Wall clock time and date at job start Sun Mar 29 2020 22:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47076 * 2 1 4 4 O 1.42899 * 109.47207 * 240.00037 * 2 1 3 5 5 C 1.53004 * 109.47452 * 120.00200 * 2 1 3 6 6 H 1.09006 * 109.53516 * 64.89867 * 5 2 1 7 7 C 1.53121 * 109.50012 * 304.80569 * 5 2 1 8 8 C 1.53123 * 109.15709 * 182.40199 * 7 5 2 9 9 C 1.53036 * 109.27910 * 57.65405 * 8 7 5 10 10 N 1.46848 * 109.52325 * 300.81822 * 9 8 7 11 11 C 1.46901 * 111.00109 * 185.83663 * 10 9 8 12 12 C 1.53000 * 109.46769 * 45.79389 * 11 10 9 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99776 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00001 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00114 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99955 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46999 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46979 * 120.00420 * 17 15 13 20 20 H 1.48498 * 109.46942 * 240.00334 * 17 15 13 21 21 C 1.46849 * 111.19595 * 61.74468 * 10 9 8 22 22 H 1.08999 * 109.46739 * 299.99281 * 1 2 3 23 23 H 1.08993 * 109.47110 * 60.00053 * 1 2 3 24 24 H 1.09005 * 109.46665 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47455 * 179.97438 * 3 2 1 26 26 H 1.08994 * 109.47723 * 300.00387 * 3 2 1 27 27 H 1.09009 * 109.47141 * 60.00093 * 3 2 1 28 28 H 0.96701 * 114.00329 * 179.97438 * 4 2 1 29 29 H 1.09001 * 109.52047 * 302.30305 * 7 5 2 30 30 H 1.08999 * 109.52725 * 62.43525 * 7 5 2 31 31 H 1.09005 * 109.50464 * 177.59262 * 8 7 5 32 32 H 1.09001 * 109.50852 * 297.71080 * 8 7 5 33 33 H 1.08997 * 109.46297 * 180.80471 * 9 8 7 34 34 H 1.09006 * 109.46210 * 60.83495 * 9 8 7 35 35 H 1.09002 * 109.47401 * 285.79096 * 11 10 9 36 36 H 1.09001 * 109.46874 * 165.79109 * 11 10 9 37 37 H 1.09001 * 109.47194 * 299.99524 * 12 11 10 38 38 H 1.08992 * 109.47399 * 59.99697 * 12 11 10 39 39 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.46678 * 58.27111 * 21 10 9 41 41 H 1.09006 * 109.46228 * 178.25542 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2492 6 1 1.7508 -1.7714 1.2075 7 6 1.4338 -0.0733 2.4970 8 6 1.9955 -0.7617 3.7441 9 6 3.5220 -0.6529 3.7370 10 7 4.0535 -1.2878 2.5242 11 6 5.5218 -1.3251 2.5498 12 6 5.9959 -1.8033 3.9237 13 6 7.5022 -1.8422 3.9497 14 1 8.0650 -1.5541 3.0741 15 6 8.1618 -2.2444 5.0918 16 7 7.4764 -2.5947 6.1581 17 14 10.0289 -2.2932 5.1238 18 1 10.5582 -1.8551 3.8074 19 1 10.5296 -1.3839 6.1858 20 1 10.4830 -3.6790 5.4041 21 6 3.5653 -0.6137 1.3144 22 1 -0.3633 0.5137 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6766 1.9563 0.8901 28 1 2.9703 -0.7115 -1.2331 29 1 1.6906 0.9858 2.5187 30 1 0.3497 -0.1849 2.4753 31 1 1.6003 -0.2766 4.6367 32 1 1.7055 -1.8124 3.7417 33 1 3.9259 -1.1545 4.6163 34 1 3.8113 0.3979 3.7534 35 1 5.9141 -0.3265 2.3574 36 1 5.8813 -2.0108 1.7825 37 1 5.6365 -1.1177 4.6910 38 1 5.6037 -2.8018 4.1161 39 1 7.9404 -2.8773 6.9617 40 1 3.8544 0.4369 1.3422 41 1 4.0005 -1.0870 0.4342 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719682102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:29 Heat of formation + Delta-G solvation = -69.528716 kcal Electronic energy + Delta-G solvation = -18318.735859 eV Core-core repulsion = 15618.614042 eV Total energy + Delta-G solvation = -2700.121817 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.86511 -37.24814 -34.31760 -32.82536 -31.75504 -30.11006 -28.59922 -27.56226 -25.07296 -23.71130 -22.57060 -21.25020 -19.56435 -18.90628 -16.95373 -16.42925 -15.38597 -14.97292 -14.68808 -14.50218 -14.36383 -14.08429 -13.59012 -13.16773 -12.95344 -12.56309 -12.23371 -12.13099 -12.05570 -11.94140 -11.74058 -11.27441 -11.10532 -10.98497 -10.85896 -10.59957 -10.55107 -10.23640 -10.03304 -9.94324 -9.74319 -9.24291 -9.06048 -8.35702 -7.66886 -6.01797 -4.04047 3.30067 3.37580 3.41552 4.15572 4.31929 4.48512 4.68588 4.83952 4.89663 5.10011 5.12979 5.32918 5.35074 5.47586 5.57270 5.61419 5.68067 5.72915 5.73789 5.86178 5.91960 5.97157 6.02036 6.06805 6.13086 6.22586 6.32525 6.37566 6.44270 6.59843 6.65092 6.92085 7.51722 7.62010 7.62395 7.79571 7.84787 8.03888 8.41616 9.02786 9.59857 11.09644 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.043746 B = 0.004820 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.907179 B = 5808.276621 C = 6194.744643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.132 3.868 3 C -0.183 4.183 4 O -0.563 6.563 5 C -0.108 4.108 6 H 0.085 0.915 7 C -0.115 4.115 8 C -0.117 4.117 9 C 0.050 3.950 10 N -0.538 5.538 11 C 0.063 3.937 12 C 0.020 3.980 13 C -0.521 4.521 14 H 0.054 0.946 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.056 3.944 22 H 0.072 0.928 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.375 0.625 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.024 0.976 35 H 0.018 0.982 36 H 0.062 0.938 37 H 0.020 0.980 38 H 0.025 0.975 39 H 0.260 0.740 40 H 0.031 0.969 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.060 6.818 -9.502 17.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.091 3.909 3 C -0.240 4.240 4 O -0.370 6.370 5 C -0.127 4.127 6 H 0.103 0.897 7 C -0.152 4.152 8 C -0.155 4.155 9 C -0.078 4.078 10 N -0.262 5.262 11 C -0.064 4.064 12 C -0.017 4.017 13 C -0.560 4.560 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.072 4.072 22 H 0.091 0.909 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.223 0.777 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.042 0.958 35 H 0.036 0.964 36 H 0.080 0.920 37 H 0.039 0.961 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.049 0.951 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.838 6.212 -9.442 17.866 hybrid contribution 2.048 0.871 0.273 2.242 sum -11.790 7.083 -9.169 16.529 Atomic orbital electron populations 1.21794 0.92931 1.02734 1.02117 1.21183 0.94585 0.90539 0.84600 1.22608 1.01981 0.97005 1.02434 1.86508 1.26844 1.79648 1.43958 1.21847 0.95504 1.01092 0.94244 0.89699 1.21721 0.99588 0.99423 0.94500 1.21617 0.95793 1.01247 0.96840 1.22196 0.93922 0.96816 0.94826 1.61993 1.10567 1.52721 1.00905 1.22313 0.83586 0.98466 1.02037 1.19248 0.95520 0.97125 0.89772 1.21224 0.91757 1.44615 0.98402 0.92725 1.24990 0.98340 0.95313 0.95651 1.69971 1.35251 1.45224 1.02847 0.86539 0.85813 0.77676 0.77988 1.19763 1.21045 1.20944 1.22148 0.94174 0.96517 0.94380 0.90925 0.92292 0.91913 0.91907 0.92218 0.91412 0.77655 0.92218 0.91847 0.91922 0.91268 0.88821 0.95772 0.96384 0.91991 0.96146 0.95675 0.93030 0.95096 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.36 37.16 0.31 -1.06 16 2 C 0.13 1.45 0.93 -90.62 -0.08 1.37 16 3 C -0.18 -1.84 8.08 37.15 0.30 -1.54 16 4 O -0.56 -6.78 12.97 -35.23 -0.46 -7.23 16 5 C -0.11 -1.35 1.95 -90.54 -0.18 -1.53 16 6 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 7 C -0.11 -1.36 4.52 -26.61 -0.12 -1.48 16 8 C -0.12 -1.63 6.09 -26.65 -0.16 -1.79 16 9 C 0.05 0.88 4.85 -3.83 -0.02 0.86 16 10 N -0.54 -9.80 4.81 -234.66 -1.13 -10.93 16 11 C 0.06 1.33 5.21 -3.82 -0.02 1.31 16 12 C 0.02 0.53 4.22 -27.88 -0.12 0.41 16 13 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 17 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 C 0.06 0.82 4.02 -3.83 -0.02 0.80 16 22 H 0.07 0.62 6.41 -51.93 -0.33 0.29 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.65 6.33 -51.93 -0.33 0.32 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.65 6.51 -51.92 -0.34 0.31 16 28 H 0.38 3.66 7.55 45.56 0.34 4.01 16 29 H 0.06 0.69 6.46 -51.93 -0.34 0.35 16 30 H 0.06 0.65 6.50 -51.93 -0.34 0.31 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.88 5.81 -51.93 -0.30 1.58 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.02 0.38 8.08 -51.93 -0.42 -0.04 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.02 0.55 6.21 -51.93 -0.32 0.23 16 38 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.03 0.45 6.30 -51.93 -0.33 0.12 16 41 H 0.07 0.91 6.91 -51.93 -0.36 0.55 16 LS Contribution 307.12 15.07 4.63 4.63 Total: -1.00 -30.34 307.12 -8.16 -38.50 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.40 Total: 0.60 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -0.52 Total: -16.15 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: -0.39 Total: -36.96 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.46 Total: -7.23 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.34 -8.16 -38.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719682102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.031 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds