Wall clock time and date at job start Sun Mar 29 2020 22:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47024 * 2 1 4 4 N 1.46906 * 109.47378 * 119.99833 * 2 1 3 5 5 C 1.46895 * 110.99789 * 300.00188 * 4 2 1 6 6 C 1.53004 * 109.47035 * 179.97438 * 5 4 2 7 7 C 1.50692 * 109.47453 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00058 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00172 * 180.02562 * 7 6 5 10 10 N 1.31506 * 119.99913 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99709 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47101 * 60.00163 * 11 9 7 13 13 H 1.48504 * 109.46703 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47283 * 299.99821 * 11 9 7 15 15 C 1.53002 * 109.47392 * 240.00071 * 2 1 3 16 16 H 1.08999 * 109.48397 * 180.02562 * 15 2 1 17 17 C 1.53090 * 109.47922 * 300.05698 * 15 2 1 18 18 C 1.53177 * 109.16471 * 177.59271 * 17 15 2 19 19 C 1.53185 * 109.03382 * 303.01641 * 18 17 15 20 20 C 1.53092 * 109.16201 * 56.98012 * 19 18 17 21 21 O 1.42900 * 109.41564 * 302.39222 * 20 19 18 22 22 H 1.09004 * 109.46998 * 299.99586 * 1 2 3 23 23 H 1.08992 * 109.47715 * 60.00117 * 1 2 3 24 24 H 1.09004 * 109.46862 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47045 * 299.99984 * 3 2 1 27 27 H 1.09000 * 109.47140 * 59.99892 * 3 2 1 28 28 H 1.00899 * 110.99484 * 63.95920 * 4 2 1 29 29 H 1.08996 * 109.47424 * 299.99656 * 5 4 2 30 30 H 1.09002 * 109.47411 * 60.00282 * 5 4 2 31 31 H 1.09007 * 109.47219 * 300.00436 * 6 5 4 32 32 H 1.09005 * 109.47157 * 59.99991 * 6 5 4 33 33 H 0.96998 * 119.99843 * 180.02562 * 10 9 7 34 34 H 1.09009 * 109.52381 * 297.49307 * 17 15 2 35 35 H 1.08996 * 109.52382 * 57.68016 * 17 15 2 36 36 H 1.09000 * 109.54457 * 183.15650 * 18 17 15 37 37 H 1.08994 * 109.54796 * 62.88357 * 18 17 15 38 38 H 1.08999 * 109.52173 * 297.07868 * 19 18 17 39 39 H 1.08997 * 109.57572 * 176.91864 * 19 18 17 40 40 H 1.08999 * 109.47816 * 182.40894 * 20 19 18 41 41 H 1.09002 * 109.48958 * 62.37797 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.5486 -0.0263 2.4210 6 6 2.0772 -0.7749 3.6463 7 6 1.5936 -0.0920 4.8995 8 1 0.9710 0.7878 4.8292 9 6 1.9458 -0.5902 6.1360 10 7 2.7043 -1.6610 6.2216 11 14 1.3467 0.2569 7.6894 12 1 -0.1381 0.2566 7.7122 13 1 1.8597 -0.4697 8.8786 14 1 1.8419 1.6567 7.7123 15 6 2.0400 -0.7212 -1.2492 16 1 3.1300 -0.7217 -1.2492 17 6 1.5287 -2.1642 -1.2502 18 6 1.9931 -2.8614 -2.5326 19 6 1.4927 -2.0666 -3.7427 20 6 2.0054 -0.6274 -3.6455 21 8 1.5637 -0.0478 -2.4162 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1299 1.4425 0.0005 26 1 1.6765 1.9563 -0.8900 27 1 1.6765 1.9563 0.8900 28 1 1.7503 -1.6648 1.1909 29 1 1.9121 1.0011 2.4379 30 1 0.4588 -0.0266 2.4379 31 1 1.7135 -1.8023 3.6293 32 1 3.1672 -0.7750 3.6298 33 1 2.9517 -2.0117 7.0915 34 1 1.9269 -2.6924 -0.3838 35 1 0.4395 -2.1647 -1.2092 36 1 1.5857 -3.8719 -2.5663 37 1 3.0820 -2.9052 -2.5500 38 1 0.4027 -2.0651 -3.7521 39 1 1.8642 -2.5245 -4.6594 40 1 1.6171 -0.0460 -4.4817 41 1 3.0949 -0.6265 -3.6769 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879409063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:21 Heat of formation + Delta-G solvation = -87.572533 kcal Electronic energy + Delta-G solvation = -18235.177337 eV Core-core repulsion = 15534.273082 eV Total energy + Delta-G solvation = -2700.904256 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.94276 -38.41716 -35.48333 -34.55766 -33.36990 -31.02700 -29.84267 -28.26112 -26.66893 -25.45623 -24.47704 -22.44187 -21.24936 -20.05465 -18.44837 -17.50569 -17.04180 -16.52225 -16.20491 -15.78877 -15.56999 -15.40543 -14.92885 -14.52499 -14.39911 -14.11516 -13.62969 -13.46096 -13.21602 -13.08603 -12.75477 -12.72706 -12.58232 -12.42693 -12.24091 -12.00581 -11.81596 -11.66587 -11.47855 -11.34278 -11.21013 -11.00394 -10.54335 -10.28379 -9.24655 -8.19107 -6.30349 1.40842 1.44072 1.51924 2.40730 2.67695 3.14392 3.52123 3.70629 3.81796 3.97692 4.04545 4.14225 4.21026 4.36271 4.40366 4.51078 4.62279 4.65562 4.71335 4.80123 4.84377 4.89916 4.93532 5.00224 5.04171 5.07800 5.10165 5.14939 5.19549 5.32192 5.35014 5.45170 5.49071 5.70056 5.81907 6.16743 6.29646 6.34603 6.57392 6.86684 7.38773 8.92893 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047537 B = 0.004558 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.869025 B = 6141.337818 C = 6445.049372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.115 3.885 3 C -0.131 4.131 4 N -0.683 5.683 5 C 0.084 3.916 6 C 0.033 3.967 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.002 3.998 10 N -0.931 5.931 11 Si 0.966 3.034 12 H -0.267 1.267 13 H -0.282 1.282 14 H -0.267 1.267 15 C 0.115 3.885 16 H 0.055 0.945 17 C -0.156 4.156 18 C -0.121 4.121 19 C -0.151 4.151 20 C 0.054 3.946 21 O -0.389 6.389 22 H 0.047 0.953 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.337 0.663 29 H 0.061 0.939 30 H 0.023 0.977 31 H -0.010 1.010 32 H -0.007 1.007 33 H 0.264 0.736 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.987 0.560 -20.196 20.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.024 3.976 3 C -0.188 4.188 4 N -0.316 5.316 5 C -0.044 4.044 6 C -0.005 4.005 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.196 4.196 10 N -0.571 5.571 11 Si 0.790 3.210 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.192 1.192 15 C 0.057 3.943 16 H 0.073 0.927 17 C -0.193 4.193 18 C -0.158 4.158 19 C -0.188 4.188 20 C -0.022 4.022 21 O -0.308 6.308 22 H 0.066 0.934 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.157 0.843 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.009 0.991 32 H 0.012 0.988 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.126 0.874 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.410 0.937 -20.084 20.250 hybrid contribution -0.815 -0.404 1.129 1.450 sum -3.225 0.533 -18.955 19.235 Atomic orbital electron populations 1.22428 0.96428 1.01944 1.02071 1.20838 0.93070 0.94768 0.88947 1.21773 1.00979 0.94414 1.01671 1.60634 1.63718 1.06155 1.01108 1.21816 0.96191 0.98007 0.88415 1.18915 0.95110 0.94390 0.92050 1.21575 1.31767 1.12740 0.92202 0.92240 1.25950 0.95116 0.95648 1.02868 1.70097 1.37602 1.23932 1.25508 0.85498 0.78909 0.78688 0.77926 1.19165 1.20780 1.19198 1.21760 0.96964 0.91002 0.84599 0.92729 1.22286 1.01794 0.95905 0.99343 1.21587 1.01080 0.99434 0.93708 1.22163 1.01680 0.95999 0.98998 1.22765 0.98878 0.94303 0.86272 1.87851 1.74415 1.54678 1.13843 0.93397 0.90977 0.92536 0.92893 0.90849 0.93347 0.84338 0.92110 0.95861 0.99146 0.98811 0.92763 0.91217 0.91184 0.90670 0.91694 0.91473 0.89093 0.87380 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.84 7.73 71.98 0.56 -4.28 16 2 C 0.11 3.43 0.56 3.52 0.00 3.44 16 3 C -0.13 -3.89 8.09 71.98 0.58 -3.31 16 4 N -0.68 -24.73 6.07 -470.19 -2.85 -27.58 16 5 C 0.08 3.62 4.84 86.31 0.42 4.03 16 6 C 0.03 1.78 5.23 29.85 0.16 1.94 16 7 C -0.54 -31.50 9.11 25.60 0.23 -31.27 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.00 0.13 5.46 84.66 0.46 0.59 16 10 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 11 Si 0.97 44.66 29.54 68.60 2.03 46.68 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 15 C 0.11 2.98 2.09 30.63 0.06 3.04 16 16 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 17 C -0.16 -3.60 4.72 30.68 0.14 -3.46 16 18 C -0.12 -2.19 6.03 30.72 0.19 -2.00 16 19 C -0.15 -2.32 6.14 30.69 0.19 -2.14 16 20 C 0.05 0.94 6.84 72.01 0.49 1.43 16 21 O -0.39 -9.36 9.06 -148.98 -1.35 -10.71 16 22 H 0.05 1.47 6.40 -2.39 -0.02 1.46 16 23 H 0.07 1.90 7.68 -2.39 -0.02 1.88 16 24 H 0.06 1.55 6.38 -2.38 -0.02 1.53 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 1.96 7.68 -2.39 -0.02 1.94 16 27 H 0.05 1.52 6.40 -2.39 -0.02 1.51 16 28 H 0.34 11.90 6.82 -89.69 -0.61 11.29 16 29 H 0.06 2.63 6.30 -2.39 -0.02 2.61 16 30 H 0.02 0.99 6.30 -2.39 -0.02 0.97 16 31 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 32 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 33 H 0.26 15.26 8.31 -92.71 -0.77 14.48 16 34 H 0.07 1.74 6.71 -2.38 -0.02 1.73 16 35 H 0.07 1.65 6.31 -2.39 -0.02 1.63 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 39 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -63.88 310.59 1.97 -61.91 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.38 Total: 18.78 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 3.49 Total: -31.98 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -2.57 Total: -84.67 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -1.35 Total: -10.71 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -63.88 1.97 -61.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879409063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.666 kcal (2) G-P(sol) polarization free energy of solvation -63.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds