Wall clock time and date at job start Sun Mar 29 2020 22:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.46846 * 2 1 4 4 O 1.42909 * 109.46563 * 240.00253 * 2 1 3 5 5 C 1.52995 * 109.47371 * 120.00490 * 2 1 3 6 6 H 1.09000 * 109.50059 * 300.07350 * 5 2 1 7 7 C 1.53114 * 109.53668 * 60.17302 * 5 2 1 8 8 C 1.53123 * 109.16198 * 177.61433 * 7 5 2 9 9 C 1.53035 * 109.27774 * 302.35270 * 8 7 5 10 10 N 1.46846 * 109.52744 * 59.17321 * 9 8 7 11 11 C 1.46904 * 110.99942 * 174.16069 * 10 9 8 12 12 C 1.52998 * 109.47283 * 293.95697 * 11 10 9 13 13 C 1.50697 * 109.47047 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00325 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00147 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99869 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00307 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46686 * 60.00222 * 17 15 13 19 19 H 1.48500 * 109.47181 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47083 * 300.00264 * 17 15 13 21 21 C 1.46844 * 111.19783 * 298.26158 * 10 9 8 22 22 H 1.09000 * 109.46507 * 299.99627 * 1 2 3 23 23 H 1.08996 * 109.47116 * 59.99846 * 1 2 3 24 24 H 1.09000 * 109.46779 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46778 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47294 * 300.00479 * 3 2 1 27 27 H 1.08993 * 109.47414 * 60.00540 * 3 2 1 28 28 H 0.96700 * 113.99270 * 179.97438 * 4 2 1 29 29 H 1.09000 * 109.52528 * 297.52073 * 7 5 2 30 30 H 1.08998 * 109.52620 * 57.71277 * 7 5 2 31 31 H 1.08995 * 109.51026 * 182.40543 * 8 7 5 32 32 H 1.09011 * 109.49940 * 62.28508 * 8 7 5 33 33 H 1.09008 * 109.45841 * 299.15478 * 9 8 7 34 34 H 1.09003 * 109.46290 * 179.19461 * 9 8 7 35 35 H 1.09003 * 109.46771 * 53.95568 * 11 10 9 36 36 H 1.08996 * 109.47080 * 173.95113 * 11 10 9 37 37 H 1.09003 * 109.47112 * 299.99663 * 12 11 10 38 38 H 1.08995 * 109.47053 * 59.99901 * 12 11 10 39 39 H 0.96999 * 119.99984 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.46271 * 181.75698 * 21 10 9 41 41 H 1.09008 * 109.46154 * 301.73497 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1669 5 6 2.0401 -0.7213 1.2491 6 1 1.6760 -0.2087 2.1395 7 6 1.5342 -2.1664 1.2483 8 6 2.0980 -2.8970 2.4702 9 6 3.6267 -2.8343 2.4355 10 7 4.0605 -1.4314 2.4383 11 6 5.5224 -1.3326 2.5450 12 6 5.9704 -1.8549 3.9115 13 6 7.4700 -1.7542 4.0207 14 1 8.0460 -1.3570 3.1980 15 6 8.1068 -2.1681 5.1714 16 7 7.4055 -2.6514 6.1736 17 14 9.9658 -2.0440 5.3066 18 1 10.3791 -0.6254 5.1583 19 1 10.4007 -2.5508 6.6329 20 1 10.5954 -2.8575 4.2356 21 6 3.5705 -0.7217 1.2498 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6768 1.9563 0.8900 28 1 2.9703 -0.7115 -1.2332 29 1 0.4451 -2.1711 1.2916 30 1 1.8657 -2.6680 0.3392 31 1 1.7760 -3.9382 2.4525 32 1 1.7347 -2.4186 3.3799 33 1 3.9898 -3.3250 1.5325 34 1 4.0310 -3.3412 3.3117 35 1 5.9851 -1.9289 1.7586 36 1 5.8250 -0.2911 2.4370 37 1 5.5076 -1.2587 4.6980 38 1 5.6678 -2.8964 4.0195 39 1 7.8535 -2.9430 6.9830 40 1 3.9339 0.3058 1.2648 41 1 3.9338 -1.2224 0.3523 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719682104.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:31 Heat of formation + Delta-G solvation = -73.642424 kcal Electronic energy + Delta-G solvation = -18278.257705 eV Core-core repulsion = 15577.957504 eV Total energy + Delta-G solvation = -2700.300201 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.80987 -37.17133 -34.02894 -32.74889 -32.08107 -30.00817 -28.87785 -27.56033 -24.91163 -23.47356 -22.56036 -20.84915 -19.75049 -19.40008 -16.80707 -16.34372 -15.40125 -15.17834 -14.54967 -14.40247 -14.37567 -13.71128 -13.61867 -13.45978 -12.73996 -12.44841 -12.29065 -12.23569 -12.11318 -11.88576 -11.72059 -11.20613 -11.10816 -10.93310 -10.84477 -10.60553 -10.58700 -10.46052 -9.99161 -9.85231 -9.66665 -9.24232 -9.11905 -8.32087 -7.69222 -5.99008 -4.01558 3.33497 3.37948 3.40153 4.14850 4.32709 4.50802 4.68790 4.80349 4.93425 5.11819 5.23117 5.35567 5.37748 5.47489 5.53620 5.59228 5.66154 5.71816 5.83929 5.87157 5.95555 6.00540 6.02674 6.06318 6.13820 6.21440 6.31714 6.32490 6.48175 6.57099 6.63958 6.97551 7.53156 7.59577 7.62342 7.81466 7.91085 8.09400 8.44053 9.05486 9.61979 11.12315 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.042154 B = 0.004789 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.075916 B = 5845.122720 C = 6205.500889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.131 3.869 3 C -0.180 4.180 4 O -0.562 6.562 5 C -0.108 4.108 6 H 0.084 0.916 7 C -0.110 4.110 8 C -0.117 4.117 9 C 0.054 3.946 10 N -0.536 5.536 11 C 0.063 3.937 12 C 0.028 3.972 13 C -0.523 4.523 14 H 0.053 0.947 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.057 3.943 22 H 0.069 0.931 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.374 0.626 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.086 0.914 35 H 0.018 0.982 36 H 0.059 0.941 37 H 0.024 0.976 38 H 0.017 0.983 39 H 0.261 0.739 40 H 0.072 0.928 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.815 4.099 -11.380 17.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.090 3.910 3 C -0.238 4.238 4 O -0.369 6.369 5 C -0.127 4.127 6 H 0.103 0.897 7 C -0.147 4.147 8 C -0.155 4.155 9 C -0.074 4.074 10 N -0.260 5.260 11 C -0.063 4.063 12 C -0.009 4.009 13 C -0.562 4.562 14 H 0.071 0.929 15 C -0.142 4.142 16 N -0.532 5.532 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.072 4.072 22 H 0.087 0.913 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.222 0.778 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.104 0.896 35 H 0.037 0.963 36 H 0.078 0.922 37 H 0.043 0.957 38 H 0.035 0.965 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -13.631 4.189 -10.890 17.943 hybrid contribution 2.096 -0.243 -0.396 2.147 sum -11.535 3.946 -11.286 16.613 Atomic orbital electron populations 1.21773 0.92922 1.02808 1.02040 1.21211 0.94585 0.90475 0.84716 1.22538 1.01960 0.96783 1.02509 1.86498 1.26725 1.79616 1.44021 1.21832 0.95769 0.96962 0.98167 0.89718 1.21574 0.99719 0.94893 0.98524 1.21614 0.95662 0.99709 0.98533 1.22110 0.94702 0.89490 1.01079 1.61988 1.13608 1.13009 1.37407 1.22324 0.83460 1.00036 1.00508 1.19089 0.95186 0.96350 0.90257 1.21158 0.92317 1.42064 1.00649 0.92904 1.24986 0.98173 0.95285 0.95794 1.69964 1.35432 1.42535 1.05304 0.86661 0.85785 0.78414 0.77148 1.20237 1.21259 1.20312 1.22140 0.94134 0.98965 0.91933 0.91252 0.92277 0.91647 0.91918 0.92174 0.91445 0.77816 0.92159 0.91921 0.92032 0.91303 0.95817 0.89610 0.96348 0.92235 0.95748 0.96473 0.92946 0.91009 0.95858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.50 37.16 0.32 -1.03 16 2 C 0.13 1.42 0.84 -90.62 -0.08 1.34 16 3 C -0.18 -1.78 8.46 37.16 0.31 -1.46 16 4 O -0.56 -6.59 12.22 -35.23 -0.43 -7.02 16 5 C -0.11 -1.35 1.77 -90.55 -0.16 -1.51 16 6 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 7 C -0.11 -1.37 4.74 -26.61 -0.13 -1.50 16 8 C -0.12 -1.65 6.09 -26.65 -0.16 -1.82 16 9 C 0.05 0.93 5.29 -3.84 -0.02 0.91 16 10 N -0.54 -9.75 4.65 -234.67 -1.09 -10.84 16 11 C 0.06 1.35 4.90 -3.82 -0.02 1.33 16 12 C 0.03 0.75 4.91 -27.89 -0.14 0.61 16 13 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 17 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 C 0.06 0.82 4.08 -3.84 -0.02 0.80 16 22 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.65 6.49 -51.93 -0.34 0.31 16 25 H 0.06 0.62 6.45 -51.93 -0.34 0.29 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.37 3.70 7.32 45.56 0.33 4.04 16 29 H 0.06 0.68 6.58 -51.93 -0.34 0.34 16 30 H 0.06 0.82 7.62 -51.93 -0.40 0.43 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.01 8.14 -51.92 -0.42 0.58 16 33 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 34 H 0.09 1.67 6.22 -51.93 -0.32 1.35 16 35 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 36 H 0.06 1.24 7.98 -51.93 -0.41 0.83 16 37 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.02 0.47 6.44 -51.93 -0.33 0.14 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.07 1.01 6.35 -51.93 -0.33 0.68 16 41 H 0.02 0.33 6.74 -51.92 -0.35 -0.02 16 LS Contribution 310.81 15.07 4.68 4.68 Total: -1.00 -30.34 310.81 -8.22 -38.55 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.60 Total: 0.09 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -0.50 Total: -15.91 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: -0.36 Total: -37.07 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.43 Total: -7.02 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.34 -8.22 -38.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719682104.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.088 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds