Wall clock time and date at job start Sun Mar 29 2020 22:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47044 * 2 1 4 4 C 1.52997 * 109.46982 * 240.00123 * 2 1 3 5 5 C 1.50699 * 109.47365 * 60.00290 * 4 2 1 6 6 H 1.08007 * 120.00189 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00480 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99854 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00453 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47448 * 89.99549 * 9 7 5 11 11 H 1.48506 * 109.47280 * 209.99989 * 9 7 5 12 12 H 1.48502 * 109.46862 * 329.99483 * 9 7 5 13 13 C 1.52998 * 109.46873 * 120.00288 * 2 1 3 14 14 N 1.46903 * 109.47062 * 299.99802 * 13 2 1 15 15 C 1.46899 * 110.99701 * 180.02562 * 14 13 2 16 16 H 1.09002 * 109.47432 * 34.99939 * 15 14 13 17 17 C 1.52999 * 109.47123 * 274.99985 * 15 14 13 18 18 O 1.42903 * 109.47256 * 295.00582 * 17 15 14 19 19 C 1.53002 * 109.46982 * 155.00191 * 15 14 13 20 20 C 1.52998 * 117.49660 * 248.74425 * 19 15 14 21 21 C 1.52997 * 117.49660 * 180.08406 * 19 15 14 22 22 H 1.08996 * 109.46871 * 300.00079 * 1 2 3 23 23 H 1.09002 * 109.46955 * 60.00039 * 1 2 3 24 24 H 1.08998 * 109.46977 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47622 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47630 * 300.00421 * 3 2 1 27 27 H 1.09004 * 109.46974 * 59.99696 * 3 2 1 28 28 H 1.09004 * 109.47269 * 179.97438 * 4 2 1 29 29 H 1.08998 * 109.47711 * 300.00098 * 4 2 1 30 30 H 0.96999 * 120.00140 * 180.02562 * 8 7 5 31 31 H 1.09007 * 109.46847 * 180.02562 * 13 2 1 32 32 H 1.08997 * 109.47503 * 60.00244 * 13 2 1 33 33 H 1.00897 * 110.99603 * 56.05138 * 14 13 2 34 34 H 1.08997 * 109.47286 * 175.00142 * 17 15 14 35 35 H 1.09008 * 109.47201 * 54.99922 * 17 15 14 36 36 H 0.96700 * 114.00311 * 180.02562 * 18 17 15 37 37 H 1.08998 * 115.54662 * 34.41373 * 19 15 14 38 38 H 1.09003 * 117.50056 * 359.97438 * 20 19 15 39 39 H 1.09004 * 117.49574 * 145.02002 * 20 19 15 40 40 H 1.09004 * 117.49425 * 214.97398 * 21 19 15 41 41 H 1.08993 * 117.50277 * 359.97438 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5378 -0.0108 -2.4797 6 1 0.9165 0.8672 -2.3807 7 6 1.8704 -0.4821 -3.7320 8 7 2.6264 -1.5514 -3.8527 9 14 1.2472 0.3981 -5.2572 10 1 2.2251 1.4398 -5.6619 11 1 1.0818 -0.5813 -6.3612 12 1 -0.0609 1.0356 -4.9610 13 6 2.0400 -0.7213 1.2492 14 7 1.5503 -0.0288 2.4487 15 6 2.0218 -0.6947 3.6702 16 1 3.0239 -1.0905 3.5048 17 6 1.0728 -1.8412 4.0248 18 8 -0.2124 -1.3110 4.3552 19 6 2.0553 0.3138 4.8203 20 6 3.4269 0.7275 5.3574 21 6 2.5241 -0.1888 6.1872 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4426 0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 3.1301 -0.7208 -1.2495 29 1 1.6767 -1.7489 -1.2494 30 1 2.8608 -1.8828 -4.7337 31 1 3.1301 -0.7209 1.2494 32 1 1.6767 -1.7490 1.2492 33 1 0.5438 0.0412 2.4401 34 1 1.4697 -2.3905 4.8786 35 1 0.9801 -2.5133 3.1716 36 1 -0.8663 -1.9830 4.5914 37 1 1.2717 1.0713 4.8042 38 1 4.3054 0.2809 4.8917 39 1 3.5455 1.7571 5.6951 40 1 2.0492 0.2384 7.0705 41 1 2.8083 -1.2380 6.2673 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883002297.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:08 Heat of formation + Delta-G solvation = -45.396858 kcal Electronic energy + Delta-G solvation = -18062.777436 eV Core-core repulsion = 15363.702055 eV Total energy + Delta-G solvation = -2699.075381 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.90526 -36.99301 -36.14225 -33.70743 -32.07143 -28.40960 -26.76575 -26.26294 -25.18607 -23.46582 -22.27197 -21.96576 -20.02538 -17.83274 -17.34182 -16.19290 -16.05226 -15.18165 -14.79805 -14.63696 -14.35744 -13.61614 -13.32171 -13.13139 -12.58969 -12.29837 -12.05203 -11.93363 -11.84084 -11.54833 -11.08567 -10.88704 -10.85497 -10.73807 -10.45513 -10.37332 -10.19027 -10.09194 -10.03645 -9.93013 -9.62574 -8.96406 -8.78940 -8.29049 -7.96407 -5.93786 -3.93592 3.35361 3.41699 3.44770 3.80664 4.14435 4.48792 4.56521 4.77249 4.91291 5.09004 5.25497 5.34495 5.42131 5.47765 5.54960 5.62054 5.69030 5.79328 5.85912 5.95784 6.05018 6.10524 6.29900 6.36500 6.40708 6.57645 6.73125 6.85681 6.88998 7.26215 7.30589 7.31723 7.45826 7.56010 7.72891 7.82322 7.90270 8.06852 8.51800 9.11827 9.69105 11.17968 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.041880 B = 0.004756 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.417869 B = 5886.164573 C = 6035.782645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.058 4.058 3 C -0.116 4.116 4 C 0.034 3.966 5 C -0.505 4.505 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.069 3.931 14 N -0.676 5.676 15 C 0.118 3.882 16 H 0.085 0.915 17 C 0.047 3.953 18 O -0.564 6.564 19 C -0.116 4.116 20 C -0.180 4.180 21 C -0.185 4.185 22 H 0.034 0.966 23 H 0.063 0.937 24 H 0.038 0.962 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.014 0.986 29 H 0.012 0.988 30 H 0.258 0.742 31 H 0.064 0.936 32 H 0.020 0.980 33 H 0.349 0.651 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.375 0.625 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.149 0.194 17.591 17.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.058 4.058 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.060 4.060 14 N -0.308 5.308 15 C 0.008 3.992 16 H 0.103 0.897 17 C -0.033 4.033 18 O -0.368 6.368 19 C -0.134 4.134 20 C -0.217 4.217 21 C -0.223 4.223 22 H 0.053 0.947 23 H 0.082 0.918 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.033 0.967 29 H 0.030 0.970 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.170 0.830 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.221 0.779 37 H 0.125 0.875 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.260 1.116 17.310 17.392 hybrid contribution -1.017 -1.110 -0.822 1.715 sum -2.277 0.007 16.488 16.645 Atomic orbital electron populations 1.21760 0.96056 1.00284 1.00448 1.20615 0.94749 0.96139 0.94304 1.21594 0.99718 0.95809 1.00183 1.19126 0.96077 0.94939 0.90248 1.21252 1.30670 1.11838 0.90619 0.92282 1.25013 0.95449 0.95105 0.99036 1.69971 1.37438 1.23235 1.23231 0.86665 0.79256 0.79417 0.83092 1.20780 1.21423 1.19934 1.22158 0.99493 0.94679 0.89645 1.60522 1.17410 1.52643 1.00201 1.21222 0.96935 0.90895 0.90196 0.89700 1.22944 0.84942 0.96829 0.98558 1.86478 1.21578 1.37701 1.91065 1.22006 0.97640 1.01153 0.92651 1.22997 0.94599 0.99876 1.04237 1.22907 1.04836 0.99393 0.95114 0.94660 0.91799 0.94249 0.94220 0.92761 0.93810 0.96716 0.96994 0.93212 0.91737 0.96156 0.83041 0.93771 0.93658 0.77904 0.87520 0.89056 0.89126 0.89211 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 7.89 37.16 0.29 -2.18 16 2 C -0.06 -1.18 0.60 -154.51 -0.09 -1.27 16 3 C -0.12 -2.31 8.06 37.16 0.30 -2.01 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.99 7.65 -34.44 -0.26 -14.25 16 6 H 0.06 1.60 5.68 -52.48 -0.30 1.30 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.07 1.22 4.44 -3.82 -0.02 1.20 16 14 N -0.68 -10.34 5.46 -106.72 -0.58 -10.92 16 15 C 0.12 1.53 2.64 -67.71 -0.18 1.35 16 16 H 0.08 1.10 7.56 -51.93 -0.39 0.71 16 17 C 0.05 0.53 6.48 37.16 0.24 0.77 16 18 O -0.56 -6.30 12.51 -35.23 -0.44 -6.74 16 19 C -0.12 -1.39 4.98 -90.62 -0.45 -1.85 16 20 C -0.18 -1.95 10.18 -26.69 -0.27 -2.22 16 21 C -0.18 -1.86 9.80 -26.69 -0.26 -2.12 16 22 H 0.03 0.60 6.57 -51.93 -0.34 0.25 16 23 H 0.06 1.33 6.62 -51.93 -0.34 0.98 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 1.15 6.62 -51.93 -0.34 0.81 16 27 H 0.04 0.80 7.60 -51.93 -0.39 0.40 16 28 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 32 H 0.02 0.36 7.36 -51.93 -0.38 -0.02 16 33 H 0.35 5.47 5.98 -39.29 -0.24 5.24 16 34 H 0.04 0.43 7.47 -51.93 -0.39 0.04 16 35 H 0.05 0.54 7.35 -51.92 -0.38 0.16 16 36 H 0.37 2.61 9.12 45.56 0.42 3.03 16 37 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.09 0.98 8.05 -51.93 -0.42 0.56 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 0.81 7.66 -51.93 -0.40 0.42 16 LS Contribution 321.36 15.07 4.84 4.84 Total: -1.00 -30.11 321.36 -7.79 -37.90 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.41 Total: 4.86 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -0.91 Total: -20.38 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.15 Total: -37.24 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.44 Total: -6.74 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.11 -7.79 -37.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883002297.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.498 kcal (2) G-P(sol) polarization free energy of solvation -30.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds