Wall clock time and date at job start Sun Mar 29 2020 22:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46974 * 2 1 4 4 C 1.52996 * 109.47325 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47583 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47231 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.46697 * 180.02562 * 6 5 4 8 8 C 1.48720 * 111.01831 * 74.48907 * 7 6 5 9 9 C 1.54381 * 104.51692 * 158.96284 * 8 7 6 10 10 C 1.54257 * 105.14978 * 336.27274 * 9 8 7 11 11 O 1.42906 * 110.32239 * 240.94794 * 10 9 8 12 12 C 1.50697 * 110.32628 * 118.84329 * 10 9 8 13 13 H 1.07995 * 120.00073 * 241.44522 * 12 10 9 14 14 C 1.37883 * 119.99811 * 61.45328 * 12 10 9 15 15 N 1.31514 * 119.99933 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99722 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47538 * 0.02562 * 16 14 12 18 18 H 1.48510 * 109.46864 * 119.99931 * 16 14 12 19 19 H 1.48499 * 109.47368 * 239.99818 * 16 14 12 20 20 C 1.48567 * 110.99718 * 189.99889 * 7 6 5 21 21 H 1.09002 * 109.47146 * 179.97438 * 1 2 3 22 22 H 1.08991 * 109.47348 * 300.00114 * 1 2 3 23 23 H 1.08997 * 109.47144 * 60.00589 * 1 2 3 24 24 H 1.08997 * 109.47422 * 239.99451 * 2 1 3 25 25 H 1.08997 * 109.47144 * 119.99410 * 2 1 3 26 26 H 1.08997 * 109.47494 * 59.99495 * 3 2 1 27 27 H 1.09004 * 109.47335 * 299.99555 * 3 2 1 28 28 H 1.09001 * 109.47611 * 59.99633 * 4 3 2 29 29 H 1.09002 * 109.47084 * 300.00003 * 4 3 2 30 30 H 1.09001 * 109.46812 * 59.99308 * 5 4 3 31 31 H 1.08997 * 109.46710 * 299.99867 * 5 4 3 32 32 H 1.08997 * 109.47422 * 59.99616 * 6 5 4 33 33 H 1.08999 * 109.46632 * 299.99620 * 6 5 4 34 34 H 1.09004 * 110.38960 * 40.24251 * 8 7 6 35 35 H 1.08996 * 110.50963 * 277.74694 * 8 7 6 36 36 H 1.09002 * 110.32526 * 217.32092 * 9 8 7 37 37 H 1.08998 * 110.32190 * 95.21733 * 9 8 7 38 38 H 0.96695 * 113.99929 * 298.55053 * 11 10 9 39 39 H 0.97002 * 119.99478 * 180.02562 * 15 14 12 40 40 H 1.08999 * 110.41133 * 82.17552 * 20 7 6 41 41 H 1.09001 * 110.41003 * 319.73948 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8851 0.0000 7 7 6.0995 4.2701 0.0000 8 6 5.9272 4.8968 1.3377 9 6 6.9299 6.0706 1.3472 10 6 8.0057 5.6902 0.3092 11 8 9.2860 5.5883 0.9359 12 6 8.0466 6.7096 -0.8000 13 1 7.8315 6.4116 -1.8155 14 6 8.3588 8.0228 -0.5182 15 7 8.6214 8.3855 0.7183 16 14 8.4101 9.2862 -1.8932 17 1 8.0793 8.6282 -3.1828 18 1 7.4206 10.3586 -1.6171 19 1 9.7705 9.8763 -1.9727 20 6 7.5648 4.3168 -0.2408 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 3.9337 0.9286 -0.8891 29 1 3.9329 0.9289 0.8909 30 1 3.7161 3.3995 0.8895 31 1 3.7170 3.3983 -0.8904 32 1 5.9733 2.3708 -0.8897 33 1 5.9732 2.3717 0.8903 34 1 6.1698 4.1833 2.1253 35 1 4.9088 5.2658 1.4582 36 1 7.3780 6.1778 2.3350 37 1 6.4326 6.9956 1.0553 38 1 9.5936 6.4120 1.3382 39 1 8.8406 9.3094 0.9165 40 1 7.7770 4.2486 -1.3078 41 1 8.0646 3.5127 0.2992 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829974595.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:48 Heat of formation + Delta-G solvation = -96.028292 kcal Electronic energy + Delta-G solvation = -17688.285686 eV Core-core repulsion = 14987.014761 eV Total energy + Delta-G solvation = -2701.270925 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.13443 -37.59700 -36.42141 -34.16154 -33.79239 -31.16447 -29.78130 -28.32146 -26.35059 -24.36041 -22.47130 -21.86203 -21.45476 -21.11410 -19.03803 -17.08602 -16.84168 -16.78465 -16.17918 -15.72273 -15.47311 -14.84492 -14.65354 -14.36787 -14.07398 -13.80078 -13.50833 -13.49028 -13.15855 -12.86355 -12.79097 -12.46341 -12.32582 -12.30830 -12.16454 -11.96630 -11.92075 -11.73557 -11.49949 -11.30468 -11.28724 -10.91328 -10.59628 -10.12711 -9.33746 -8.18821 -6.31652 1.40091 1.42899 1.54368 2.41396 2.96138 3.16024 3.83782 3.97779 4.01827 4.11608 4.21519 4.29421 4.31999 4.38711 4.52502 4.55867 4.58114 4.62710 4.74932 4.82562 4.89942 4.92702 4.99357 5.04383 5.12654 5.16382 5.23898 5.26711 5.30499 5.37936 5.43874 5.51993 5.56874 5.65863 5.78166 5.99270 6.18818 6.30161 6.73240 7.36258 7.44181 8.87301 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.038539 B = 0.004255 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.353140 B = 6578.227392 C = 6886.722714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.111 4.111 5 C -0.104 4.104 6 C 0.044 3.956 7 N -0.512 5.512 8 C 0.043 3.957 9 C -0.114 4.114 10 C 0.229 3.771 11 O -0.603 6.603 12 C -0.542 4.542 13 H 0.051 0.949 14 C 0.024 3.976 15 N -0.915 5.915 16 Si 0.960 3.040 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.279 1.279 20 C 0.060 3.940 21 H 0.059 0.941 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.041 0.959 35 H 0.082 0.918 36 H 0.041 0.959 37 H 0.047 0.953 38 H 0.377 0.623 39 H 0.268 0.732 40 H 0.068 0.932 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.110 -12.580 0.256 17.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.150 4.150 5 C -0.142 4.142 6 C -0.084 4.084 7 N -0.236 5.236 8 C -0.084 4.084 9 C -0.153 4.153 10 C 0.190 3.810 11 O -0.411 6.411 12 C -0.580 4.580 13 H 0.069 0.931 14 C -0.176 4.176 15 N -0.556 5.556 16 Si 0.786 3.214 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.205 1.205 20 C -0.068 4.068 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.226 0.774 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -12.417 -12.783 -0.268 17.823 hybrid contribution 0.818 1.162 0.289 1.451 sum -11.598 -11.621 0.021 16.418 Atomic orbital electron populations 1.21783 0.95539 1.01918 1.01827 1.21531 0.96174 0.96368 1.02113 1.21589 0.94734 0.97227 1.01962 1.21519 0.95841 0.95352 1.02240 1.21458 0.93064 0.97566 1.02117 1.22388 0.96909 0.88420 1.00726 1.65302 1.13230 1.17500 1.27599 1.23088 0.99780 0.95851 0.89718 1.22643 0.97316 0.97253 0.98061 1.19554 0.80332 0.91512 0.89603 1.86075 1.38592 1.39776 1.76687 1.21884 1.47349 0.94154 0.94589 0.93109 1.25696 0.93975 0.99968 0.97924 1.69787 1.47899 1.18700 1.19208 0.85483 0.77646 0.78703 0.79595 1.19724 1.20427 1.20469 1.22806 0.87995 0.96067 0.99887 0.92179 0.92789 0.92796 0.91907 0.91940 0.92234 0.92200 0.91650 0.91857 0.92450 0.92042 0.90828 0.94778 0.94071 0.89984 0.94063 0.93390 0.77382 0.92317 0.91316 0.94949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 71.98 0.71 -1.35 16 2 C -0.12 -1.86 5.93 30.59 0.18 -1.68 16 3 C -0.12 -2.05 5.21 30.59 0.16 -1.89 16 4 C -0.11 -2.19 5.21 30.59 0.16 -2.03 16 5 C -0.10 -2.63 5.33 30.60 0.16 -2.47 16 6 C 0.04 1.33 4.83 86.30 0.42 1.74 16 7 N -0.51 -20.12 5.34 -881.04 -4.70 -24.82 16 8 C 0.04 1.70 5.93 86.42 0.51 2.21 16 9 C -0.11 -5.49 5.55 31.49 0.17 -5.31 16 10 C 0.23 11.88 1.05 -10.65 -0.01 11.87 16 11 O -0.60 -32.68 12.94 -148.98 -1.93 -34.61 16 12 C -0.54 -30.29 8.10 25.60 0.21 -30.08 16 13 H 0.05 2.88 7.53 -2.91 -0.02 2.86 16 14 C 0.02 1.30 5.02 84.66 0.43 1.72 16 15 N -0.92 -50.28 10.81 21.45 0.23 -50.05 16 16 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 20 C 0.06 2.72 5.74 86.45 0.50 3.21 16 21 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 22 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 1.48 7.47 -2.39 -0.02 1.46 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 2.14 8.08 -2.39 -0.02 2.12 16 33 H 0.03 1.00 7.77 -2.39 -0.02 0.99 16 34 H 0.04 1.50 7.75 -2.38 -0.02 1.48 16 35 H 0.08 2.93 7.86 -2.39 -0.02 2.91 16 36 H 0.04 2.00 7.98 -2.39 -0.02 1.98 16 37 H 0.05 2.53 7.23 -2.39 -0.02 2.51 16 38 H 0.38 20.72 7.32 -74.06 -0.54 20.18 16 39 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 40 H 0.07 3.13 7.67 -2.39 -0.02 3.11 16 41 H 0.03 1.41 7.94 -2.39 -0.02 1.39 16 Total: -1.00 -58.34 322.11 -0.35 -58.68 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: 0.43 Total: 29.20 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: 3.60 Total: -24.04 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -4.47 Total: -74.86 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -1.93 Total: -34.61 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -58.34 -0.35 -58.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829974595.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.344 kcal (2) G-P(sol) polarization free energy of solvation -58.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds