Wall clock time and date at job start Sun Mar 29 2020 22:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47013 * 2 1 4 4 H 1.09000 * 115.55103 * 29.28464 * 3 2 1 5 5 C 1.52998 * 117.50360 * 243.61206 * 3 2 1 6 6 C 1.52999 * 117.49989 * 174.98509 * 3 2 1 7 7 H 1.09006 * 117.49896 * 0.02562 * 6 3 2 8 8 C 1.52996 * 117.50315 * 214.98393 * 6 3 2 9 9 N 1.46902 * 109.47184 * 174.84772 * 8 6 3 10 10 C 1.46908 * 110.99708 * 199.58227 * 9 8 6 11 11 C 1.50697 * 109.47395 * 75.44370 * 10 9 8 12 12 H 1.08006 * 119.99577 * 355.08817 * 11 10 9 13 13 C 1.37869 * 119.99906 * 175.08563 * 11 10 9 14 14 N 1.31519 * 120.00263 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99887 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46980 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47247 * 119.99864 * 15 13 11 18 18 H 1.48501 * 109.46942 * 240.00000 * 15 13 11 19 19 C 1.46899 * 111.00247 * 75.62735 * 9 8 6 20 20 C 1.52997 * 109.47050 * 190.00191 * 19 9 8 21 21 O 1.42892 * 109.47564 * 64.99831 * 20 19 9 22 22 C 1.42900 * 114.00302 * 180.02562 * 21 20 19 23 23 H 1.08995 * 109.47623 * 59.99866 * 1 2 3 24 24 H 1.09007 * 109.46860 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47232 * 299.98981 * 1 2 3 26 26 H 1.09007 * 109.47003 * 240.00350 * 2 1 3 27 27 H 1.08991 * 109.47409 * 120.00603 * 2 1 3 28 28 H 1.09006 * 117.49592 * 359.97438 * 5 3 2 29 29 H 1.08996 * 117.50268 * 145.00227 * 5 3 2 30 30 H 1.08999 * 109.46803 * 294.84535 * 8 6 3 31 31 H 1.08999 * 109.47004 * 54.84719 * 8 6 3 32 32 H 1.08997 * 109.46484 * 195.44741 * 10 9 8 33 33 H 1.09003 * 109.46659 * 315.44337 * 10 9 8 34 34 H 0.96996 * 119.99528 * 180.02562 * 14 13 11 35 35 H 1.09005 * 109.46839 * 309.99827 * 19 9 8 36 36 H 1.08997 * 109.47215 * 70.00094 * 19 9 8 37 37 H 1.09002 * 109.47208 * 185.00043 * 20 19 9 38 38 H 1.09000 * 109.47138 * 304.99407 * 20 19 9 39 39 H 1.09006 * 109.47252 * 180.02562 * 22 21 20 40 40 H 1.08998 * 109.47054 * 299.99535 * 22 21 20 41 41 H 1.08992 * 109.47292 * 59.99936 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3880 2.1716 0.4810 5 6 2.8441 1.9076 -1.2157 6 6 3.5500 1.6579 0.1186 7 1 4.1803 0.7719 0.1963 8 6 4.0298 2.8804 0.9036 9 7 5.4945 2.8492 1.0114 10 6 5.9598 3.7047 2.1114 11 6 5.6946 3.0196 3.4272 12 1 5.1564 2.0835 3.4498 13 6 6.1390 3.5879 4.6021 14 7 6.7947 4.7276 4.5745 15 14 5.8109 2.7384 6.2331 16 1 5.0603 1.4796 5.9934 17 1 7.1019 2.4267 6.8974 18 1 5.0090 3.6339 7.1051 19 6 6.1242 3.2354 -0.2584 20 6 7.6265 2.9541 -0.1890 21 8 7.8427 1.5465 -0.0726 22 6 9.2204 1.1741 0.0006 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8898 28 1 3.0102 1.1857 -2.0154 29 1 2.7212 2.9426 -1.5344 30 1 3.7229 3.7886 0.3849 31 1 3.5917 2.8662 1.9016 32 1 7.0295 3.8843 2.0043 33 1 5.4269 4.6552 2.0827 34 1 7.1077 5.1272 5.4011 35 1 5.6839 2.6593 -1.0723 36 1 5.9614 4.2984 -0.4361 37 1 8.1073 3.3218 -1.0955 38 1 8.0511 3.4599 0.6782 39 1 9.2997 0.0903 0.0869 40 1 9.7345 1.5048 -0.9018 41 1 9.6777 1.6428 0.8718 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723125105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:57 Heat of formation + Delta-G solvation = -30.593825 kcal Electronic energy + Delta-G solvation = -17871.183442 eV Core-core repulsion = 15172.749969 eV Total energy + Delta-G solvation = -2698.433473 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.34393 -37.34362 -35.63284 -32.55802 -31.90518 -29.43352 -27.34347 -25.97159 -24.51965 -23.57145 -22.51428 -20.60696 -19.96300 -19.51874 -16.52462 -15.90610 -15.48054 -14.89410 -14.81939 -14.58513 -14.33632 -13.99666 -13.52070 -13.22290 -12.81997 -12.50446 -12.01442 -11.93890 -11.69484 -11.44380 -11.32594 -11.14695 -11.04261 -10.92264 -10.80410 -10.59738 -10.49011 -10.25353 -9.85962 -9.38971 -9.26926 -9.10681 -8.99398 -8.35703 -7.12416 -5.97151 -3.96632 3.34455 3.41772 3.48024 4.12784 4.35066 4.48132 4.73072 5.05702 5.18783 5.30122 5.36784 5.38842 5.51824 5.56128 5.63514 5.71398 5.83299 5.87546 5.88860 5.93840 6.01495 6.01796 6.03873 6.13400 6.20855 6.21830 6.26871 6.39841 6.48688 6.51075 6.62550 6.90115 7.30085 7.36179 7.73250 7.91574 8.19316 8.31509 8.63490 9.11863 9.66934 11.13709 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.013421 B = 0.007731 C = 0.005569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.800264 B = 3620.721733 C = 5026.301527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.155 4.155 4 H 0.099 0.901 5 C -0.186 4.186 6 C -0.124 4.124 7 H 0.111 0.889 8 C 0.093 3.907 9 N -0.523 5.523 10 C 0.188 3.812 11 C -0.495 4.495 12 H 0.064 0.936 13 C 0.052 3.948 14 N -0.903 5.903 15 Si 0.895 3.105 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.286 1.286 19 C 0.059 3.941 20 C 0.066 3.934 21 O -0.370 6.370 22 C 0.033 3.967 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.018 0.982 31 H 0.084 0.916 32 H 0.035 0.965 33 H -0.014 1.014 34 H 0.259 0.741 35 H 0.070 0.930 36 H 0.033 0.967 37 H 0.036 0.964 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.029 0.971 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.467 -5.551 -11.041 13.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.129 4.129 3 C -0.174 4.174 4 H 0.117 0.883 5 C -0.223 4.223 6 C -0.143 4.143 7 H 0.129 0.871 8 C -0.035 4.035 9 N -0.248 5.248 10 C 0.063 3.937 11 C -0.534 4.534 12 H 0.082 0.918 13 C -0.148 4.148 14 N -0.543 5.543 15 Si 0.723 3.277 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.212 1.212 19 C -0.070 4.070 20 C -0.011 4.011 21 O -0.288 6.288 22 C -0.064 4.064 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.037 0.963 31 H 0.103 0.897 32 H 0.053 0.947 33 H 0.004 0.996 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.047 0.953 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.386 -6.032 -10.806 13.130 hybrid contribution 0.009 0.759 0.728 1.051 sum -4.377 -5.273 -10.078 12.188 Atomic orbital electron populations 1.21743 0.95993 1.01076 1.01687 1.21083 0.95385 0.94651 1.01821 1.22418 0.94823 0.97487 1.02676 0.88259 1.23177 1.05858 1.01373 0.91900 1.22545 0.93039 1.01331 0.97339 0.87104 1.21547 0.89428 0.92841 0.99678 1.62014 1.04289 1.55366 1.03116 1.19827 0.95882 0.89917 0.88047 1.21216 1.34846 1.07179 0.90148 0.91779 1.24978 0.95489 0.95083 0.99232 1.69968 1.38920 1.18130 1.27328 0.86478 0.77898 0.79637 0.83657 1.19607 1.21125 1.21244 1.22016 0.93252 0.97340 0.94370 1.22640 0.96807 0.82410 0.99209 1.87980 1.23281 1.22930 1.94637 1.22645 0.83951 1.00665 0.99160 0.92951 0.93125 0.92723 0.92254 0.91585 0.89560 0.89622 0.96339 0.89730 0.94680 0.99621 0.93142 0.91180 0.94913 0.94554 0.92289 0.90325 0.95255 0.94202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.87 37.16 0.37 -1.18 16 2 C -0.09 -1.13 6.22 -26.73 -0.17 -1.30 16 3 C -0.16 -2.18 5.46 -90.62 -0.49 -2.67 16 4 H 0.10 1.40 8.07 -51.93 -0.42 0.98 16 5 C -0.19 -2.57 9.82 -26.73 -0.26 -2.83 16 6 C -0.12 -2.06 4.91 -90.62 -0.45 -2.50 16 7 H 0.11 2.01 8.14 -51.93 -0.42 1.59 16 8 C 0.09 1.84 5.09 -3.83 -0.02 1.82 16 9 N -0.52 -11.55 4.31 -236.07 -1.02 -12.56 16 10 C 0.19 4.93 4.59 -4.97 -0.02 4.91 16 11 C -0.50 -14.11 8.52 -34.44 -0.29 -14.41 16 12 H 0.06 1.84 7.75 -52.48 -0.41 1.44 16 13 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 14 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 15 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 C 0.06 1.11 5.17 -3.83 -0.02 1.09 16 20 C 0.07 1.21 6.02 37.16 0.22 1.43 16 21 O -0.37 -7.09 10.65 -35.23 -0.38 -7.46 16 22 C 0.03 0.49 11.01 101.05 1.11 1.61 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.69 7.88 -51.93 -0.41 0.28 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.09 1.10 8.03 -51.93 -0.42 0.68 16 29 H 0.09 1.15 8.03 -51.93 -0.42 0.73 16 30 H 0.02 0.35 7.73 -51.93 -0.40 -0.05 16 31 H 0.08 1.84 7.24 -51.93 -0.38 1.46 16 32 H 0.04 0.98 5.82 -51.93 -0.30 0.67 16 33 H -0.01 -0.39 8.00 -51.93 -0.42 -0.80 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.07 1.22 7.44 -51.93 -0.39 0.84 16 36 H 0.03 0.60 8.12 -51.93 -0.42 0.17 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 1.20 6.08 -51.93 -0.32 0.89 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 333.01 15.07 5.02 5.02 Total: -1.00 -30.32 333.01 -8.40 -38.73 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -7.63 Total: -1.83 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -0.12 Total: -12.63 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: -0.28 Total: -38.83 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.38 Total: -7.46 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.32 -8.40 -38.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723125105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.132 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds