Wall clock time and date at job start Sun Mar 29 2020 22:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47013 * 2 1 4 4 H 1.09000 * 115.55103 * 29.28464 * 3 2 1 5 5 C 1.52998 * 117.50360 * 243.61206 * 3 2 1 6 6 C 1.52999 * 117.49989 * 174.98509 * 3 2 1 7 7 H 1.09006 * 117.49896 * 0.02562 * 6 3 2 8 8 C 1.52996 * 117.50315 * 214.98393 * 6 3 2 9 9 N 1.46902 * 109.47184 * 174.84772 * 8 6 3 10 10 C 1.46908 * 110.99708 * 199.58227 * 9 8 6 11 11 C 1.50697 * 109.47395 * 75.44370 * 10 9 8 12 12 H 1.08006 * 119.99577 * 355.08817 * 11 10 9 13 13 C 1.37869 * 119.99906 * 175.08563 * 11 10 9 14 14 N 1.31519 * 120.00263 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99887 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46980 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47247 * 119.99864 * 15 13 11 18 18 H 1.48501 * 109.46942 * 240.00000 * 15 13 11 19 19 C 1.46899 * 111.00247 * 75.62735 * 9 8 6 20 20 C 1.52997 * 109.47050 * 190.00191 * 19 9 8 21 21 O 1.42892 * 109.47564 * 64.99831 * 20 19 9 22 22 C 1.42900 * 114.00302 * 180.02562 * 21 20 19 23 23 H 1.08995 * 109.47623 * 59.99866 * 1 2 3 24 24 H 1.09007 * 109.46860 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47232 * 299.98981 * 1 2 3 26 26 H 1.09007 * 109.47003 * 240.00350 * 2 1 3 27 27 H 1.08991 * 109.47409 * 120.00603 * 2 1 3 28 28 H 1.09006 * 117.49592 * 359.97438 * 5 3 2 29 29 H 1.08996 * 117.50268 * 145.00227 * 5 3 2 30 30 H 1.08999 * 109.46803 * 294.84535 * 8 6 3 31 31 H 1.08999 * 109.47004 * 54.84719 * 8 6 3 32 32 H 1.08997 * 109.46484 * 195.44741 * 10 9 8 33 33 H 1.09003 * 109.46659 * 315.44337 * 10 9 8 34 34 H 0.96996 * 119.99528 * 180.02562 * 14 13 11 35 35 H 1.09005 * 109.46839 * 309.99827 * 19 9 8 36 36 H 1.08997 * 109.47215 * 70.00094 * 19 9 8 37 37 H 1.09002 * 109.47208 * 185.00043 * 20 19 9 38 38 H 1.09000 * 109.47138 * 304.99407 * 20 19 9 39 39 H 1.09006 * 109.47252 * 180.02562 * 22 21 20 40 40 H 1.08998 * 109.47054 * 299.99535 * 22 21 20 41 41 H 1.08992 * 109.47292 * 59.99936 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3880 2.1716 0.4810 5 6 2.8441 1.9076 -1.2157 6 6 3.5500 1.6579 0.1186 7 1 4.1803 0.7719 0.1963 8 6 4.0298 2.8804 0.9036 9 7 5.4945 2.8492 1.0114 10 6 5.9598 3.7047 2.1114 11 6 5.6946 3.0196 3.4272 12 1 5.1564 2.0835 3.4498 13 6 6.1390 3.5879 4.6021 14 7 6.7947 4.7276 4.5745 15 14 5.8109 2.7384 6.2331 16 1 5.0603 1.4796 5.9934 17 1 7.1019 2.4267 6.8974 18 1 5.0090 3.6339 7.1051 19 6 6.1242 3.2354 -0.2584 20 6 7.6265 2.9541 -0.1890 21 8 7.8427 1.5465 -0.0726 22 6 9.2204 1.1741 0.0006 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8898 28 1 3.0102 1.1857 -2.0154 29 1 2.7212 2.9426 -1.5344 30 1 3.7229 3.7886 0.3849 31 1 3.5917 2.8662 1.9016 32 1 7.0295 3.8843 2.0043 33 1 5.4269 4.6552 2.0827 34 1 7.1077 5.1272 5.4011 35 1 5.6839 2.6593 -1.0723 36 1 5.9614 4.2984 -0.4361 37 1 8.1073 3.3218 -1.0955 38 1 8.0511 3.4599 0.6782 39 1 9.2997 0.0903 0.0869 40 1 9.7345 1.5048 -0.9018 41 1 9.6777 1.6428 0.8718 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723125105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:57 Heat of formation + Delta-G solvation = -49.247509 kcal Electronic energy + Delta-G solvation = -17871.992327 eV Core-core repulsion = 15172.749969 eV Total energy + Delta-G solvation = -2699.242358 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.77068 -38.67794 -37.21082 -34.66776 -32.98409 -30.99012 -29.26433 -27.29172 -26.18537 -24.57189 -24.34698 -21.98459 -21.22388 -21.04250 -18.61870 -17.35862 -17.08333 -16.68552 -16.08480 -16.03227 -15.77304 -15.23818 -14.93673 -14.77065 -14.35186 -13.89091 -13.68772 -13.35017 -13.04129 -12.90234 -12.86317 -12.68067 -12.49582 -12.43333 -12.19531 -12.04776 -11.98107 -11.81281 -11.52186 -11.28347 -10.67205 -10.65243 -10.42342 -10.39277 -8.91499 -8.18326 -6.26677 1.38914 1.39636 1.53691 2.40824 2.91066 3.00614 3.12070 3.28352 3.83923 4.05386 4.12387 4.20671 4.31348 4.34743 4.46853 4.48262 4.56367 4.56722 4.59753 4.68290 4.71908 4.86510 4.88041 4.89251 4.92895 5.00848 5.05491 5.19527 5.23635 5.28027 5.30243 5.32934 5.45666 5.58782 5.68739 6.11114 6.38092 6.47009 6.71656 6.88856 7.41998 8.92205 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.013421 B = 0.007731 C = 0.005569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.800264 B = 3620.721733 C = 5026.301527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.146 4.146 4 H 0.098 0.902 5 C -0.162 4.162 6 C -0.145 4.145 7 H 0.094 0.906 8 C 0.099 3.901 9 N -0.534 5.534 10 C 0.205 3.795 11 C -0.512 4.512 12 H 0.055 0.945 13 C 0.002 3.998 14 N -0.935 5.935 15 Si 0.964 3.036 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.277 1.277 19 C 0.058 3.942 20 C 0.069 3.931 21 O -0.397 6.397 22 C 0.028 3.972 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.025 0.975 31 H 0.053 0.947 32 H 0.015 0.985 33 H -0.042 1.042 34 H 0.263 0.737 35 H 0.090 0.910 36 H 0.039 0.961 37 H 0.073 0.927 38 H 0.028 0.972 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.244 -6.737 -12.178 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 C -0.165 4.165 4 H 0.116 0.884 5 C -0.199 4.199 6 C -0.164 4.164 7 H 0.112 0.888 8 C -0.029 4.029 9 N -0.258 5.258 10 C 0.079 3.921 11 C -0.551 4.551 12 H 0.073 0.927 13 C -0.196 4.196 14 N -0.577 5.577 15 Si 0.789 3.211 16 H -0.191 1.191 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.070 4.070 20 C -0.008 4.008 21 O -0.316 6.316 22 C -0.069 4.069 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.123 0.877 29 H 0.111 0.889 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.033 0.967 33 H -0.024 1.024 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.057 0.943 37 H 0.091 0.909 38 H 0.046 0.954 39 H 0.114 0.886 40 H 0.076 0.924 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.168 -7.226 -11.961 14.900 hybrid contribution 0.277 1.131 1.027 1.552 sum -4.891 -6.095 -10.935 13.440 Atomic orbital electron populations 1.21715 0.94402 1.02099 1.01935 1.21104 0.96752 0.93228 1.01827 1.22527 0.92781 0.98746 1.02405 0.88391 1.23238 1.03202 1.02353 0.91115 1.22228 0.94781 0.99324 1.00065 0.88754 1.21463 0.87905 0.94833 0.98699 1.61959 1.05888 1.54323 1.03662 1.19465 0.94277 0.89168 0.89224 1.21459 1.34977 1.07017 0.91637 0.92685 1.25839 0.95069 0.95696 1.02958 1.70079 1.39627 1.19424 1.28521 0.85414 0.78050 0.78679 0.78987 1.19100 1.20331 1.20269 1.22119 0.93731 0.98028 0.93101 1.22600 0.96406 0.82226 0.99522 1.87926 1.25781 1.23080 1.94851 1.22843 0.82258 1.01723 1.00027 0.92110 0.91760 0.93085 0.91245 0.92644 0.87704 0.88862 0.95727 0.92854 0.96735 1.02403 0.92784 0.89215 0.94281 0.90875 0.95379 0.88641 0.92408 0.95409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.87 71.98 0.71 -1.97 16 2 C -0.09 -2.08 6.22 30.59 0.19 -1.89 16 3 C -0.15 -3.88 5.46 -10.80 -0.06 -3.94 16 4 H 0.10 2.64 8.07 -2.39 -0.02 2.62 16 5 C -0.16 -4.08 9.82 30.60 0.30 -3.78 16 6 C -0.15 -4.76 4.91 -10.79 -0.05 -4.81 16 7 H 0.09 3.43 8.14 -2.38 -0.02 3.41 16 8 C 0.10 3.99 5.09 86.30 0.44 4.43 16 9 N -0.53 -24.19 4.31 -900.79 -3.88 -28.07 16 10 C 0.20 11.22 4.59 85.55 0.39 11.61 16 11 C -0.51 -30.21 8.52 25.60 0.22 -29.99 16 12 H 0.05 3.27 7.75 -2.91 -0.02 3.25 16 13 C 0.00 0.10 5.46 84.65 0.46 0.57 16 14 N -0.94 -57.19 13.29 21.44 0.28 -56.91 16 15 Si 0.96 45.73 29.54 68.60 2.03 47.76 16 16 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 C 0.06 2.18 5.17 86.30 0.45 2.62 16 20 C 0.07 2.51 6.02 71.98 0.43 2.94 16 21 O -0.40 -15.00 10.65 -148.98 -1.59 -16.59 16 22 C 0.03 0.80 11.01 113.37 1.25 2.05 16 23 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 1.44 7.88 -2.38 -0.02 1.42 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.10 2.29 8.03 -2.38 -0.02 2.27 16 29 H 0.09 2.24 8.03 -2.39 -0.02 2.22 16 30 H 0.02 0.94 7.73 -2.39 -0.02 0.92 16 31 H 0.05 2.43 7.24 -2.39 -0.02 2.41 16 32 H 0.01 0.86 5.82 -2.39 -0.01 0.84 16 33 H -0.04 -2.45 8.00 -2.39 -0.02 -2.47 16 34 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.09 2.99 7.44 -2.38 -0.02 2.98 16 36 H 0.04 1.41 8.12 -2.39 -0.02 1.39 16 37 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.03 1.18 6.08 -2.39 -0.01 1.17 16 39 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 40 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -66.54 333.01 2.53 -64.01 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.96 Total: 11.97 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 4.73 Total: -22.17 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -3.59 Total: -84.98 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -1.59 Total: -16.59 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -66.54 2.53 -64.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723125105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.762 kcal (2) G-P(sol) polarization free energy of solvation -66.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds