Wall clock time and date at job start Sun Mar 29 2020 22:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47076 * 2 1 4 4 O 1.42899 * 109.47207 * 240.00037 * 2 1 3 5 5 C 1.53004 * 109.47452 * 120.00200 * 2 1 3 6 6 H 1.09006 * 109.53516 * 64.89867 * 5 2 1 7 7 C 1.53121 * 109.50012 * 304.80569 * 5 2 1 8 8 C 1.53123 * 109.15709 * 182.40199 * 7 5 2 9 9 C 1.53036 * 109.27910 * 57.65405 * 8 7 5 10 10 N 1.46848 * 109.52325 * 300.81822 * 9 8 7 11 11 C 1.46901 * 111.00109 * 185.83663 * 10 9 8 12 12 C 1.53000 * 109.46769 * 45.79389 * 11 10 9 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99776 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00001 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00114 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99955 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46999 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46979 * 120.00420 * 17 15 13 20 20 H 1.48498 * 109.46942 * 240.00334 * 17 15 13 21 21 C 1.46849 * 111.19595 * 61.74468 * 10 9 8 22 22 H 1.08999 * 109.46739 * 299.99281 * 1 2 3 23 23 H 1.08993 * 109.47110 * 60.00053 * 1 2 3 24 24 H 1.09005 * 109.46665 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47455 * 179.97438 * 3 2 1 26 26 H 1.08994 * 109.47723 * 300.00387 * 3 2 1 27 27 H 1.09009 * 109.47141 * 60.00093 * 3 2 1 28 28 H 0.96701 * 114.00329 * 179.97438 * 4 2 1 29 29 H 1.09001 * 109.52047 * 302.30305 * 7 5 2 30 30 H 1.08999 * 109.52725 * 62.43525 * 7 5 2 31 31 H 1.09005 * 109.50464 * 177.59262 * 8 7 5 32 32 H 1.09001 * 109.50852 * 297.71080 * 8 7 5 33 33 H 1.08997 * 109.46297 * 180.80471 * 9 8 7 34 34 H 1.09006 * 109.46210 * 60.83495 * 9 8 7 35 35 H 1.09002 * 109.47401 * 285.79096 * 11 10 9 36 36 H 1.09001 * 109.46874 * 165.79109 * 11 10 9 37 37 H 1.09001 * 109.47194 * 299.99524 * 12 11 10 38 38 H 1.08992 * 109.47399 * 59.99697 * 12 11 10 39 39 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.46678 * 58.27111 * 21 10 9 41 41 H 1.09006 * 109.46228 * 178.25542 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2492 6 1 1.7508 -1.7714 1.2075 7 6 1.4338 -0.0733 2.4970 8 6 1.9955 -0.7617 3.7441 9 6 3.5220 -0.6529 3.7370 10 7 4.0535 -1.2878 2.5242 11 6 5.5218 -1.3251 2.5498 12 6 5.9959 -1.8033 3.9237 13 6 7.5022 -1.8422 3.9497 14 1 8.0650 -1.5541 3.0741 15 6 8.1618 -2.2444 5.0918 16 7 7.4764 -2.5947 6.1581 17 14 10.0289 -2.2932 5.1238 18 1 10.5582 -1.8551 3.8074 19 1 10.5296 -1.3839 6.1858 20 1 10.4830 -3.6790 5.4041 21 6 3.5653 -0.6137 1.3144 22 1 -0.3633 0.5137 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6766 1.9563 0.8901 28 1 2.9703 -0.7115 -1.2331 29 1 1.6906 0.9858 2.5187 30 1 0.3497 -0.1849 2.4753 31 1 1.6003 -0.2766 4.6367 32 1 1.7055 -1.8124 3.7417 33 1 3.9259 -1.1545 4.6163 34 1 3.8113 0.3979 3.7534 35 1 5.9141 -0.3265 2.3574 36 1 5.8813 -2.0108 1.7825 37 1 5.6365 -1.1177 4.6910 38 1 5.6037 -2.8018 4.1161 39 1 7.9404 -2.8773 6.9617 40 1 3.8544 0.4369 1.3422 41 1 4.0005 -1.0870 0.4342 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719682102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:28 Heat of formation + Delta-G solvation = -90.822022 kcal Electronic energy + Delta-G solvation = -18319.659206 eV Core-core repulsion = 15618.614042 eV Total energy + Delta-G solvation = -2701.045164 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.95601 -38.46707 -35.82236 -34.58076 -32.92950 -31.60345 -30.05244 -28.37306 -26.80308 -25.15774 -23.87405 -22.61020 -21.07915 -19.94393 -18.67703 -17.80318 -16.62227 -16.59104 -16.07318 -15.78990 -15.52878 -15.40925 -14.92642 -14.46268 -14.24726 -14.03473 -13.73631 -13.27438 -13.07945 -12.93561 -12.86596 -12.80321 -12.62231 -12.43980 -12.37238 -12.05779 -11.84497 -11.64850 -11.53877 -11.28972 -11.14036 -10.98290 -10.61477 -10.51400 -9.15103 -8.21917 -6.33281 1.39206 1.39766 1.52988 2.39034 3.02042 3.11627 3.35854 3.71274 3.80802 3.93160 4.11221 4.17078 4.23985 4.38360 4.46467 4.47432 4.60896 4.61993 4.74160 4.78368 4.84134 4.92862 4.96533 5.00308 5.02755 5.08908 5.13330 5.14698 5.23147 5.30477 5.43580 5.45700 5.53550 5.64745 5.77063 6.08217 6.32012 6.35099 6.82575 6.83374 7.36001 8.90296 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.043746 B = 0.004820 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.907179 B = 5808.276621 C = 6194.744643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.134 3.866 3 C -0.180 4.180 4 O -0.577 6.577 5 C -0.100 4.100 6 H 0.069 0.931 7 C -0.110 4.110 8 C -0.111 4.111 9 C 0.051 3.949 10 N -0.548 5.548 11 C 0.078 3.922 12 C 0.030 3.970 13 C -0.545 4.545 14 H 0.059 0.941 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.966 3.034 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.278 1.278 21 C 0.056 3.944 22 H 0.089 0.911 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.383 0.617 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.023 0.977 35 H 0.019 0.981 36 H 0.062 0.938 37 H 0.001 0.999 38 H -0.009 1.009 39 H 0.264 0.736 40 H 0.038 0.962 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.457 7.967 -10.600 18.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.093 3.907 3 C -0.238 4.238 4 O -0.385 6.385 5 C -0.119 4.119 6 H 0.087 0.913 7 C -0.147 4.147 8 C -0.149 4.149 9 C -0.077 4.077 10 N -0.272 5.272 11 C -0.050 4.050 12 C -0.007 4.007 13 C -0.584 4.584 14 H 0.077 0.923 15 C -0.195 4.195 16 N -0.571 5.571 17 Si 0.791 3.209 18 H -0.186 1.186 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.072 4.072 22 H 0.107 0.893 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.232 0.768 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.041 0.959 35 H 0.037 0.963 36 H 0.080 0.920 37 H 0.020 0.980 38 H 0.009 0.991 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.245 7.367 -10.558 19.201 hybrid contribution 2.141 0.495 0.623 2.284 sum -12.104 7.862 -9.934 17.522 Atomic orbital electron populations 1.21837 0.91813 1.02743 1.03252 1.21224 0.95402 0.90731 0.83303 1.22581 1.01647 0.96270 1.03254 1.86497 1.27729 1.79927 1.44333 1.21779 0.93748 1.00613 0.95759 0.91294 1.21723 1.00889 0.99493 0.92597 1.21583 0.92874 1.01397 0.99065 1.22142 0.96470 0.95914 0.93139 1.61954 1.08456 1.54137 1.02686 1.21975 0.85938 0.98119 0.98931 1.19059 0.94707 0.94845 0.92077 1.21651 0.93059 1.44836 0.98813 0.92266 1.25948 1.03844 0.94631 0.95122 1.70104 1.37539 1.45895 1.03572 0.85382 0.79133 0.77915 0.78507 1.18596 1.20276 1.20325 1.22256 0.95809 0.96477 0.92659 0.89260 0.91746 0.92485 0.92416 0.91438 0.90571 0.76777 0.91175 0.89347 0.90176 0.92105 0.92592 0.95921 0.96265 0.91993 0.98046 0.99052 0.92722 0.94441 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.36 71.98 0.60 -1.75 16 2 C 0.13 2.64 0.93 -10.79 -0.01 2.63 16 3 C -0.18 -3.12 8.08 71.98 0.58 -2.54 16 4 O -0.58 -12.82 12.97 -148.98 -1.93 -14.76 16 5 C -0.10 -2.33 1.95 -10.74 -0.02 -2.35 16 6 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 7 C -0.11 -2.32 4.52 30.68 0.14 -2.18 16 8 C -0.11 -2.99 6.09 30.65 0.19 -2.81 16 9 C 0.05 1.83 4.85 86.33 0.42 2.25 16 10 N -0.55 -20.16 4.81 -896.34 -4.31 -24.47 16 11 C 0.08 3.38 5.21 86.30 0.45 3.83 16 12 C 0.03 1.64 4.22 29.85 0.13 1.77 16 13 C -0.55 -31.49 9.11 25.60 0.23 -31.25 16 14 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 15 C 0.00 0.15 5.46 84.66 0.46 0.61 16 16 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 17 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 18 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 21 C 0.06 1.56 4.02 86.33 0.35 1.91 16 22 H 0.09 1.19 6.41 -2.39 -0.02 1.17 16 23 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 25 H 0.06 1.05 6.33 -2.38 -0.02 1.04 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.08 1.20 6.51 -2.38 -0.02 1.18 16 28 H 0.38 6.88 7.55 -74.06 -0.56 6.32 16 29 H 0.07 1.38 6.46 -2.39 -0.02 1.37 16 30 H 0.09 1.49 6.50 -2.39 -0.02 1.47 16 31 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 2.39 5.81 -2.39 -0.01 2.38 16 34 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.02 0.82 8.08 -2.39 -0.02 0.80 16 36 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.00 0.08 6.21 -2.39 -0.01 0.06 16 38 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 39 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 40 H 0.04 1.02 6.30 -2.39 -0.02 1.01 16 41 H 0.07 1.92 6.91 -2.38 -0.02 1.90 16 Total: -1.00 -65.97 307.12 0.02 -65.95 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.44 Total: 13.44 kcal Atomic # 6 Polarization: -33.40 SS G_CDS: 3.51 Total: -29.89 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -4.02 Total: -81.26 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -1.93 Total: -14.76 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -65.97 0.02 -65.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719682102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.876 kcal (2) G-P(sol) polarization free energy of solvation -65.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds