Wall clock time and date at job start Sun Mar 29 2020 23:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46988 * 2 1 4 4 H 1.08994 * 109.47264 * 57.19752 * 3 2 1 5 5 C 1.50698 * 109.46948 * 177.20094 * 3 2 1 6 6 H 1.08000 * 120.00360 * 114.67775 * 5 3 2 7 7 C 1.37875 * 119.99727 * 294.67295 * 5 3 2 8 8 N 1.31519 * 120.00180 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99973 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47058 * 90.00003 * 9 7 5 11 11 H 1.48500 * 109.46950 * 209.99899 * 9 7 5 12 12 H 1.48498 * 109.47010 * 330.00185 * 9 7 5 13 13 N 1.46902 * 109.47130 * 297.19910 * 3 2 1 14 14 C 1.46897 * 111.00383 * 85.19168 * 13 3 2 15 15 C 1.52997 * 109.46990 * 76.53599 * 14 13 3 16 16 C 1.46908 * 110.99967 * 321.23715 * 13 3 2 17 17 C 1.53175 * 109.54444 * 302.87564 * 16 13 3 18 18 C 1.53102 * 109.15671 * 183.24034 * 17 16 13 19 19 O 1.42904 * 109.48596 * 57.47214 * 18 17 16 20 20 C 1.42902 * 114.10096 * 298.89197 * 19 18 17 21 21 C 1.53088 * 109.41525 * 61.15576 * 20 19 18 22 22 H 1.08996 * 109.46487 * 190.03641 * 1 2 3 23 23 H 1.08997 * 109.46827 * 310.03911 * 1 2 3 24 24 H 1.09001 * 109.46800 * 70.03636 * 1 2 3 25 25 H 1.09002 * 109.46980 * 240.00403 * 2 1 3 26 26 H 1.08991 * 109.47331 * 119.99880 * 2 1 3 27 27 H 0.96998 * 119.99716 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.47626 * 196.54115 * 14 13 3 29 29 H 1.09004 * 109.47004 * 316.54451 * 14 13 3 30 30 H 1.09002 * 109.47674 * 184.69349 * 15 14 13 31 31 H 1.08997 * 109.47475 * 304.69808 * 15 14 13 32 32 H 1.09008 * 109.47030 * 64.69534 * 15 14 13 33 33 H 1.09001 * 109.53587 * 63.05315 * 16 13 3 34 34 H 1.09005 * 109.52063 * 303.05882 * 17 16 13 35 35 H 1.09002 * 109.52100 * 63.24303 * 17 16 13 36 36 H 1.09000 * 109.40605 * 297.49250 * 18 17 16 37 37 H 1.09002 * 109.48249 * 177.50111 * 18 17 16 38 38 H 1.09003 * 109.47351 * 301.17674 * 20 19 18 39 39 H 1.08996 * 109.48981 * 181.14953 * 20 19 18 40 40 H 1.09003 * 109.52290 * 182.48587 * 21 20 19 41 41 H 1.08995 * 109.57547 * 62.33301 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6363 1.9707 0.8637 5 6 3.5455 1.4431 0.0694 6 1 4.1242 1.8199 -0.7610 7 6 4.1839 0.9626 1.1930 8 7 3.4792 0.5034 2.2040 9 14 6.0500 0.9640 1.2794 10 1 6.5174 2.2458 1.8655 11 1 6.5069 -0.1648 2.1292 12 1 6.6089 0.8120 -0.0880 13 7 1.6064 2.1152 -1.2319 14 6 0.2524 2.6651 -1.0828 15 6 0.3112 3.9460 -0.2481 16 6 1.6814 1.2054 -2.3829 17 6 3.1109 0.6734 -2.5233 18 6 3.1983 -0.2089 -3.7714 19 8 2.8012 0.5463 -4.9178 20 6 1.4569 1.0278 -4.8623 21 6 1.3001 1.9615 -3.6593 22 1 -0.3632 -1.0119 0.1791 23 1 -0.3633 0.6611 0.7868 24 1 -0.3633 0.3509 -0.9659 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.9284 0.1650 2.9943 28 1 -0.1584 2.8911 -2.0668 29 1 -0.3834 1.9345 -0.5827 30 1 -0.7007 4.3086 -0.0671 31 1 0.7981 3.7370 0.7044 32 1 0.8782 4.7052 -0.7871 33 1 0.9950 0.3719 -2.2339 34 1 3.8029 1.5100 -2.6208 35 1 3.3694 0.0866 -1.6418 36 1 2.5371 -1.0676 -3.6549 37 1 4.2239 -0.5545 -3.9012 38 1 0.7730 0.1852 -4.7600 39 1 1.2277 1.5729 -5.7779 40 1 0.2647 2.2951 -3.5896 41 1 1.9536 2.8255 -3.7799 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716496300.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:12 Heat of formation + Delta-G solvation = -35.157186 kcal Electronic energy + Delta-G solvation = -19490.733148 eV Core-core repulsion = 16792.101793 eV Total energy + Delta-G solvation = -2698.631356 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.54865 -37.31277 -33.18121 -32.15316 -31.34820 -30.45869 -28.68594 -26.82974 -23.61598 -23.44411 -22.64544 -20.82384 -19.99501 -18.62236 -16.70981 -15.77908 -15.58231 -15.02139 -14.48407 -14.36918 -14.13195 -13.59834 -13.47529 -12.70155 -12.53949 -12.51269 -12.04948 -11.45019 -11.31305 -11.20810 -10.97717 -10.95346 -10.88000 -10.75822 -10.59071 -10.28410 -10.24966 -10.03594 -9.75333 -9.59045 -9.33669 -9.11736 -8.74478 -8.26635 -6.99344 -5.98961 -3.98383 3.32386 3.39505 3.42800 4.24824 4.43373 4.87227 5.23205 5.31292 5.42472 5.46728 5.63784 5.72274 5.81879 5.89260 5.98275 6.01865 6.05849 6.08135 6.08586 6.19936 6.26056 6.37352 6.43518 6.50401 6.58497 6.64222 6.76745 6.86519 6.95462 6.97536 7.22697 7.26994 7.48536 7.61456 7.67926 7.91199 8.26391 8.42413 8.64622 9.07312 9.63740 11.08795 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019190 B = 0.010497 C = 0.008218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.722154 B = 2666.765321 C = 3406.170853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.153 4.153 3 C 0.216 3.784 4 H 0.042 0.958 5 C -0.492 4.492 6 H 0.068 0.932 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.273 1.273 13 N -0.524 5.524 14 C 0.026 3.974 15 C -0.140 4.140 16 C 0.093 3.907 17 C -0.149 4.149 18 C 0.057 3.943 19 O -0.391 6.391 20 C 0.066 3.934 21 C -0.153 4.153 22 H 0.032 0.968 23 H 0.046 0.954 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.087 0.913 27 H 0.259 0.741 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.040 0.960 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.037 0.963 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.040 0.960 37 H 0.088 0.912 38 H 0.041 0.959 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.575 0.116 -8.486 10.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.192 4.192 3 C 0.109 3.891 4 H 0.060 0.940 5 C -0.530 4.530 6 H 0.087 0.913 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.718 3.282 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.198 1.198 13 N -0.248 5.248 14 C -0.102 4.102 15 C -0.198 4.198 16 C -0.016 4.016 17 C -0.186 4.186 18 C -0.020 4.020 19 O -0.310 6.310 20 C -0.012 4.012 21 C -0.191 4.191 22 H 0.051 0.949 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.105 0.895 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.130 0.870 36 H 0.058 0.942 37 H 0.106 0.894 38 H 0.060 0.940 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.105 0.476 -8.530 9.952 hybrid contribution 0.197 -0.723 0.658 0.997 sum -4.908 -0.247 -7.873 9.281 Atomic orbital electron populations 1.22157 0.99699 0.99414 0.99795 1.22332 0.91638 1.02629 1.02639 1.19354 0.95252 0.88196 0.86256 0.94038 1.21317 0.90820 1.39300 1.01574 0.91344 1.24946 0.97931 0.95922 0.95684 1.69921 1.34903 1.42618 1.06038 0.86628 0.86158 0.77433 0.77997 1.20865 1.21555 1.19826 1.62396 1.21246 1.36063 1.05093 1.22472 0.92029 0.96765 0.98951 1.21712 0.99584 0.97553 1.00963 1.21458 0.96535 0.93522 0.90101 1.22671 0.96942 1.00824 0.98150 1.22779 0.99749 0.93372 0.86076 1.87849 1.29403 1.71912 1.41802 1.22490 0.83963 0.96370 0.98337 1.22376 1.01555 0.99814 0.95307 0.94918 0.93452 0.93896 0.93482 0.89488 0.93156 0.92608 0.93630 0.94047 0.92116 0.92929 0.94540 0.90743 0.87005 0.94156 0.89387 0.94031 0.89694 0.91736 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.01 37.16 0.30 -2.63 16 2 C -0.15 -3.41 4.56 -26.72 -0.12 -3.53 16 3 C 0.22 5.07 1.67 -68.86 -0.12 4.96 16 4 H 0.04 1.10 6.48 -51.93 -0.34 0.77 16 5 C -0.49 -12.68 6.31 -34.44 -0.22 -12.90 16 6 H 0.07 1.79 5.86 -52.49 -0.31 1.48 16 7 C 0.06 1.48 5.31 -17.82 -0.09 1.39 16 8 N -0.90 -24.77 11.71 55.43 0.65 -24.12 16 9 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.52 -10.68 4.22 -219.88 -0.93 -11.60 16 14 C 0.03 0.46 4.94 -3.83 -0.02 0.44 16 15 C -0.14 -2.41 10.07 37.16 0.37 -2.04 16 16 C 0.09 1.70 1.30 -67.53 -0.09 1.61 16 17 C -0.15 -2.85 3.57 -26.59 -0.09 -2.94 16 18 C 0.06 0.94 6.84 37.21 0.25 1.19 16 19 O -0.39 -6.53 10.77 -35.23 -0.38 -6.91 16 20 C 0.07 0.94 6.84 37.20 0.25 1.20 16 21 C -0.15 -2.40 5.15 -26.59 -0.14 -2.54 16 22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.91 7.51 -51.93 -0.39 0.53 16 24 H 0.04 0.76 4.84 -51.93 -0.25 0.51 16 25 H 0.05 1.02 4.67 -51.93 -0.24 0.78 16 26 H 0.09 2.21 6.45 -51.93 -0.33 1.87 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.06 0.89 5.55 -51.93 -0.29 0.61 16 29 H 0.05 0.82 3.96 -51.93 -0.21 0.62 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.18 6.76 -51.93 -0.35 0.83 16 32 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 33 H 0.04 0.69 4.94 -51.93 -0.26 0.43 16 34 H 0.07 1.56 7.16 -51.93 -0.37 1.19 16 35 H 0.11 2.42 4.42 -51.93 -0.23 2.19 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.92 6.19 -51.93 -0.32 0.60 16 41 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 290.36 15.07 4.38 4.38 Total: -1.00 -26.91 290.36 -7.41 -34.32 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -6.40 Total: 3.79 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 0.29 Total: -15.78 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: -0.28 Total: -35.72 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.38 Total: -6.91 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -26.91 -7.41 -34.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716496300.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.837 kcal (2) G-P(sol) polarization free energy of solvation -26.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds