Wall clock time and date at job start Sun Mar 29 2020 23:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47218 * 2 1 4 4 H 1.09001 * 109.47399 * 184.50386 * 3 2 1 5 5 C 1.50696 * 109.47383 * 64.50205 * 3 2 1 6 6 H 1.08007 * 119.99990 * 240.00077 * 5 3 2 7 7 C 1.37878 * 120.00204 * 59.99707 * 5 3 2 8 8 N 1.31511 * 119.99745 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99981 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47141 * 90.00112 * 9 7 5 11 11 H 1.48500 * 109.46872 * 210.00007 * 9 7 5 12 12 H 1.48496 * 109.47218 * 329.99955 * 9 7 5 13 13 N 1.46904 * 109.47317 * 304.50137 * 3 2 1 14 14 C 1.46900 * 111.00424 * 172.55349 * 13 3 2 15 15 C 1.52999 * 109.47175 * 196.22255 * 14 13 3 16 16 C 1.46901 * 110.99712 * 296.50973 * 13 3 2 17 17 C 1.53173 * 109.54436 * 88.07014 * 16 13 3 18 18 C 1.53113 * 109.15813 * 183.23948 * 17 16 13 19 19 O 1.42894 * 109.48578 * 57.47852 * 18 17 16 20 20 C 1.42901 * 114.09794 * 298.88890 * 19 18 17 21 21 C 1.53099 * 109.41793 * 61.15633 * 20 19 18 22 22 H 1.09003 * 109.46573 * 53.74164 * 1 2 3 23 23 H 1.08997 * 109.47018 * 293.73722 * 1 2 3 24 24 H 1.09001 * 109.46649 * 173.73792 * 1 2 3 25 25 H 1.09006 * 109.46829 * 120.00266 * 2 1 3 26 26 H 1.09005 * 109.47038 * 239.99459 * 2 1 3 27 27 H 0.97003 * 119.99958 * 179.97438 * 8 7 5 28 28 H 1.08994 * 109.47202 * 316.22910 * 14 13 3 29 29 H 1.09003 * 109.46771 * 76.22660 * 14 13 3 30 30 H 1.09001 * 109.46600 * 62.52268 * 15 14 13 31 31 H 1.08996 * 109.46858 * 182.51732 * 15 14 13 32 32 H 1.09000 * 109.47119 * 302.51967 * 15 14 13 33 33 H 1.08998 * 109.54638 * 208.24949 * 16 13 3 34 34 H 1.08996 * 109.52637 * 303.06048 * 17 16 13 35 35 H 1.09008 * 109.52123 * 63.25026 * 17 16 13 36 36 H 1.09003 * 109.40308 * 297.49330 * 18 17 16 37 37 H 1.08996 * 109.49122 * 177.51378 * 18 17 16 38 38 H 1.09000 * 109.48198 * 301.17896 * 20 19 18 39 39 H 1.08998 * 109.49562 * 181.14644 * 20 19 18 40 40 H 1.08995 * 109.52233 * 182.48159 * 21 20 19 41 41 H 1.09003 * 109.56646 * 62.32903 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1271 1.4435 -0.0807 5 6 1.6309 2.1199 1.2824 6 1 1.0052 2.9998 1.2525 7 6 2.0552 1.6166 2.4938 8 7 2.8174 0.5455 2.5302 9 14 1.5474 2.4561 4.0835 10 1 0.2723 1.8690 4.5679 11 1 2.6043 2.2576 5.1075 12 1 1.3620 3.9090 3.8387 13 7 1.4637 2.1656 -1.1414 14 6 1.7884 3.5968 -1.0763 15 6 0.8653 4.3726 -2.0180 16 6 1.9093 1.5820 -2.4137 17 6 0.9550 0.4561 -2.8232 18 6 1.4722 -0.1991 -4.1068 19 8 2.7994 -0.6837 -3.8932 20 6 3.7445 0.3333 -3.5550 21 6 3.3199 1.0084 -2.2481 22 1 -0.3632 0.6078 -0.8287 23 1 -0.3633 0.4137 0.9407 24 1 -0.3633 -1.0216 -0.1121 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 3.1163 0.1916 3.3825 28 1 1.6506 3.9546 -0.0560 29 1 2.8250 3.7482 -1.3774 30 1 -0.1678 4.2576 -1.6902 31 1 1.1357 5.4284 -2.0034 32 1 0.9705 3.9846 -3.0311 33 1 1.9171 2.3520 -3.1852 34 1 0.9083 -0.2888 -2.0288 35 1 -0.0395 0.8669 -2.9975 36 1 1.4787 0.5362 -4.9114 37 1 0.8212 -1.0298 -4.3789 38 1 3.7808 1.0756 -4.3523 39 1 4.7306 -0.1138 -3.4294 40 1 4.0153 1.8136 -2.0115 41 1 3.3228 0.2757 -1.4410 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716496298.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:09 Heat of formation + Delta-G solvation = -49.767296 kcal Electronic energy + Delta-G solvation = -19493.737976 eV Core-core repulsion = 16794.473078 eV Total energy + Delta-G solvation = -2699.264898 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.09083 -38.48228 -35.26457 -33.85395 -32.67760 -32.03465 -30.15529 -28.04925 -25.52784 -25.05419 -24.18022 -22.33931 -21.47583 -20.33650 -18.08731 -17.40168 -16.87929 -16.80873 -16.12480 -15.62036 -15.61379 -15.12265 -14.96441 -14.44800 -14.26805 -14.03306 -13.57117 -13.09130 -12.86201 -12.82437 -12.76399 -12.57449 -12.52058 -12.09436 -11.93781 -11.79772 -11.65985 -11.57350 -11.53534 -11.20979 -10.78534 -10.66476 -10.54587 -10.16460 -8.71867 -8.05143 -6.14421 1.40028 1.41913 1.50184 2.43554 3.02847 3.22261 3.38033 3.91908 4.04296 4.15149 4.29455 4.36885 4.42109 4.52661 4.60152 4.67574 4.70360 4.74382 4.79826 4.85250 4.89072 4.96404 5.06635 5.09241 5.18817 5.27802 5.28599 5.34702 5.41907 5.53383 5.60724 5.66784 5.77988 5.86426 6.01425 6.33623 6.38844 6.52618 6.88133 7.02703 7.52936 8.99291 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027134 B = 0.008547 C = 0.007684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.684305 B = 3275.365246 C = 3642.833021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.111 4.111 3 C 0.225 3.775 4 H -0.028 1.028 5 C -0.507 4.507 6 H 0.057 0.943 7 C 0.013 3.987 8 N -0.918 5.918 9 Si 0.947 3.053 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.269 1.269 13 N -0.526 5.526 14 C 0.049 3.951 15 C -0.131 4.131 16 C 0.086 3.914 17 C -0.159 4.159 18 C 0.062 3.938 19 O -0.403 6.403 20 C 0.072 3.928 21 C -0.186 4.186 22 H 0.067 0.933 23 H 0.024 0.976 24 H 0.033 0.967 25 H 0.053 0.947 26 H 0.042 0.958 27 H 0.257 0.743 28 H 0.064 0.936 29 H 0.011 0.989 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.053 0.947 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.266 2.151 -12.257 12.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.149 4.149 3 C 0.118 3.882 4 H -0.010 1.010 5 C -0.545 4.545 6 H 0.075 0.925 7 C -0.185 4.185 8 N -0.558 5.558 9 Si 0.774 3.226 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.194 1.194 13 N -0.249 5.249 14 C -0.079 4.079 15 C -0.188 4.188 16 C -0.023 4.023 17 C -0.197 4.197 18 C -0.015 4.015 19 O -0.322 6.322 20 C -0.005 4.005 21 C -0.225 4.225 22 H 0.086 0.914 23 H 0.044 0.956 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.125 0.875 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.649 1.827 -12.103 12.523 hybrid contribution 0.928 0.639 1.507 1.882 sum -1.721 2.466 -10.596 11.014 Atomic orbital electron populations 1.21485 0.96069 0.98572 1.00969 1.21666 0.96064 0.97880 0.99331 1.19011 0.90620 0.91202 0.87383 1.01041 1.21442 1.30140 1.11615 0.91327 0.92509 1.25580 0.95484 0.95682 1.01755 1.70020 1.36564 1.23371 1.25886 0.85718 0.77657 0.79159 0.80065 1.20551 1.21405 1.19380 1.62244 1.58948 1.02050 1.01693 1.22063 0.96017 0.89188 1.00674 1.21700 0.99490 0.98994 0.98641 1.21725 0.91808 0.96184 0.92601 1.22698 0.99444 0.98538 0.99001 1.22746 0.83025 0.99803 0.95894 1.87865 1.19405 1.34927 1.90020 1.22536 0.92525 0.90914 0.94571 1.22905 0.99038 1.00847 0.99711 0.91369 0.95639 0.94835 0.92877 0.94023 0.93337 0.91754 0.97083 0.92815 0.91599 0.92371 0.90323 0.90281 0.90077 0.91858 0.87540 0.91659 0.88716 0.92827 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.89 8.34 71.98 0.60 -4.29 16 2 C -0.11 -5.31 4.44 30.59 0.14 -5.18 16 3 C 0.22 10.97 1.23 44.16 0.05 11.03 16 4 H -0.03 -1.53 6.08 -2.39 -0.01 -1.55 16 5 C -0.51 -27.17 6.79 25.60 0.17 -26.99 16 6 H 0.06 3.05 6.27 -2.91 -0.02 3.03 16 7 C 0.01 0.73 5.29 84.66 0.45 1.18 16 8 N -0.92 -52.98 11.30 21.45 0.24 -52.74 16 9 Si 0.95 43.95 29.54 68.60 2.03 45.97 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 N -0.53 -21.15 3.31 -849.61 -2.81 -23.96 16 14 C 0.05 1.84 5.39 86.30 0.47 2.30 16 15 C -0.13 -3.77 10.00 71.98 0.72 -3.05 16 16 C 0.09 2.89 1.99 45.03 0.09 2.98 16 17 C -0.16 -4.86 4.09 30.69 0.13 -4.73 16 18 C 0.06 1.58 6.84 72.02 0.49 2.07 16 19 O -0.40 -12.29 10.77 -148.98 -1.60 -13.90 16 20 C 0.07 2.04 6.84 72.02 0.49 2.53 16 21 C -0.19 -6.58 4.08 30.69 0.13 -6.45 16 22 H 0.07 2.72 5.57 -2.39 -0.01 2.71 16 23 H 0.02 1.18 7.57 -2.39 -0.02 1.17 16 24 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 25 H 0.05 2.93 5.96 -2.38 -0.01 2.92 16 26 H 0.04 1.88 4.04 -2.38 -0.01 1.87 16 27 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 28 H 0.06 2.77 5.58 -2.39 -0.01 2.75 16 29 H 0.01 0.41 7.89 -2.39 -0.02 0.40 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 1.50 6.60 -2.39 -0.02 1.49 16 33 H 0.08 2.37 6.23 -2.39 -0.01 2.35 16 34 H 0.08 2.82 3.44 -2.39 -0.01 2.81 16 35 H 0.08 2.29 7.97 -2.38 -0.02 2.27 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.05 1.95 7.88 -2.39 -0.02 1.93 16 41 H 0.06 2.65 4.50 -2.39 -0.01 2.64 16 Total: -1.00 -59.68 292.43 2.79 -56.89 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 1.01 Total: 16.32 kcal Atomic # 6 Polarization: -32.52 SS G_CDS: 3.92 Total: -28.60 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -2.57 Total: -76.70 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -1.60 Total: -13.90 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -59.68 2.79 -56.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716496298.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.127 kcal (2) G-P(sol) polarization free energy of solvation -59.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds