Wall clock time and date at job start Sun Mar 29 2020 22:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.46846 * 2 1 4 4 O 1.42909 * 109.46563 * 240.00253 * 2 1 3 5 5 C 1.52995 * 109.47371 * 120.00490 * 2 1 3 6 6 H 1.09000 * 109.50059 * 300.07350 * 5 2 1 7 7 C 1.53114 * 109.53668 * 60.17302 * 5 2 1 8 8 C 1.53123 * 109.16198 * 177.61433 * 7 5 2 9 9 C 1.53035 * 109.27774 * 302.35270 * 8 7 5 10 10 N 1.46846 * 109.52744 * 59.17321 * 9 8 7 11 11 C 1.46904 * 110.99942 * 174.16069 * 10 9 8 12 12 C 1.52998 * 109.47283 * 293.95697 * 11 10 9 13 13 C 1.50697 * 109.47047 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00325 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00147 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99869 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00307 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46686 * 60.00222 * 17 15 13 19 19 H 1.48500 * 109.47181 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47083 * 300.00264 * 17 15 13 21 21 C 1.46844 * 111.19783 * 298.26158 * 10 9 8 22 22 H 1.09000 * 109.46507 * 299.99627 * 1 2 3 23 23 H 1.08996 * 109.47116 * 59.99846 * 1 2 3 24 24 H 1.09000 * 109.46779 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46778 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47294 * 300.00479 * 3 2 1 27 27 H 1.08993 * 109.47414 * 60.00540 * 3 2 1 28 28 H 0.96700 * 113.99270 * 179.97438 * 4 2 1 29 29 H 1.09000 * 109.52528 * 297.52073 * 7 5 2 30 30 H 1.08998 * 109.52620 * 57.71277 * 7 5 2 31 31 H 1.08995 * 109.51026 * 182.40543 * 8 7 5 32 32 H 1.09011 * 109.49940 * 62.28508 * 8 7 5 33 33 H 1.09008 * 109.45841 * 299.15478 * 9 8 7 34 34 H 1.09003 * 109.46290 * 179.19461 * 9 8 7 35 35 H 1.09003 * 109.46771 * 53.95568 * 11 10 9 36 36 H 1.08996 * 109.47080 * 173.95113 * 11 10 9 37 37 H 1.09003 * 109.47112 * 299.99663 * 12 11 10 38 38 H 1.08995 * 109.47053 * 59.99901 * 12 11 10 39 39 H 0.96999 * 119.99984 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.46271 * 181.75698 * 21 10 9 41 41 H 1.09008 * 109.46154 * 301.73497 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1669 5 6 2.0401 -0.7213 1.2491 6 1 1.6760 -0.2087 2.1395 7 6 1.5342 -2.1664 1.2483 8 6 2.0980 -2.8970 2.4702 9 6 3.6267 -2.8343 2.4355 10 7 4.0605 -1.4314 2.4383 11 6 5.5224 -1.3326 2.5450 12 6 5.9704 -1.8549 3.9115 13 6 7.4700 -1.7542 4.0207 14 1 8.0460 -1.3570 3.1980 15 6 8.1068 -2.1681 5.1714 16 7 7.4055 -2.6514 6.1736 17 14 9.9658 -2.0440 5.3066 18 1 10.3791 -0.6254 5.1583 19 1 10.4007 -2.5508 6.6329 20 1 10.5954 -2.8575 4.2356 21 6 3.5705 -0.7217 1.2498 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6768 1.9563 0.8900 28 1 2.9703 -0.7115 -1.2332 29 1 0.4451 -2.1711 1.2916 30 1 1.8657 -2.6680 0.3392 31 1 1.7760 -3.9382 2.4525 32 1 1.7347 -2.4186 3.3799 33 1 3.9898 -3.3250 1.5325 34 1 4.0310 -3.3412 3.3117 35 1 5.9851 -1.9289 1.7586 36 1 5.8250 -0.2911 2.4370 37 1 5.5076 -1.2587 4.6980 38 1 5.6678 -2.8964 4.0195 39 1 7.8535 -2.9430 6.9830 40 1 3.9339 0.3058 1.2648 41 1 3.9338 -1.2224 0.3523 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719682104.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:30 Heat of formation + Delta-G solvation = -94.462243 kcal Electronic energy + Delta-G solvation = -18279.160520 eV Core-core repulsion = 15577.957504 eV Total energy + Delta-G solvation = -2701.203016 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.89268 -38.38402 -35.68437 -34.36803 -33.21830 -31.49738 -30.31994 -28.44900 -26.69504 -24.81428 -23.91940 -22.28980 -21.11405 -20.47887 -18.62343 -17.65199 -16.63372 -16.60846 -16.21224 -15.74192 -15.46972 -15.00162 -14.84807 -14.65630 -14.22428 -14.09023 -13.63819 -13.25243 -13.13283 -12.98657 -12.82951 -12.78444 -12.63001 -12.44485 -12.25166 -11.97620 -11.83489 -11.73866 -11.53841 -11.45002 -11.26044 -10.85513 -10.58896 -10.49703 -9.16637 -8.20153 -6.31867 1.39898 1.43163 1.51119 2.39994 3.01617 3.13094 3.36548 3.71877 3.80346 3.95999 4.12467 4.16051 4.25980 4.38435 4.42922 4.49675 4.61750 4.62086 4.76790 4.78984 4.89651 4.93785 4.97035 5.01392 5.05682 5.08974 5.09702 5.20602 5.21984 5.31626 5.43471 5.47516 5.52968 5.66768 5.78632 6.11062 6.33279 6.35201 6.81520 6.85125 7.37307 8.91814 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.042154 B = 0.004789 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.075916 B = 5845.122720 C = 6205.500889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.135 3.865 3 C -0.179 4.179 4 O -0.572 6.572 5 C -0.102 4.102 6 H 0.080 0.920 7 C -0.104 4.104 8 C -0.111 4.111 9 C 0.054 3.946 10 N -0.548 5.548 11 C 0.080 3.920 12 C 0.037 3.963 13 C -0.547 4.547 14 H 0.060 0.940 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.966 3.034 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.267 1.267 21 C 0.057 3.943 22 H 0.081 0.919 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.380 0.620 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.025 0.975 34 H 0.052 0.948 35 H 0.018 0.982 36 H 0.064 0.936 37 H -0.009 1.009 38 H -0.007 1.007 39 H 0.264 0.736 40 H 0.077 0.923 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.019 4.836 -12.735 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.094 3.906 3 C -0.236 4.236 4 O -0.380 6.380 5 C -0.121 4.121 6 H 0.098 0.902 7 C -0.141 4.141 8 C -0.149 4.149 9 C -0.074 4.074 10 N -0.272 5.272 11 C -0.048 4.048 12 C 0.000 4.000 13 C -0.585 4.585 14 H 0.078 0.922 15 C -0.196 4.196 16 N -0.572 5.572 17 Si 0.791 3.209 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.192 1.192 21 C -0.071 4.071 22 H 0.100 0.900 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.229 0.771 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.036 0.964 36 H 0.082 0.918 37 H 0.009 0.991 38 H 0.011 0.989 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -13.847 4.932 -12.266 19.145 hybrid contribution 2.120 -0.487 0.034 2.176 sum -11.727 4.445 -12.233 17.519 Atomic orbital electron populations 1.21807 0.91861 1.02996 1.02949 1.21222 0.95343 0.90596 0.83461 1.22521 1.01774 0.96198 1.03145 1.86492 1.27461 1.79803 1.44231 1.21793 0.93973 0.97232 0.99074 0.90185 1.21539 1.00783 0.94506 0.97273 1.21578 0.93017 1.01064 0.99223 1.22086 0.96986 0.88763 0.99519 1.61911 1.11443 1.13883 1.39970 1.21959 0.85780 0.99740 0.97310 1.18911 0.94434 0.94493 0.92202 1.21600 0.93535 1.42206 1.01150 0.92193 1.25963 1.03721 0.94603 0.95284 1.70109 1.37748 1.43349 1.05952 0.85486 0.79060 0.78979 0.77425 1.19062 1.20781 1.19201 1.22233 0.95690 0.98669 0.90491 0.90045 0.91753 0.91814 0.92216 0.91412 0.90961 0.77080 0.90214 0.92129 0.90448 0.91976 0.95656 0.92972 0.96421 0.91774 0.99054 0.98870 0.92750 0.90484 0.94990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.50 71.99 0.61 -1.71 16 2 C 0.13 2.60 0.84 -10.79 -0.01 2.59 16 3 C -0.18 -3.11 8.46 71.98 0.61 -2.50 16 4 O -0.57 -12.10 12.22 -148.98 -1.82 -13.92 16 5 C -0.10 -2.34 1.77 -10.75 -0.02 -2.36 16 6 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 7 C -0.10 -2.39 4.74 30.67 0.15 -2.24 16 8 C -0.11 -3.04 6.09 30.65 0.19 -2.85 16 9 C 0.05 1.91 5.29 86.33 0.46 2.36 16 10 N -0.55 -20.03 4.65 -896.35 -4.17 -24.20 16 11 C 0.08 3.44 4.90 86.30 0.42 3.86 16 12 C 0.04 2.02 4.91 29.85 0.15 2.16 16 13 C -0.55 -31.61 9.11 25.60 0.23 -31.38 16 14 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 15 C 0.00 0.14 5.46 84.65 0.46 0.60 16 16 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 17 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 C 0.06 1.57 4.08 86.32 0.35 1.92 16 22 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.06 1.09 6.49 -2.39 -0.02 1.07 16 25 H 0.06 1.07 6.45 -2.39 -0.02 1.05 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.38 6.74 7.32 -74.06 -0.54 6.20 16 29 H 0.08 1.57 6.58 -2.39 -0.02 1.56 16 30 H 0.06 1.45 7.62 -2.39 -0.02 1.44 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.03 0.86 8.14 -2.38 -0.02 0.85 16 34 H 0.05 2.15 6.22 -2.39 -0.01 2.14 16 35 H 0.02 0.76 8.12 -2.39 -0.02 0.74 16 36 H 0.06 2.68 7.98 -2.39 -0.02 2.66 16 37 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 38 H -0.01 -0.41 6.44 -2.39 -0.02 -0.42 16 39 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.08 2.06 6.35 -2.39 -0.02 2.04 16 41 H 0.03 0.84 6.74 -2.38 -0.02 0.83 16 Total: -1.00 -65.53 310.81 0.36 -65.17 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.45 Total: 13.20 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 3.60 Total: -29.55 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -3.89 Total: -81.43 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -1.82 Total: -13.92 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -65.53 0.36 -65.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719682104.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.296 kcal (2) G-P(sol) polarization free energy of solvation -65.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds