Wall clock time and date at job start Sun Mar 29 2020 23:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46988 * 2 1 4 4 H 1.08994 * 109.47264 * 57.19752 * 3 2 1 5 5 C 1.50698 * 109.46948 * 177.20094 * 3 2 1 6 6 H 1.08000 * 120.00360 * 114.67775 * 5 3 2 7 7 C 1.37875 * 119.99727 * 294.67295 * 5 3 2 8 8 N 1.31519 * 120.00180 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99973 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47058 * 90.00003 * 9 7 5 11 11 H 1.48500 * 109.46950 * 209.99899 * 9 7 5 12 12 H 1.48498 * 109.47010 * 330.00185 * 9 7 5 13 13 N 1.46902 * 109.47130 * 297.19910 * 3 2 1 14 14 C 1.46897 * 111.00383 * 85.19168 * 13 3 2 15 15 C 1.52997 * 109.46990 * 76.53599 * 14 13 3 16 16 C 1.46908 * 110.99967 * 321.23715 * 13 3 2 17 17 C 1.53175 * 109.54444 * 302.87564 * 16 13 3 18 18 C 1.53102 * 109.15671 * 183.24034 * 17 16 13 19 19 O 1.42904 * 109.48596 * 57.47214 * 18 17 16 20 20 C 1.42902 * 114.10096 * 298.89197 * 19 18 17 21 21 C 1.53088 * 109.41525 * 61.15576 * 20 19 18 22 22 H 1.08996 * 109.46487 * 190.03641 * 1 2 3 23 23 H 1.08997 * 109.46827 * 310.03911 * 1 2 3 24 24 H 1.09001 * 109.46800 * 70.03636 * 1 2 3 25 25 H 1.09002 * 109.46980 * 240.00403 * 2 1 3 26 26 H 1.08991 * 109.47331 * 119.99880 * 2 1 3 27 27 H 0.96998 * 119.99716 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.47626 * 196.54115 * 14 13 3 29 29 H 1.09004 * 109.47004 * 316.54451 * 14 13 3 30 30 H 1.09002 * 109.47674 * 184.69349 * 15 14 13 31 31 H 1.08997 * 109.47475 * 304.69808 * 15 14 13 32 32 H 1.09008 * 109.47030 * 64.69534 * 15 14 13 33 33 H 1.09001 * 109.53587 * 63.05315 * 16 13 3 34 34 H 1.09005 * 109.52063 * 303.05882 * 17 16 13 35 35 H 1.09002 * 109.52100 * 63.24303 * 17 16 13 36 36 H 1.09000 * 109.40605 * 297.49250 * 18 17 16 37 37 H 1.09002 * 109.48249 * 177.50111 * 18 17 16 38 38 H 1.09003 * 109.47351 * 301.17674 * 20 19 18 39 39 H 1.08996 * 109.48981 * 181.14953 * 20 19 18 40 40 H 1.09003 * 109.52290 * 182.48587 * 21 20 19 41 41 H 1.08995 * 109.57547 * 62.33301 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6363 1.9707 0.8637 5 6 3.5455 1.4431 0.0694 6 1 4.1242 1.8199 -0.7610 7 6 4.1839 0.9626 1.1930 8 7 3.4792 0.5034 2.2040 9 14 6.0500 0.9640 1.2794 10 1 6.5174 2.2458 1.8655 11 1 6.5069 -0.1648 2.1292 12 1 6.6089 0.8120 -0.0880 13 7 1.6064 2.1152 -1.2319 14 6 0.2524 2.6651 -1.0828 15 6 0.3112 3.9460 -0.2481 16 6 1.6814 1.2054 -2.3829 17 6 3.1109 0.6734 -2.5233 18 6 3.1983 -0.2089 -3.7714 19 8 2.8012 0.5463 -4.9178 20 6 1.4569 1.0278 -4.8623 21 6 1.3001 1.9615 -3.6593 22 1 -0.3632 -1.0119 0.1791 23 1 -0.3633 0.6611 0.7868 24 1 -0.3633 0.3509 -0.9659 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.9284 0.1650 2.9943 28 1 -0.1584 2.8911 -2.0668 29 1 -0.3834 1.9345 -0.5827 30 1 -0.7007 4.3086 -0.0671 31 1 0.7981 3.7370 0.7044 32 1 0.8782 4.7052 -0.7871 33 1 0.9950 0.3719 -2.2339 34 1 3.8029 1.5100 -2.6208 35 1 3.3694 0.0866 -1.6418 36 1 2.5371 -1.0676 -3.6549 37 1 4.2239 -0.5545 -3.9012 38 1 0.7730 0.1852 -4.7600 39 1 1.2277 1.5729 -5.7779 40 1 0.2647 2.2951 -3.5896 41 1 1.9536 2.8255 -3.7799 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716496300.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:11 Heat of formation + Delta-G solvation = -52.046531 kcal Electronic energy + Delta-G solvation = -19491.465525 eV Core-core repulsion = 16792.101793 eV Total energy + Delta-G solvation = -2699.363733 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.01913 -38.75503 -35.01579 -33.58180 -33.07395 -31.81500 -30.26713 -28.57347 -25.27841 -24.92255 -24.05356 -22.38185 -21.52753 -20.20930 -18.55404 -17.28444 -16.93156 -16.65607 -16.09686 -15.88438 -15.63926 -15.14230 -14.87704 -14.31399 -14.09555 -14.02509 -13.53884 -13.19144 -12.86799 -12.76376 -12.68662 -12.56534 -12.43056 -12.32169 -12.08829 -12.00908 -11.92138 -11.60314 -11.33634 -11.08367 -10.85004 -10.82303 -10.46226 -10.16851 -8.61259 -8.03280 -6.07298 1.41405 1.44104 1.52573 2.46619 3.03768 3.25575 3.38636 3.95257 4.10599 4.19957 4.31369 4.37765 4.41566 4.47140 4.52847 4.58959 4.65664 4.69035 4.70918 4.76847 4.89778 4.93149 4.99748 5.07134 5.13526 5.17817 5.24528 5.28404 5.39827 5.46516 5.58733 5.59070 5.71234 5.85514 5.89922 6.35128 6.38228 6.70505 6.89107 7.04758 7.57906 9.03016 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019190 B = 0.010497 C = 0.008218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.722154 B = 2666.765321 C = 3406.170853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.145 4.145 3 C 0.225 3.775 4 H 0.006 0.994 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.010 3.990 8 N -0.923 5.923 9 Si 0.942 3.058 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.268 1.268 13 N -0.537 5.537 14 C 0.023 3.977 15 C -0.135 4.135 16 C 0.091 3.909 17 C -0.143 4.143 18 C 0.064 3.936 19 O -0.402 6.402 20 C 0.063 3.937 21 C -0.144 4.144 22 H 0.048 0.952 23 H 0.039 0.961 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.256 0.744 28 H 0.083 0.917 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.027 0.973 32 H 0.051 0.949 33 H 0.039 0.961 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.113 0.887 40 H 0.086 0.914 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.731 0.085 -10.548 12.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.184 4.184 3 C 0.118 3.882 4 H 0.023 0.977 5 C -0.531 4.531 6 H 0.078 0.922 7 C -0.188 4.188 8 N -0.564 5.564 9 Si 0.770 3.230 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.192 1.192 13 N -0.261 5.261 14 C -0.104 4.104 15 C -0.193 4.193 16 C -0.017 4.017 17 C -0.181 4.181 18 C -0.013 4.013 19 O -0.321 6.321 20 C -0.014 4.014 21 C -0.182 4.182 22 H 0.067 0.933 23 H 0.058 0.942 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.131 0.869 40 H 0.104 0.896 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.265 0.453 -10.612 12.331 hybrid contribution 0.527 -0.665 1.268 1.526 sum -5.738 -0.213 -9.343 10.967 Atomic orbital electron populations 1.22029 0.96961 1.00398 1.00600 1.22131 0.94037 1.01242 1.00996 1.19031 0.93851 0.88734 0.86605 0.97655 1.21563 0.92383 1.38194 1.00974 0.92227 1.25571 1.01406 0.96119 0.95658 1.70043 1.36088 1.43811 1.06434 0.85788 0.82112 0.77105 0.78028 1.21046 1.21419 1.19208 1.62314 1.23207 1.36258 1.04324 1.22578 0.90608 0.96724 1.00497 1.21673 1.01054 0.97471 0.99125 1.21531 0.95914 0.93657 0.90610 1.22493 0.97090 0.99968 0.98540 1.22691 1.00847 0.93016 0.84760 1.87844 1.30946 1.71998 1.41358 1.22708 0.83103 0.96826 0.98737 1.22316 1.02337 0.99281 0.94297 0.93322 0.94203 0.91957 0.93066 0.93076 0.93469 0.89905 0.93566 0.91016 0.95389 0.92979 0.94355 0.93283 0.89942 0.92738 0.88566 0.92438 0.86919 0.89614 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 8.01 71.99 0.58 -4.69 16 2 C -0.14 -6.50 4.56 30.60 0.14 -6.36 16 3 C 0.22 10.82 1.67 44.17 0.07 10.89 16 4 H 0.01 0.31 6.48 -2.39 -0.02 0.29 16 5 C -0.49 -26.15 6.31 25.60 0.16 -25.99 16 6 H 0.06 3.21 5.86 -2.91 -0.02 3.20 16 7 C 0.01 0.55 5.31 84.65 0.45 1.00 16 8 N -0.92 -52.78 11.71 21.45 0.25 -52.53 16 9 Si 0.94 43.94 29.54 68.60 2.03 45.97 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 N -0.54 -21.63 4.22 -849.56 -3.58 -25.21 16 14 C 0.02 0.79 4.94 86.30 0.43 1.21 16 15 C -0.14 -4.52 10.07 71.98 0.72 -3.79 16 16 C 0.09 3.21 1.30 45.03 0.06 3.27 16 17 C -0.14 -5.45 3.57 30.69 0.11 -5.34 16 18 C 0.06 1.99 6.84 72.02 0.49 2.48 16 19 O -0.40 -12.35 10.77 -148.98 -1.60 -13.95 16 20 C 0.06 1.56 6.84 72.01 0.49 2.06 16 21 C -0.14 -4.11 5.15 30.68 0.16 -3.95 16 22 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.04 1.51 7.51 -2.39 -0.02 1.49 16 24 H 0.06 2.04 4.84 -2.39 -0.01 2.03 16 25 H 0.05 2.22 4.67 -2.39 -0.01 2.21 16 26 H 0.05 2.67 6.45 -2.39 -0.02 2.65 16 27 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 28 H 0.08 2.36 5.55 -2.39 -0.01 2.34 16 29 H 0.05 1.57 3.96 -2.38 -0.01 1.56 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.03 1.09 6.76 -2.39 -0.02 1.08 16 32 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.04 1.35 4.94 -2.39 -0.01 1.34 16 34 H 0.05 2.08 7.16 -2.38 -0.02 2.06 16 35 H 0.08 3.62 4.42 -2.39 -0.01 3.61 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.09 2.08 6.19 -2.39 -0.01 2.07 16 41 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -59.22 290.36 1.97 -57.25 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 1.01 Total: 17.69 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: 3.86 Total: -29.22 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -3.33 Total: -77.74 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -1.60 Total: -13.95 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -59.22 1.97 -57.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716496300.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.200 kcal (2) G-P(sol) polarization free energy of solvation -59.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds