Wall clock time and date at job start Sun Mar 29 2020 22:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46974 * 2 1 4 4 C 1.52996 * 109.47325 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47583 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47231 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.46697 * 180.02562 * 6 5 4 8 8 C 1.48720 * 111.01831 * 74.48907 * 7 6 5 9 9 C 1.54381 * 104.51692 * 158.96284 * 8 7 6 10 10 C 1.54257 * 105.14978 * 336.27274 * 9 8 7 11 11 O 1.42906 * 110.32239 * 240.94794 * 10 9 8 12 12 C 1.50697 * 110.32628 * 118.84329 * 10 9 8 13 13 H 1.07995 * 120.00073 * 241.44522 * 12 10 9 14 14 C 1.37883 * 119.99811 * 61.45328 * 12 10 9 15 15 N 1.31514 * 119.99933 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99722 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47538 * 0.02562 * 16 14 12 18 18 H 1.48510 * 109.46864 * 119.99931 * 16 14 12 19 19 H 1.48499 * 109.47368 * 239.99818 * 16 14 12 20 20 C 1.48567 * 110.99718 * 189.99889 * 7 6 5 21 21 H 1.09002 * 109.47146 * 179.97438 * 1 2 3 22 22 H 1.08991 * 109.47348 * 300.00114 * 1 2 3 23 23 H 1.08997 * 109.47144 * 60.00589 * 1 2 3 24 24 H 1.08997 * 109.47422 * 239.99451 * 2 1 3 25 25 H 1.08997 * 109.47144 * 119.99410 * 2 1 3 26 26 H 1.08997 * 109.47494 * 59.99495 * 3 2 1 27 27 H 1.09004 * 109.47335 * 299.99555 * 3 2 1 28 28 H 1.09001 * 109.47611 * 59.99633 * 4 3 2 29 29 H 1.09002 * 109.47084 * 300.00003 * 4 3 2 30 30 H 1.09001 * 109.46812 * 59.99308 * 5 4 3 31 31 H 1.08997 * 109.46710 * 299.99867 * 5 4 3 32 32 H 1.08997 * 109.47422 * 59.99616 * 6 5 4 33 33 H 1.08999 * 109.46632 * 299.99620 * 6 5 4 34 34 H 1.09004 * 110.38960 * 40.24251 * 8 7 6 35 35 H 1.08996 * 110.50963 * 277.74694 * 8 7 6 36 36 H 1.09002 * 110.32526 * 217.32092 * 9 8 7 37 37 H 1.08998 * 110.32190 * 95.21733 * 9 8 7 38 38 H 0.96695 * 113.99929 * 298.55053 * 11 10 9 39 39 H 0.97002 * 119.99478 * 180.02562 * 15 14 12 40 40 H 1.08999 * 110.41133 * 82.17552 * 20 7 6 41 41 H 1.09001 * 110.41003 * 319.73948 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8851 0.0000 7 7 6.0995 4.2701 0.0000 8 6 5.9272 4.8968 1.3377 9 6 6.9299 6.0706 1.3472 10 6 8.0057 5.6902 0.3092 11 8 9.2860 5.5883 0.9359 12 6 8.0466 6.7096 -0.8000 13 1 7.8315 6.4116 -1.8155 14 6 8.3588 8.0228 -0.5182 15 7 8.6214 8.3855 0.7183 16 14 8.4101 9.2862 -1.8932 17 1 8.0793 8.6282 -3.1828 18 1 7.4206 10.3586 -1.6171 19 1 9.7705 9.8763 -1.9727 20 6 7.5648 4.3168 -0.2408 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 3.9337 0.9286 -0.8891 29 1 3.9329 0.9289 0.8909 30 1 3.7161 3.3995 0.8895 31 1 3.7170 3.3983 -0.8904 32 1 5.9733 2.3708 -0.8897 33 1 5.9732 2.3717 0.8903 34 1 6.1698 4.1833 2.1253 35 1 4.9088 5.2658 1.4582 36 1 7.3780 6.1778 2.3350 37 1 6.4326 6.9956 1.0553 38 1 9.5936 6.4120 1.3382 39 1 8.8406 9.3094 0.9165 40 1 7.7770 4.2486 -1.3078 41 1 8.0646 3.5127 0.2992 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829974595.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:48 Heat of formation + Delta-G solvation = -78.210783 kcal Electronic energy + Delta-G solvation = -17687.513061 eV Core-core repulsion = 14987.014761 eV Total energy + Delta-G solvation = -2700.498300 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.41727 -36.47000 -34.88606 -32.63665 -32.04727 -29.72761 -27.99780 -26.98111 -24.57013 -23.12122 -21.27061 -21.00971 -19.96322 -19.27123 -16.96851 -15.96674 -15.32017 -14.87693 -14.67022 -14.28421 -13.93453 -13.78506 -13.39719 -13.09783 -12.64471 -12.34749 -12.05066 -11.97627 -11.68100 -11.42147 -11.26110 -11.11050 -10.99696 -10.80573 -10.70523 -10.55265 -10.46896 -10.36077 -10.20652 -10.16257 -9.83660 -8.97545 -8.52374 -8.07057 -7.74832 -6.11851 -4.17022 3.27910 3.36079 3.41759 4.39208 4.46098 4.79851 4.84040 4.95977 5.12691 5.18511 5.34028 5.40296 5.48905 5.63308 5.71811 5.73873 5.81021 5.83821 5.95281 5.97499 6.01514 6.04179 6.12281 6.18629 6.24162 6.25925 6.41529 6.46310 6.57664 6.58640 6.92723 7.12745 7.28707 7.62450 7.73200 7.79900 7.91841 8.27766 8.85809 9.47538 9.56398 10.95712 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.038539 B = 0.004255 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.353140 B = 6578.227392 C = 6886.722714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.118 4.118 5 C -0.112 4.112 6 C 0.045 3.955 7 N -0.502 5.502 8 C 0.033 3.967 9 C -0.121 4.121 10 C 0.248 3.752 11 O -0.596 6.596 12 C -0.516 4.516 13 H 0.062 0.938 14 C 0.064 3.936 15 N -0.901 5.901 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.053 3.947 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.382 0.618 39 H 0.264 0.736 40 H 0.075 0.925 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.985 -11.745 0.504 16.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.157 4.157 5 C -0.150 4.150 6 C -0.084 4.084 7 N -0.226 5.226 8 C -0.094 4.094 9 C -0.160 4.160 10 C 0.208 3.792 11 O -0.404 6.404 12 C -0.555 4.555 13 H 0.081 0.919 14 C -0.137 4.137 15 N -0.542 5.542 16 Si 0.727 3.273 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.075 4.075 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.232 0.768 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -11.282 -11.931 -0.025 16.421 hybrid contribution 0.454 0.907 0.200 1.034 sum -10.828 -11.024 0.176 15.454 Atomic orbital electron populations 1.21782 0.96137 1.01320 1.01803 1.21546 0.95629 0.97292 1.01842 1.21615 0.95665 0.96325 1.02108 1.21579 0.95066 0.97274 1.01733 1.21518 0.95045 0.95772 1.02626 1.22261 0.95326 0.90771 1.00074 1.65312 1.15057 1.14688 1.27574 1.23180 1.00058 0.97053 0.89158 1.22849 0.97039 0.96848 0.99238 1.19275 0.80481 0.89996 0.89467 1.86083 1.37640 1.40095 1.76617 1.21695 1.46250 0.92971 0.94538 0.91945 1.25018 0.94458 0.98436 0.95773 1.69712 1.48181 1.18246 1.18032 0.86418 0.77502 0.81035 0.82306 1.19679 1.21010 1.21041 1.22972 0.86260 0.97733 1.00503 0.93027 0.92814 0.92783 0.92155 0.92219 0.92119 0.91969 0.92139 0.92386 0.92224 0.91246 0.91518 0.95471 0.95519 0.91699 0.93200 0.90676 0.76788 0.92590 0.90634 0.95294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.13 -1.07 5.93 -26.73 -0.16 -1.23 16 3 C -0.12 -1.17 5.21 -26.73 -0.14 -1.31 16 4 C -0.12 -1.30 5.21 -26.73 -0.14 -1.44 16 5 C -0.11 -1.53 5.33 -26.73 -0.14 -1.67 16 6 C 0.04 0.72 4.83 -3.82 -0.02 0.70 16 7 N -0.50 -10.16 5.34 -229.83 -1.23 -11.39 16 8 C 0.03 0.67 5.93 -2.09 -0.01 0.66 16 9 C -0.12 -2.90 5.55 -25.35 -0.14 -3.04 16 10 C 0.25 6.36 1.05 -90.39 -0.10 6.26 16 11 O -0.60 -15.93 12.94 -35.23 -0.46 -16.39 16 12 C -0.52 -14.27 8.10 -34.44 -0.28 -14.55 16 13 H 0.06 1.74 7.53 -52.49 -0.40 1.35 16 14 C 0.06 1.74 5.02 -17.82 -0.09 1.65 16 15 N -0.90 -24.59 10.81 55.43 0.60 -23.99 16 16 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C 0.05 1.20 5.74 -2.18 -0.01 1.19 16 21 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.83 7.47 -51.93 -0.39 0.45 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 33 H 0.03 0.43 7.77 -51.93 -0.40 0.03 16 34 H 0.03 0.51 7.75 -51.93 -0.40 0.11 16 35 H 0.06 1.22 7.86 -51.93 -0.41 0.81 16 36 H 0.05 1.20 7.98 -51.93 -0.41 0.78 16 37 H 0.07 1.96 7.23 -51.93 -0.38 1.58 16 38 H 0.38 10.28 7.32 45.56 0.33 10.61 16 39 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.08 1.72 7.67 -51.93 -0.40 1.32 16 41 H 0.03 0.64 7.94 -51.93 -0.41 0.23 16 LS Contribution 322.11 15.07 4.85 4.85 Total: -1.00 -27.82 322.11 -9.16 -36.97 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -7.05 Total: 7.29 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -0.86 Total: -13.59 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: -0.63 Total: -35.37 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.46 Total: -16.39 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.82 -9.16 -36.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829974595.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.236 kcal (2) G-P(sol) polarization free energy of solvation -27.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds