 18 17 16 20 20 C 1.42901 * 114.09794 * 298.88890 * 19 18 17 21 21 C 1.53099 * 109.41793 * 61.15633 * 20 19 18 22 22 H 1.09003 * 109.46573 * 53.74164 * 1 2 3 23 23 H 1.08997 * 109.47018 * 293.73722 * 1 2 3 24 24 H 1.09001 * 109.46649 * 173.73792 * 1 2 3 25 25 H 1.09006 * 109.46829 * 120.00266 * 2 1 3 26 26 H 1.09005 * 109.47038 * 239.99459 * 2 1 3 27 27 H 0.97003 * 119.99958 * 179.97438 * 8 7 5 28 28 H 1.08994 * 109.47202 * 316.22910 * 14 13 3 29 29 H 1.09003 * 109.46771 * 76.22660 * 14 13 3 30 30 H 1.09001 * 109.46600 * 62.52268 * 15 14 13 31 31 H 1.08996 * 109.46858 * 182.51732 * 15 14 13 32 32 H 1.09000 * 109.47119 * 302.51967 * 15 14 13 33 33 H 1.08998 * 109.54638 * 208.24949 * 16 13 3 34 34 H 1.08996 * 109.52637 * 303.06048 * 17 16 13 35 35 H 1.09008 * 109.52123 * 63.25026 * 17 16 13 36 36 H 1.09003 * 109.40308 * 297.49330 * 18 17 16 37 37 H 1.08996 * 109.49122 * 177.51378 * 18 17 16 38 38 H 1.09000 * 109.48198 * 301.17896 * 20 19 18 39 39 H 1.08998 * 109.49562 * 181.14644 * 20 19 18 40 40 H 1.08995 * 109.52233 * 182.48159 * 21 20 19 41 41 H 1.09003 * 109.56646 * 62.32903 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1271 1.4435 -0.0807 5 6 1.6309 2.1199 1.2824 6 1 1.0052 2.9998 1.2525 7 6 2.0552 1.6166 2.4938 8 7 2.8174 0.5455 2.5302 9 14 1.5474 2.4561 4.0835 10 1 0.2723 1.8690 4.5679 11 1 2.6043 2.2576 5.1075 12 1 1.3620 3.9090 3.8387 13 7 1.4637 2.1656 -1.1414 14 6 1.7884 3.5968 -1.0763 15 6 0.8653 4.3726 -2.0180 16 6 1.9093 1.5820 -2.4137 17 6 0.9550 0.4561 -2.8232 18 6 1.4722 -0.1991 -4.1068 19 8 2.7994 -0.6837 -3.8932 20 6 3.7445 0.3333 -3.5550 21 6 3.3199 1.0084 -2.2481 22 1 -0.3632 0.6078 -0.8287 23 1 -0.3633 0.4137 0.9407 24 1 -0.3633 -1.0216 -0.1121 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 3.1163 0.1916 3.3825 28 1 1.6506 3.9546 -0.0560 29 1 2.8250 3.7482 -1.3774 30 1 -0.1678 4.2576 -1.6902 31 1 1.1357 5.4284 -2.0034 32 1 0.9705 3.9846 -3.0311 33 1 1.9171 2.3520 -3.1852 34 1 0.9083 -0.2888 -2.0288 35 1 -0.0395 0.8669 -2.9975 36 1 1.4787 0.5362 -4.9114 37 1 0.8212 -1.0298 -4.3789 38 1 3.7808 1.0756 -4.3523 39 1 4.7306 -0.1138 -3.4294 40 1 4.0153 1.8136 -2.0115 41 1 3.3228 0.2757 -1.4410 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716496298.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:10 Heat of formation + Delta-G solvation = -33.407701 kcal Electronic energy + Delta-G solvation = -19493.028571 eV Core-core repulsion = 16794.473078 eV Total energy + Delta-G solvation = -2698.555492 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.65216 -37.02517 -33.41434 -32.31352 -30.95195 -30.70867 -28.61851 -26.23212 -23.79098 -23.66293 -22.75543 -20.88804 -19.84136 -18.65647 -16.24921 -15.94901 -15.60672 -15.13261 -14.38381 -14.33755 -14.02371 -13.60720 -13.39784 -12.83686 -12.77412 -12.25691 -12.09452 -11.72183 -11.35244 -11.15030 -11.05456 -10.93443 -10.88912 -10.49650 -10.43795 -10.34387 -9.98721 -9.92843 -9.71514 -9.64535 -9.15813 -9.10883 -8.70318 -8.30023 -7.04461 -5.98869 -4.02568 3.30321 3.37339 3.39615 4.19462 4.41326 4.86947 5.25040 5.29984 5.35865 5.44648 5.57500 5.64376 5.74118 5.83424 5.83676 5.99509 6.04871 6.07727 6.21533 6.39138 6.44429 6.45492 6.50534 6.64493 6.69658 6.81345 6.83599 6.87012 6.89764 7.22356 7.42856 7.47680 7.51534 7.70475 7.83300 7.85536 8.23942 8.40143 8.65682 9.03261 9.61193 11.06845 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027134 B = 0.008547 C = 0.007684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.684305 B = 3275.365246 C = 3642.833021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.121 4.121 3 C 0.213 3.787 4 H 0.007 0.993 5 C -0.501 4.501 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.524 5.524 14 C 0.051 3.949 15 C -0.143 4.143 16 C 0.088 3.912 17 C -0.163 4.163 18 C 0.062 3.938 19 O -0.386 6.386 20 C 0.067 3.933 21 C -0.191 4.191 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.014 0.986 25 H 0.089 0.911 26 H 0.031 0.969 27 H 0.259 0.741 28 H 0.092 0.908 29 H 0.014 0.986 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.069 0.931 36 H 0.039 0.961 37 H 0.087 0.913 38 H 0.040 0.960 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.288 1.411 -10.299 10.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.158 4.158 3 C 0.108 3.892 4 H 0.025 0.975 5 C -0.539 4.539 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.719 3.281 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.201 1.201 13 N -0.247 5.247 14 C -0.077 4.077 15 C -0.201 4.201 16 C -0.022 4.022 17 C -0.200 4.200 18 C -0.016 4.016 19 O -0.305 6.305 20 C -0.010 4.010 21 C -0.230 4.230 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.033 0.967 25 H 0.108 0.892 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.110 0.890 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.121 0.879 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.105 0.895 38 H 0.058 0.942 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.662 1.075 -10.130 10.322 hybrid contribution 0.598 0.851 0.936 1.400 sum -1.064 1.926 -9.194 9.454 Atomic orbital electron populations 1.21620 0.97566 0.97330 1.01950 1.21832 0.94945 0.98462 1.00599 1.19315 0.92643 0.90635 0.86652 0.97524 1.21165 1.30806 1.11879 0.90068 0.91985 1.24888 0.95235 0.95072 0.98873 1.69874 1.35426 1.22167 1.25520 0.86612 0.78157 0.79842 0.83469 1.20761 1.21440 1.20055 1.62262 1.59276 1.01609 1.01569 1.22042 0.95099 0.89426 1.01130 1.21818 1.00848 0.98325 0.99120 1.21585 0.91656 0.95254 0.93667 1.22770 0.99067 0.99666 0.98516 1.22609 0.83777 0.98538 0.96641 1.87873 1.18434 1.34107 1.90101 1.22521 0.92336 0.90596 0.95587 1.23027 0.98824 1.01951 0.99197 0.92645 0.93132 0.96721 0.89227 0.95113 0.93067 0.88987 0.96750 0.92476 0.93680 0.93880 0.92320 0.87858 0.91245 0.94260 0.89486 0.94214 0.89592 0.91823 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 8.34 37.16 0.31 -2.44 16 2 C -0.12 -2.80 4.44 -26.73 -0.12 -2.92 16 3 C 0.21 5.07 1.23 -68.87 -0.08 4.99 16 4 H 0.01 0.19 6.08 -51.93 -0.32 -0.13 16 5 C -0.50 -13.09 6.79 -34.44 -0.23 -13.32 16 6 H 0.06 1.63 6.27 -52.48 -0.33 1.31 16 7 C 0.06 1.62 5.29 -17.82 -0.09 1.53 16 8 N -0.89 -24.82 11.30 55.43 0.63 -24.19 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.52 -10.64 3.31 -219.89 -0.73 -11.36 16 14 C 0.05 0.98 5.39 -3.82 -0.02 0.96 16 15 C -0.14 -2.25 10.00 37.16 0.37 -1.88 16 16 C 0.09 1.55 1.99 -67.53 -0.13 1.42 16 17 C -0.16 -2.68 4.09 -26.58 -0.11 -2.79 16 18 C 0.06 0.89 6.84 37.22 0.25 1.14 16 19 O -0.39 -6.37 10.77 -35.23 -0.38 -6.75 16 20 C 0.07 1.02 6.84 37.21 0.25 1.28 16 21 C -0.19 -3.41 4.08 -26.59 -0.11 -3.52 16 22 H 0.05 1.14 5.57 -51.93 -0.29 0.85 16 23 H 0.05 1.19 7.57 -51.93 -0.39 0.79 16 24 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.09 2.38 5.96 -51.93 -0.31 2.07 16 26 H 0.03 0.68 4.04 -51.93 -0.21 0.47 16 27 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.09 1.96 5.58 -51.93 -0.29 1.67 16 29 H 0.01 0.27 7.89 -51.93 -0.41 -0.14 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.04 0.64 6.60 -51.93 -0.34 0.29 16 33 H 0.06 0.98 6.23 -51.93 -0.32 0.66 16 34 H 0.10 1.92 3.44 -51.93 -0.18 1.74 16 35 H 0.07 1.09 7.97 -51.92 -0.41 0.68 16 36 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.15 7.88 -51.93 -0.41 0.74 16 41 H 0.10 2.05 4.50 -51.93 -0.23 1.81 16 LS Contribution 292.43 15.07 4.41 4.41 Total: -1.00 -27.16 292.43 -7.35 -34.50 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.54 Total: 2.92 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: 0.29 Total: -15.56 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: -0.10 Total: -35.55 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.38 Total: -6.75 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.16 -7.35 -34.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716496298.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.096 kcal (2) G-P(sol) polarization free energy of solvation -27.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds