Wall clock time and date at job start Sun Mar 29 2020 22:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47574 * 2 1 4 4 C 1.53001 * 109.47081 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46741 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46741 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.47133 * 179.97438 * 6 5 4 8 8 C 1.48539 * 110.99941 * 307.39783 * 7 6 5 9 9 C 1.54937 * 103.22274 * 200.27849 * 8 7 6 10 10 C 1.54597 * 102.92462 * 37.41216 * 9 8 7 11 11 O 1.42896 * 110.39284 * 97.00049 * 10 9 8 12 12 C 1.50700 * 110.30708 * 219.12443 * 10 9 8 13 13 H 1.07999 * 119.99988 * 115.71457 * 12 10 9 14 14 C 1.37885 * 120.00047 * 295.71637 * 12 10 9 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 10 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47163 * 59.99902 * 16 14 12 18 18 H 1.48495 * 109.47159 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47290 * 299.99897 * 16 14 12 20 20 C 1.47901 * 111.00273 * 189.99988 * 7 6 5 21 21 H 1.08991 * 109.47707 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47261 * 300.00684 * 1 2 3 23 23 H 1.09001 * 109.46871 * 59.99949 * 1 2 3 24 24 H 1.08999 * 109.47261 * 239.99316 * 2 1 3 25 25 H 1.09001 * 109.46871 * 120.00051 * 2 1 3 26 26 H 1.08999 * 109.46871 * 59.99509 * 3 2 1 27 27 H 1.09001 * 109.47064 * 299.99933 * 3 2 1 28 28 H 1.08991 * 109.47206 * 59.99567 * 4 3 2 29 29 H 1.09000 * 109.46692 * 299.99579 * 4 3 2 30 30 H 1.08997 * 109.47323 * 60.00296 * 5 4 3 31 31 H 1.09001 * 109.47107 * 299.99748 * 5 4 3 32 32 H 1.08999 * 109.47671 * 59.99841 * 6 5 4 33 33 H 1.09001 * 109.47115 * 299.99743 * 6 5 4 34 34 H 1.09000 * 110.66156 * 318.70740 * 8 7 6 35 35 H 1.08998 * 110.66681 * 81.67246 * 8 7 6 36 36 H 1.09004 * 110.72480 * 279.04903 * 9 8 7 37 37 H 1.09005 * 110.71803 * 155.77119 * 9 8 7 38 38 H 0.96703 * 114.00355 * 62.84440 * 11 10 9 39 39 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 40 40 H 1.08997 * 109.91359 * 26.48539 * 20 7 6 41 41 H 1.09004 * 109.91438 * 265.19447 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0801 2.8848 0.0000 6 6 5.6101 2.8847 -0.0013 7 7 6.0999 4.2696 -0.0013 8 6 5.4824 5.0526 -1.1022 9 6 6.4574 6.2435 -1.2802 10 6 7.8418 5.5939 -1.0535 11 8 8.4475 5.2629 -2.3047 12 6 8.7337 6.5231 -0.2711 13 1 9.0747 6.2420 0.7143 14 6 9.1145 7.7323 -0.8135 15 7 8.7037 8.0723 -2.0157 16 14 10.2207 8.8838 0.1560 17 1 11.5066 8.2025 0.4518 18 1 10.4821 10.1081 -0.6427 19 1 9.5533 9.2560 1.4293 20 6 7.5584 4.3161 -0.2423 21 1 -0.3634 -1.0275 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5139 0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6768 1.9563 -0.8900 28 1 3.9330 0.9286 -0.8907 29 1 3.9337 0.9284 0.8892 30 1 3.7172 3.3981 0.8904 31 1 3.7164 3.3992 -0.8896 32 1 5.9727 2.3715 -0.8919 33 1 5.9742 2.3702 0.8880 34 1 5.4303 4.4584 -2.0145 35 1 4.4909 5.4032 -0.8158 36 1 6.2657 7.0139 -0.5333 37 1 6.3844 6.6545 -2.2872 38 1 8.6296 6.0275 -2.8681 39 1 8.9713 8.9231 -2.3970 40 1 7.8690 3.4391 -0.8101 41 1 8.0907 4.3540 0.7082 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829974597.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:50 Heat of formation + Delta-G solvation = -78.640871 kcal Electronic energy + Delta-G solvation = -17705.866165 eV Core-core repulsion = 15005.349215 eV Total energy + Delta-G solvation = -2700.516950 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.50736 -36.47355 -34.88300 -32.57232 -32.03010 -29.73943 -28.12768 -27.01735 -24.52031 -23.11313 -21.47887 -21.04691 -19.73440 -19.23046 -17.04808 -15.99989 -15.27008 -14.98527 -14.70377 -14.21751 -13.97657 -13.85820 -13.42212 -13.08265 -12.65282 -12.21572 -12.17380 -11.92554 -11.66569 -11.39538 -11.25558 -11.14484 -10.96898 -10.78014 -10.67889 -10.51776 -10.50167 -10.40569 -10.33092 -10.17040 -9.84915 -9.11015 -8.53694 -8.05851 -7.70080 -6.15672 -4.21378 3.28647 3.32711 3.36313 4.35446 4.49216 4.78913 4.83963 4.94845 5.11179 5.14785 5.30557 5.38949 5.49018 5.62289 5.71825 5.75101 5.80137 5.82708 5.93785 5.96774 6.02719 6.06218 6.14495 6.16174 6.24318 6.29397 6.42827 6.48358 6.53371 6.58078 6.98162 7.11918 7.35097 7.56398 7.72469 7.79791 7.90937 8.21781 8.79752 9.45313 9.57622 10.92163 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.058710 B = 0.003956 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.804788 B = 7077.047068 C = 7111.666503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.118 4.118 5 C -0.118 4.118 6 C 0.047 3.953 7 N -0.516 5.516 8 C 0.033 3.967 9 C -0.119 4.119 10 C 0.243 3.757 11 O -0.595 6.595 12 C -0.527 4.527 13 H 0.061 0.939 14 C 0.067 3.933 15 N -0.901 5.901 16 Si 0.901 3.099 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.054 3.946 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.028 0.972 33 H 0.067 0.933 34 H 0.031 0.969 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.383 0.617 39 H 0.267 0.733 40 H 0.035 0.965 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.665 -10.733 2.328 16.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.156 4.156 5 C -0.156 4.156 6 C -0.082 4.082 7 N -0.240 5.240 8 C -0.095 4.095 9 C -0.158 4.158 10 C 0.203 3.797 11 O -0.405 6.405 12 C -0.566 4.566 13 H 0.079 0.921 14 C -0.134 4.134 15 N -0.541 5.541 16 Si 0.729 3.271 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.074 4.074 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.234 0.766 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.821 -10.982 2.946 16.402 hybrid contribution 0.816 0.898 -0.528 1.323 sum -11.005 -10.083 2.419 15.121 Atomic orbital electron populations 1.21781 0.96128 1.01338 1.01790 1.21546 0.95632 0.97263 1.01876 1.21618 0.95654 0.96374 1.02066 1.21573 0.95061 0.97157 1.01838 1.21645 0.95213 0.96152 1.02561 1.22286 0.94800 0.90968 1.00135 1.64838 1.05588 1.10067 1.43528 1.23268 0.98387 0.96165 0.91666 1.22990 0.95912 0.95669 1.01243 1.19353 0.89348 0.89091 0.81927 1.86085 1.83643 1.39119 1.31672 1.21679 1.30294 1.01989 1.02603 0.92054 1.25019 0.95645 0.97652 0.95102 1.69614 1.45584 1.23446 1.15497 0.86511 0.80962 0.79752 0.79913 1.20169 1.21242 1.20113 1.22870 0.86958 0.98151 0.99408 0.93008 0.92805 0.92803 0.92175 0.92154 0.92017 0.92108 0.92275 0.92098 0.91358 0.91965 0.95370 0.91440 0.95043 0.91780 0.91447 0.91832 0.76574 0.92340 0.94711 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.13 -1.07 5.93 -26.73 -0.16 -1.23 16 3 C -0.12 -1.16 5.21 -26.73 -0.14 -1.30 16 4 C -0.12 -1.30 5.21 -26.73 -0.14 -1.44 16 5 C -0.12 -1.60 4.87 -26.73 -0.13 -1.73 16 6 C 0.05 0.76 5.03 -3.82 -0.02 0.75 16 7 N -0.52 -10.38 5.40 -230.45 -1.24 -11.62 16 8 C 0.03 0.66 5.11 -1.89 -0.01 0.65 16 9 C -0.12 -2.85 5.50 -24.87 -0.14 -2.99 16 10 C 0.24 6.23 0.99 -90.42 -0.09 6.14 16 11 O -0.60 -16.00 12.92 -35.23 -0.46 -16.45 16 12 C -0.53 -14.53 8.10 -34.44 -0.28 -14.80 16 13 H 0.06 1.68 7.34 -52.49 -0.39 1.30 16 14 C 0.07 1.82 5.27 -17.82 -0.09 1.72 16 15 N -0.90 -24.51 10.89 55.43 0.60 -23.90 16 16 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 20 C 0.05 1.22 6.17 -2.76 -0.02 1.21 16 21 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.87 6.79 -51.93 -0.35 0.52 16 32 H 0.03 0.47 7.81 -51.93 -0.41 0.07 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.03 0.63 8.00 -51.93 -0.42 0.21 16 35 H 0.06 1.17 7.65 -51.93 -0.40 0.77 16 36 H 0.07 1.70 7.86 -51.93 -0.41 1.29 16 37 H 0.06 1.56 8.06 -51.93 -0.42 1.14 16 38 H 0.38 10.40 7.07 45.56 0.32 10.72 16 39 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.03 0.79 7.39 -51.93 -0.38 0.40 16 41 H 0.08 1.77 7.39 -51.93 -0.38 1.38 16 LS Contribution 320.60 15.07 4.83 4.83 Total: -1.00 -27.64 320.60 -9.14 -36.79 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -7.01 Total: 8.13 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -0.84 Total: -13.84 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: -0.64 Total: -35.52 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.46 Total: -16.45 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.64 -9.14 -36.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829974597.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.854 kcal (2) G-P(sol) polarization free energy of solvation -27.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds