Wall clock time and date at job start Sun Mar 29 2020 22:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46646 * 2 1 4 4 C 1.52998 * 109.47012 * 120.00064 * 2 1 3 5 5 N 1.46900 * 109.47393 * 61.85094 * 4 2 1 6 6 C 1.46899 * 111.00132 * 199.95237 * 5 4 2 7 7 C 1.50706 * 109.46938 * 72.74107 * 6 5 4 8 8 H 1.08001 * 119.99662 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99846 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99704 * 180.02562 * 9 7 6 11 11 Si 1.86794 * 119.99956 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47274 * 90.00607 * 11 9 7 13 13 H 1.48502 * 109.46838 * 210.00081 * 11 9 7 14 14 H 1.48495 * 109.47161 * 329.99959 * 11 9 7 15 15 C 1.46899 * 110.99666 * 76.00083 * 5 4 2 16 16 C 1.53004 * 109.46928 * 211.45297 * 15 5 4 17 17 C 1.52991 * 112.99912 * 300.78228 * 16 15 5 18 18 C 1.54033 * 113.92206 * 72.71413 * 16 15 5 19 19 O 1.44176 * 85.51740 * 136.81538 * 18 16 15 20 20 C 1.44181 * 93.34088 * 335.80724 * 19 18 16 21 21 H 1.08992 * 109.47614 * 304.70660 * 1 2 3 22 22 H 1.09000 * 109.47235 * 64.71083 * 1 2 3 23 23 H 1.09007 * 109.46533 * 184.70531 * 1 2 3 24 24 H 1.09003 * 109.47134 * 240.00238 * 2 1 3 25 25 H 1.09003 * 109.46514 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.47333 * 299.99434 * 3 2 1 27 27 H 1.08993 * 109.47291 * 60.00343 * 3 2 1 28 28 H 1.08999 * 109.47216 * 301.85031 * 4 2 1 29 29 H 1.09004 * 109.46709 * 181.85527 * 4 2 1 30 30 H 1.08991 * 109.47218 * 192.73916 * 6 5 4 31 31 H 1.09000 * 109.47377 * 312.74358 * 6 5 4 32 32 H 0.96999 * 119.99881 * 179.97438 * 10 9 7 33 33 H 1.09003 * 109.47271 * 91.45787 * 15 5 4 34 34 H 1.09000 * 109.47360 * 331.45431 * 15 5 4 35 35 H 1.09004 * 109.47459 * 300.15418 * 17 16 15 36 36 H 1.08995 * 109.47527 * 60.16043 * 17 16 15 37 37 H 1.09006 * 109.47156 * 180.15819 * 17 16 15 38 38 H 1.09000 * 113.86495 * 250.96138 * 18 16 15 39 39 H 1.09000 * 113.87095 * 22.67173 * 18 16 15 40 40 H 1.08997 * 113.86327 * 270.04532 * 20 19 18 41 41 H 1.08996 * 113.98376 * 138.35106 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.5872 -2.1186 1.2271 6 6 1.6321 -2.7079 2.5719 7 6 0.5172 -2.1354 3.4088 8 1 -0.1570 -1.4063 2.9841 9 6 0.3585 -2.5415 4.7168 10 7 -0.6147 -2.0423 5.4469 11 14 1.5251 -3.8020 5.4514 12 1 2.6818 -3.1050 6.0691 13 1 0.8121 -4.5916 6.4874 14 1 2.0087 -4.7114 4.3817 15 6 2.3777 -2.9131 0.2775 16 6 1.5025 -4.0200 -0.3138 17 6 0.9354 -4.9648 0.7475 18 6 0.4530 -3.5151 -1.3219 19 8 0.8366 -4.6534 -2.1192 20 6 2.1419 -4.7442 -1.5136 21 1 -0.3634 0.5851 0.8447 22 1 -0.3634 0.4390 -0.9292 23 1 -0.3633 -1.0243 0.0843 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 1.6498 -0.2270 2.1389 29 1 3.1295 -0.6925 1.2660 30 1 1.5134 -3.7889 2.4991 31 1 2.5906 -2.4782 3.0375 32 1 -0.7266 -2.3283 6.3669 33 1 3.2269 -3.3590 0.7954 34 1 2.7386 -2.2682 -0.5237 35 1 1.7552 -5.4401 1.2863 36 1 0.3209 -4.3984 1.4472 37 1 0.3261 -5.7292 0.2652 38 1 -0.5713 -3.5607 -0.9521 39 1 0.7022 -2.5554 -1.7747 40 1 2.9068 -4.1599 -2.0249 41 1 2.4590 -5.7639 -1.2952 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743851172.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:47 Heat of formation + Delta-G solvation = -18.504840 kcal Electronic energy + Delta-G solvation = -18891.425286 eV Core-core repulsion = 16193.516030 eV Total energy + Delta-G solvation = -2697.909256 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.43401 -37.47265 -34.36006 -32.57746 -31.30139 -28.35397 -26.72369 -26.27322 -26.16293 -25.34483 -23.25360 -20.59849 -19.39081 -18.45055 -16.78336 -15.82548 -15.74822 -15.57778 -14.82985 -14.50372 -14.22089 -13.67754 -13.34359 -13.14243 -12.71267 -12.59142 -12.35505 -11.93439 -11.79220 -11.60104 -11.49873 -11.23566 -11.06631 -10.80649 -10.58729 -10.49463 -10.33792 -10.11522 -10.07276 -9.77290 -9.67935 -9.41428 -9.09273 -8.56301 -7.35752 -6.05308 -4.01426 3.25915 3.34437 3.35147 3.98878 4.36970 4.41084 4.89588 5.10300 5.27001 5.29767 5.37897 5.42373 5.50802 5.53886 5.65207 5.73386 5.85358 5.91890 6.01429 6.09281 6.11480 6.18702 6.27791 6.31406 6.33399 6.39170 6.42775 6.46412 6.49442 6.57983 6.75824 6.86297 6.92959 6.96750 7.03701 7.64234 7.92185 8.06049 8.66837 9.06179 9.57300 11.07922 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017036 B = 0.009731 C = 0.007091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.169336 B = 2876.755899 C = 3947.914862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.146 4.146 4 C 0.065 3.935 5 N -0.518 5.518 6 C 0.149 3.851 7 C -0.503 4.503 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.900 5.900 11 Si 0.870 3.130 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.267 1.267 15 C 0.058 3.942 16 C -0.109 4.109 17 C -0.134 4.134 18 C 0.057 3.943 19 O -0.389 6.389 20 C 0.036 3.964 21 H 0.051 0.949 22 H 0.034 0.966 23 H 0.073 0.927 24 H 0.057 0.943 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.087 0.913 29 H 0.017 0.983 30 H 0.043 0.957 31 H -0.021 1.021 32 H 0.262 0.738 33 H 0.032 0.968 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.094 0.906 37 H 0.051 0.949 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.183 -0.380 -11.697 13.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.108 4.108 3 C -0.203 4.203 4 C -0.063 4.063 5 N -0.241 5.241 6 C 0.024 3.976 7 C -0.541 4.541 8 H 0.100 0.900 9 C -0.133 4.133 10 N -0.540 5.540 11 Si 0.698 3.302 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.192 1.192 15 C -0.071 4.071 16 C -0.109 4.109 17 C -0.191 4.191 18 C -0.020 4.020 19 O -0.308 6.308 20 C -0.041 4.041 21 H 0.070 0.930 22 H 0.053 0.947 23 H 0.092 0.908 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.106 0.894 29 H 0.035 0.965 30 H 0.060 0.940 31 H -0.003 1.003 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.113 0.887 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.473 -0.548 -11.852 13.066 hybrid contribution 1.639 -0.528 1.016 2.000 sum 7.112 -1.076 -10.836 13.006 Atomic orbital electron populations 1.21691 0.94523 1.03271 0.99760 1.21097 0.96983 0.94694 0.97997 1.21820 1.00215 0.96832 1.01477 1.22107 0.95720 0.89827 0.98660 1.61833 1.52211 1.00812 1.09260 1.20530 0.95749 0.96383 0.84985 1.21036 1.12904 1.25018 0.95144 0.90009 1.24885 0.95214 0.96188 0.97031 1.69888 1.31395 1.43916 1.08764 0.86945 0.81447 0.82431 0.79396 1.20534 1.21250 1.19210 1.22144 0.94024 0.94708 0.96215 1.23495 0.95941 0.95964 0.95537 1.21760 1.01094 0.98205 0.97999 1.23935 1.00149 0.89230 0.88679 1.89597 1.28541 1.48470 1.64199 1.24055 0.87200 1.00953 0.91908 0.93012 0.94655 0.90786 0.92473 0.93466 0.93207 0.92555 0.89438 0.96520 0.93953 1.00293 0.92761 0.94974 0.91946 0.92978 0.88703 0.93013 0.89080 0.90526 0.90855 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.12 37.16 0.34 -1.78 16 2 C -0.09 -1.32 2.95 -90.62 -0.27 -1.58 16 3 C -0.15 -1.88 9.19 37.16 0.34 -1.54 16 4 C 0.07 1.16 4.14 -3.83 -0.02 1.14 16 5 N -0.52 -9.81 3.35 -236.07 -0.79 -10.60 16 6 C 0.15 3.39 2.85 -4.97 -0.01 3.38 16 7 C -0.50 -13.55 8.92 -34.44 -0.31 -13.85 16 8 H 0.08 2.41 7.98 -52.49 -0.42 2.00 16 9 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 10 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 11 Si 0.87 21.06 27.47 -169.99 -4.67 16.39 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 15 C 0.06 0.93 4.39 -3.82 -0.02 0.91 16 16 C -0.11 -1.65 1.14 -153.43 -0.18 -1.83 16 17 C -0.13 -2.22 7.54 37.15 0.28 -1.94 16 18 C 0.06 0.85 8.36 37.61 0.31 1.16 16 19 O -0.39 -6.12 12.36 -35.23 -0.44 -6.56 16 20 C 0.04 0.48 8.36 37.61 0.31 0.80 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.07 1.28 7.52 -51.92 -0.39 0.89 16 24 H 0.06 0.80 6.85 -51.93 -0.36 0.45 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.09 1.81 7.10 -51.93 -0.37 1.44 16 29 H 0.02 0.28 8.00 -51.93 -0.42 -0.13 16 30 H 0.04 0.96 3.74 -51.93 -0.19 0.77 16 31 H -0.02 -0.48 7.47 -51.93 -0.39 -0.87 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.03 0.52 7.82 -51.93 -0.41 0.12 16 34 H 0.06 0.90 6.48 -51.93 -0.34 0.56 16 35 H 0.05 0.84 7.87 -51.93 -0.41 0.43 16 36 H 0.09 1.86 6.13 -51.93 -0.32 1.54 16 37 H 0.05 0.80 8.09 -51.93 -0.42 0.38 16 38 H 0.09 1.40 8.10 -51.93 -0.42 0.98 16 39 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 40 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 41 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 316.78 15.07 4.77 4.77 Total: -1.00 -28.71 316.78 -7.04 -35.75 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -7.38 Total: -0.22 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 0.70 Total: -13.32 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: -0.02 Total: -36.82 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.44 Total: -6.56 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.71 -7.04 -35.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743851172.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.244 kcal (2) G-P(sol) polarization free energy of solvation -28.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds