Wall clock time and date at job start Sun Mar 29 2020 22:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47574 * 2 1 4 4 C 1.53001 * 109.47081 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46741 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46741 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.47133 * 179.97438 * 6 5 4 8 8 C 1.48539 * 110.99941 * 307.39783 * 7 6 5 9 9 C 1.54937 * 103.22274 * 200.27849 * 8 7 6 10 10 C 1.54597 * 102.92462 * 37.41216 * 9 8 7 11 11 O 1.42896 * 110.39284 * 97.00049 * 10 9 8 12 12 C 1.50700 * 110.30708 * 219.12443 * 10 9 8 13 13 H 1.07999 * 119.99988 * 115.71457 * 12 10 9 14 14 C 1.37885 * 120.00047 * 295.71637 * 12 10 9 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 10 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47163 * 59.99902 * 16 14 12 18 18 H 1.48495 * 109.47159 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47290 * 299.99897 * 16 14 12 20 20 C 1.47901 * 111.00273 * 189.99988 * 7 6 5 21 21 H 1.08991 * 109.47707 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47261 * 300.00684 * 1 2 3 23 23 H 1.09001 * 109.46871 * 59.99949 * 1 2 3 24 24 H 1.08999 * 109.47261 * 239.99316 * 2 1 3 25 25 H 1.09001 * 109.46871 * 120.00051 * 2 1 3 26 26 H 1.08999 * 109.46871 * 59.99509 * 3 2 1 27 27 H 1.09001 * 109.47064 * 299.99933 * 3 2 1 28 28 H 1.08991 * 109.47206 * 59.99567 * 4 3 2 29 29 H 1.09000 * 109.46692 * 299.99579 * 4 3 2 30 30 H 1.08997 * 109.47323 * 60.00296 * 5 4 3 31 31 H 1.09001 * 109.47107 * 299.99748 * 5 4 3 32 32 H 1.08999 * 109.47671 * 59.99841 * 6 5 4 33 33 H 1.09001 * 109.47115 * 299.99743 * 6 5 4 34 34 H 1.09000 * 110.66156 * 318.70740 * 8 7 6 35 35 H 1.08998 * 110.66681 * 81.67246 * 8 7 6 36 36 H 1.09004 * 110.72480 * 279.04903 * 9 8 7 37 37 H 1.09005 * 110.71803 * 155.77119 * 9 8 7 38 38 H 0.96703 * 114.00355 * 62.84440 * 11 10 9 39 39 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 40 40 H 1.08997 * 109.91359 * 26.48539 * 20 7 6 41 41 H 1.09004 * 109.91438 * 265.19447 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0801 2.8848 0.0000 6 6 5.6101 2.8847 -0.0013 7 7 6.0999 4.2696 -0.0013 8 6 5.4824 5.0526 -1.1022 9 6 6.4574 6.2435 -1.2802 10 6 7.8418 5.5939 -1.0535 11 8 8.4475 5.2629 -2.3047 12 6 8.7337 6.5231 -0.2711 13 1 9.0747 6.2420 0.7143 14 6 9.1145 7.7323 -0.8135 15 7 8.7037 8.0723 -2.0157 16 14 10.2207 8.8838 0.1560 17 1 11.5066 8.2025 0.4518 18 1 10.4821 10.1081 -0.6427 19 1 9.5533 9.2560 1.4293 20 6 7.5584 4.3161 -0.2423 21 1 -0.3634 -1.0275 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5139 0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6768 1.9563 -0.8900 28 1 3.9330 0.9286 -0.8907 29 1 3.9337 0.9284 0.8892 30 1 3.7172 3.3981 0.8904 31 1 3.7164 3.3992 -0.8896 32 1 5.9727 2.3715 -0.8919 33 1 5.9742 2.3702 0.8880 34 1 5.4303 4.4584 -2.0145 35 1 4.4909 5.4032 -0.8158 36 1 6.2657 7.0139 -0.5333 37 1 6.3844 6.6545 -2.2872 38 1 8.6296 6.0275 -2.8681 39 1 8.9713 8.9231 -2.3970 40 1 7.8690 3.4391 -0.8101 41 1 8.0907 4.3540 0.7082 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829974597.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:50 Heat of formation + Delta-G solvation = -96.347162 kcal Electronic energy + Delta-G solvation = -17706.633968 eV Core-core repulsion = 15005.349215 eV Total energy + Delta-G solvation = -2701.284752 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.22306 -37.62554 -36.39622 -34.13396 -33.75343 -31.20019 -29.90957 -28.36137 -26.26045 -24.41205 -22.72142 -21.84167 -21.27594 -21.03667 -19.11512 -17.05149 -16.92063 -16.79902 -16.20777 -15.80991 -15.48590 -14.81709 -14.70919 -14.35831 -13.98480 -13.77127 -13.54153 -13.48295 -13.20642 -12.83486 -12.74539 -12.45849 -12.38102 -12.31293 -12.14375 -12.00848 -11.92472 -11.72615 -11.54337 -11.36056 -11.30878 -11.03083 -10.59718 -10.10616 -9.32359 -8.21469 -6.35175 1.42279 1.42894 1.51027 2.39641 2.97990 3.14444 3.78486 3.95612 4.02188 4.13071 4.21894 4.26348 4.31824 4.41149 4.49835 4.55160 4.58549 4.63083 4.73516 4.82462 4.88838 4.93129 4.97523 5.08329 5.11143 5.15408 5.22799 5.26660 5.29111 5.40609 5.42345 5.50902 5.55334 5.59299 5.76734 5.99070 6.15526 6.26921 6.68717 7.34448 7.44495 8.84668 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.058710 B = 0.003956 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.804788 B = 7077.047068 C = 7111.666503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.117 4.117 4 C -0.112 4.112 5 C -0.110 4.110 6 C 0.045 3.955 7 N -0.520 5.520 8 C 0.045 3.955 9 C -0.113 4.113 10 C 0.225 3.775 11 O -0.603 6.603 12 C -0.556 4.556 13 H 0.054 0.946 14 C 0.026 3.974 15 N -0.916 5.916 16 Si 0.962 3.038 17 H -0.275 1.275 18 H -0.280 1.280 19 H -0.272 1.272 20 C 0.060 3.940 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.025 0.975 33 H 0.078 0.922 34 H 0.035 0.965 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.378 0.622 39 H 0.269 0.731 40 H 0.032 0.968 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.583 -11.339 3.010 17.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.150 4.150 5 C -0.148 4.148 6 C -0.083 4.083 7 N -0.244 5.244 8 C -0.082 4.082 9 C -0.152 4.152 10 C 0.186 3.814 11 O -0.412 6.412 12 C -0.594 4.594 13 H 0.072 0.928 14 C -0.174 4.174 15 N -0.556 5.556 16 Si 0.788 3.212 17 H -0.200 1.200 18 H -0.205 1.205 19 H -0.197 1.197 20 C -0.068 4.068 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.106 0.894 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.228 0.772 39 H 0.079 0.921 40 H 0.051 0.949 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.754 -11.603 3.630 17.620 hybrid contribution 1.106 1.071 -0.752 1.714 sum -11.647 -10.533 2.877 15.965 Atomic orbital electron populations 1.21781 0.95475 1.01925 1.01860 1.21534 0.96224 0.96400 1.02081 1.21588 0.94587 0.97242 1.02038 1.21519 0.95956 0.95338 1.02202 1.21585 0.92929 0.97926 1.02340 1.22416 0.96728 0.88637 1.00471 1.64834 1.03840 1.12536 1.43241 1.23168 0.98395 0.94600 0.92057 1.22786 0.96303 0.96477 0.99623 1.19631 0.89792 0.90510 0.81505 1.86076 1.83992 1.38968 1.32207 1.21936 1.31528 1.03135 1.02776 0.92805 1.25728 0.96743 0.98873 0.96058 1.69695 1.45869 1.23744 1.16281 0.85553 0.79087 0.77918 0.78691 1.19995 1.20477 1.19741 1.22712 0.88931 0.96632 0.98487 0.92206 0.92651 0.92846 0.92138 0.91812 0.91882 0.92333 0.92248 0.91423 0.91354 0.92356 0.95714 0.90362 0.94703 0.89382 0.93349 0.93286 0.77185 0.92118 0.94937 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 71.98 0.71 -1.33 16 2 C -0.12 -1.87 5.93 30.59 0.18 -1.69 16 3 C -0.12 -2.02 5.21 30.59 0.16 -1.86 16 4 C -0.11 -2.22 5.21 30.59 0.16 -2.06 16 5 C -0.11 -2.74 4.87 30.59 0.15 -2.60 16 6 C 0.05 1.41 5.03 86.30 0.43 1.84 16 7 N -0.52 -20.35 5.40 -883.02 -4.76 -25.11 16 8 C 0.05 1.78 5.11 86.65 0.44 2.22 16 9 C -0.11 -5.44 5.50 31.80 0.17 -5.26 16 10 C 0.23 11.69 0.99 -10.66 -0.01 11.68 16 11 O -0.60 -32.90 12.92 -148.98 -1.93 -34.83 16 12 C -0.56 -30.96 8.10 25.60 0.21 -30.75 16 13 H 0.05 2.99 7.34 -2.91 -0.02 2.97 16 14 C 0.03 1.40 5.27 84.66 0.45 1.84 16 15 N -0.92 -50.11 10.89 21.45 0.23 -49.87 16 16 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 20 C 0.06 2.75 6.17 86.44 0.53 3.28 16 21 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 22 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 23 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 1.50 6.79 -2.39 -0.02 1.49 16 32 H 0.02 0.79 7.81 -2.39 -0.02 0.77 16 33 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.03 1.35 8.00 -2.39 -0.02 1.33 16 35 H 0.09 3.04 7.65 -2.39 -0.02 3.02 16 36 H 0.05 2.46 7.86 -2.38 -0.02 2.44 16 37 H 0.05 2.45 8.06 -2.38 -0.02 2.43 16 38 H 0.38 20.97 7.07 -74.06 -0.52 20.45 16 39 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 40 H 0.03 1.47 7.39 -2.39 -0.02 1.45 16 41 H 0.07 3.30 7.39 -2.38 -0.02 3.28 16 Total: -1.00 -57.95 320.60 -0.39 -58.34 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.45 Total: 30.96 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 3.59 Total: -24.68 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: -4.53 Total: -74.98 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -1.93 Total: -34.83 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -57.95 -0.39 -58.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829974597.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.007 kcal (2) G-P(sol) polarization free energy of solvation -57.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds