Wall clock time and date at job start Sun Mar 29 2020 22:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46646 * 2 1 4 4 C 1.52998 * 109.47012 * 120.00064 * 2 1 3 5 5 N 1.46900 * 109.47393 * 61.85094 * 4 2 1 6 6 C 1.46899 * 111.00132 * 199.95237 * 5 4 2 7 7 C 1.50706 * 109.46938 * 72.74107 * 6 5 4 8 8 H 1.08001 * 119.99662 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99846 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99704 * 180.02562 * 9 7 6 11 11 Si 1.86794 * 119.99956 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47274 * 90.00607 * 11 9 7 13 13 H 1.48502 * 109.46838 * 210.00081 * 11 9 7 14 14 H 1.48495 * 109.47161 * 329.99959 * 11 9 7 15 15 C 1.46899 * 110.99666 * 76.00083 * 5 4 2 16 16 C 1.53004 * 109.46928 * 211.45297 * 15 5 4 17 17 C 1.52991 * 112.99912 * 300.78228 * 16 15 5 18 18 C 1.54033 * 113.92206 * 72.71413 * 16 15 5 19 19 O 1.44176 * 85.51740 * 136.81538 * 18 16 15 20 20 C 1.44181 * 93.34088 * 335.80724 * 19 18 16 21 21 H 1.08992 * 109.47614 * 304.70660 * 1 2 3 22 22 H 1.09000 * 109.47235 * 64.71083 * 1 2 3 23 23 H 1.09007 * 109.46533 * 184.70531 * 1 2 3 24 24 H 1.09003 * 109.47134 * 240.00238 * 2 1 3 25 25 H 1.09003 * 109.46514 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.47333 * 299.99434 * 3 2 1 27 27 H 1.08993 * 109.47291 * 60.00343 * 3 2 1 28 28 H 1.08999 * 109.47216 * 301.85031 * 4 2 1 29 29 H 1.09004 * 109.46709 * 181.85527 * 4 2 1 30 30 H 1.08991 * 109.47218 * 192.73916 * 6 5 4 31 31 H 1.09000 * 109.47377 * 312.74358 * 6 5 4 32 32 H 0.96999 * 119.99881 * 179.97438 * 10 9 7 33 33 H 1.09003 * 109.47271 * 91.45787 * 15 5 4 34 34 H 1.09000 * 109.47360 * 331.45431 * 15 5 4 35 35 H 1.09004 * 109.47459 * 300.15418 * 17 16 15 36 36 H 1.08995 * 109.47527 * 60.16043 * 17 16 15 37 37 H 1.09006 * 109.47156 * 180.15819 * 17 16 15 38 38 H 1.09000 * 113.86495 * 250.96138 * 18 16 15 39 39 H 1.09000 * 113.87095 * 22.67173 * 18 16 15 40 40 H 1.08997 * 113.86327 * 270.04532 * 20 19 18 41 41 H 1.08996 * 113.98376 * 138.35106 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.5872 -2.1186 1.2271 6 6 1.6321 -2.7079 2.5719 7 6 0.5172 -2.1354 3.4088 8 1 -0.1570 -1.4063 2.9841 9 6 0.3585 -2.5415 4.7168 10 7 -0.6147 -2.0423 5.4469 11 14 1.5251 -3.8020 5.4514 12 1 2.6818 -3.1050 6.0691 13 1 0.8121 -4.5916 6.4874 14 1 2.0087 -4.7114 4.3817 15 6 2.3777 -2.9131 0.2775 16 6 1.5025 -4.0200 -0.3138 17 6 0.9354 -4.9648 0.7475 18 6 0.4530 -3.5151 -1.3219 19 8 0.8366 -4.6534 -2.1192 20 6 2.1419 -4.7442 -1.5136 21 1 -0.3634 0.5851 0.8447 22 1 -0.3634 0.4390 -0.9292 23 1 -0.3633 -1.0243 0.0843 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 1.6498 -0.2270 2.1389 29 1 3.1295 -0.6925 1.2660 30 1 1.5134 -3.7889 2.4991 31 1 2.5906 -2.4782 3.0375 32 1 -0.7266 -2.3283 6.3669 33 1 3.2269 -3.3590 0.7954 34 1 2.7386 -2.2682 -0.5237 35 1 1.7552 -5.4401 1.2863 36 1 0.3209 -4.3984 1.4472 37 1 0.3261 -5.7292 0.2652 38 1 -0.5713 -3.5607 -0.9521 39 1 0.7022 -2.5554 -1.7747 40 1 2.9068 -4.1599 -2.0249 41 1 2.4590 -5.7639 -1.2952 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743851172.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:47 Heat of formation + Delta-G solvation = -36.792959 kcal Electronic energy + Delta-G solvation = -18892.218318 eV Core-core repulsion = 16193.516030 eV Total energy + Delta-G solvation = -2698.702288 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.61634 -38.89668 -35.73307 -34.55974 -32.70888 -30.13445 -27.90250 -27.59763 -27.33950 -26.70607 -24.85592 -22.27946 -20.70087 -19.67129 -18.83171 -17.09785 -16.99679 -16.79366 -16.47423 -15.91159 -15.60635 -15.30469 -14.79449 -14.45610 -14.29532 -14.06445 -13.83728 -13.25515 -13.11185 -12.92352 -12.86993 -12.75933 -12.57107 -12.47535 -12.03696 -11.81811 -11.71724 -11.62629 -11.54244 -11.33420 -11.12619 -10.96193 -10.71140 -10.45220 -8.87525 -8.23431 -6.23564 1.33300 1.35077 1.44719 2.35781 2.86269 3.06709 3.11745 3.62491 3.87928 4.05218 4.20029 4.22725 4.34058 4.40311 4.48223 4.56040 4.62595 4.73135 4.79030 4.85021 4.88342 4.92800 4.99419 5.01640 5.05116 5.12787 5.13895 5.18674 5.24132 5.28840 5.32718 5.35786 5.50001 5.57405 5.65261 5.70392 6.09459 6.49751 6.74924 6.84181 7.39038 8.93395 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017036 B = 0.009731 C = 0.007091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.169336 B = 2876.755899 C = 3947.914862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.080 4.080 3 C -0.142 4.142 4 C 0.066 3.934 5 N -0.526 5.526 6 C 0.161 3.839 7 C -0.498 4.498 8 H 0.039 0.961 9 C 0.007 3.993 10 N -0.951 5.951 11 Si 0.936 3.064 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.246 1.246 15 C 0.060 3.940 16 C -0.115 4.115 17 C -0.130 4.130 18 C 0.059 3.941 19 O -0.407 6.407 20 C 0.047 3.953 21 H 0.026 0.974 22 H 0.060 0.940 23 H 0.052 0.948 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.046 0.954 29 H 0.029 0.971 30 H 0.049 0.951 31 H -0.025 1.025 32 H 0.263 0.737 33 H 0.035 0.965 34 H 0.087 0.913 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.554 -1.214 -13.783 16.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.099 4.099 3 C -0.199 4.199 4 C -0.062 4.062 5 N -0.250 5.250 6 C 0.034 3.966 7 C -0.536 4.536 8 H 0.057 0.943 9 C -0.190 4.190 10 N -0.592 5.592 11 Si 0.761 3.239 12 H -0.199 1.199 13 H -0.212 1.212 14 H -0.169 1.169 15 C -0.068 4.068 16 C -0.116 4.116 17 C -0.187 4.187 18 C -0.018 4.018 19 O -0.326 6.326 20 C -0.029 4.029 21 H 0.045 0.955 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.096 0.904 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.047 0.953 30 H 0.067 0.933 31 H -0.008 1.008 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.859 -1.380 -13.968 16.087 hybrid contribution 0.837 -0.206 1.611 1.828 sum 8.697 -1.586 -12.357 15.193 Atomic orbital electron populations 1.21633 0.95530 1.01641 1.00018 1.21054 0.95999 0.95884 0.96990 1.21784 1.01054 0.95267 1.01827 1.22092 0.96239 0.89178 0.98652 1.61732 1.53826 1.01623 1.07775 1.20282 0.93400 0.96484 0.86471 1.21253 1.13084 1.23600 0.95683 0.94266 1.25758 0.97002 0.98564 0.97651 1.70051 1.33822 1.46110 1.09235 0.85873 0.79128 0.80007 0.78904 1.19891 1.21172 1.16940 1.22228 0.93727 0.94897 0.95950 1.23520 0.96442 0.95841 0.95761 1.21651 1.00826 0.98274 0.97905 1.23928 0.99438 0.89789 0.88634 1.89589 1.29961 1.48668 1.64413 1.24204 0.86755 1.01961 0.90018 0.95463 0.92058 0.92927 0.90371 0.92104 0.91166 0.93948 0.93514 0.95282 0.93321 1.00766 0.92794 0.94660 0.89426 0.92491 0.92323 0.92351 0.90516 0.89099 0.88251 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 9.12 71.98 0.66 -3.41 16 2 C -0.08 -2.24 2.95 -10.79 -0.03 -2.27 16 3 C -0.14 -3.34 9.19 71.98 0.66 -2.68 16 4 C 0.07 2.33 4.14 86.30 0.36 2.69 16 5 N -0.53 -19.63 3.35 -900.79 -3.02 -22.65 16 6 C 0.16 7.29 2.85 85.56 0.24 7.53 16 7 C -0.50 -27.88 8.92 25.60 0.23 -27.65 16 8 H 0.04 2.47 7.98 -2.91 -0.02 2.45 16 9 C 0.01 0.39 5.47 84.66 0.46 0.86 16 10 N -0.95 -59.30 13.96 21.45 0.30 -59.00 16 11 Si 0.94 43.73 27.47 68.60 1.88 45.62 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 14 H -0.25 -10.52 6.54 99.48 0.65 -9.87 16 15 C 0.06 1.75 4.39 86.30 0.38 2.13 16 16 C -0.11 -3.22 1.14 -51.48 -0.06 -3.27 16 17 C -0.13 -4.15 7.54 71.98 0.54 -3.60 16 18 C 0.06 1.64 8.36 72.27 0.60 2.24 16 19 O -0.41 -11.68 12.36 -148.98 -1.84 -13.53 16 20 C 0.05 1.08 8.36 72.27 0.60 1.68 16 21 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.05 1.85 7.52 -2.38 -0.02 1.83 16 24 H 0.08 1.89 6.85 -2.39 -0.02 1.88 16 25 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.05 2.01 7.10 -2.39 -0.02 1.99 16 29 H 0.03 0.94 8.00 -2.38 -0.02 0.92 16 30 H 0.05 2.17 3.74 -2.39 -0.01 2.16 16 31 H -0.03 -1.17 7.47 -2.39 -0.02 -1.19 16 32 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 33 H 0.04 1.03 7.82 -2.39 -0.02 1.01 16 34 H 0.09 2.13 6.48 -2.39 -0.02 2.12 16 35 H 0.06 1.73 7.87 -2.38 -0.02 1.71 16 36 H 0.06 2.30 6.13 -2.39 -0.01 2.29 16 37 H 0.06 1.75 8.09 -2.38 -0.02 1.73 16 38 H 0.08 2.34 8.10 -2.39 -0.02 2.32 16 39 H 0.09 2.27 8.10 -2.39 -0.02 2.26 16 40 H 0.10 1.78 8.10 -2.39 -0.02 1.76 16 41 H 0.10 1.97 8.10 -2.39 -0.02 1.96 16 Total: -1.00 -64.32 316.78 2.89 -61.43 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.91 Total: 13.89 kcal Atomic # 6 Polarization: -30.41 SS G_CDS: 4.65 Total: -25.76 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -2.72 Total: -81.65 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -1.84 Total: -13.53 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.88 Total: 45.62 kcal Total: -64.32 2.89 -61.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743851172.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.637 kcal (2) G-P(sol) polarization free energy of solvation -64.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds