Wall clock time and date at job start Sun Mar 29 2020 22:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47044 * 2 1 4 4 C 1.52997 * 109.46982 * 240.00123 * 2 1 3 5 5 C 1.50699 * 109.47365 * 60.00290 * 4 2 1 6 6 H 1.08007 * 120.00189 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00480 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99854 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00453 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47448 * 89.99549 * 9 7 5 11 11 H 1.48506 * 109.47280 * 209.99989 * 9 7 5 12 12 H 1.48502 * 109.46862 * 329.99483 * 9 7 5 13 13 C 1.52998 * 109.46873 * 120.00288 * 2 1 3 14 14 N 1.46903 * 109.47062 * 299.99802 * 13 2 1 15 15 C 1.46899 * 110.99701 * 180.02562 * 14 13 2 16 16 H 1.09002 * 109.47432 * 34.99939 * 15 14 13 17 17 C 1.52999 * 109.47123 * 274.99985 * 15 14 13 18 18 O 1.42903 * 109.47256 * 295.00582 * 17 15 14 19 19 C 1.53002 * 109.46982 * 155.00191 * 15 14 13 20 20 C 1.52998 * 117.49660 * 248.74425 * 19 15 14 21 21 C 1.52997 * 117.49660 * 180.08406 * 19 15 14 22 22 H 1.08996 * 109.46871 * 300.00079 * 1 2 3 23 23 H 1.09002 * 109.46955 * 60.00039 * 1 2 3 24 24 H 1.08998 * 109.46977 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47622 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47630 * 300.00421 * 3 2 1 27 27 H 1.09004 * 109.46974 * 59.99696 * 3 2 1 28 28 H 1.09004 * 109.47269 * 179.97438 * 4 2 1 29 29 H 1.08998 * 109.47711 * 300.00098 * 4 2 1 30 30 H 0.96999 * 120.00140 * 180.02562 * 8 7 5 31 31 H 1.09007 * 109.46847 * 180.02562 * 13 2 1 32 32 H 1.08997 * 109.47503 * 60.00244 * 13 2 1 33 33 H 1.00897 * 110.99603 * 56.05138 * 14 13 2 34 34 H 1.08997 * 109.47286 * 175.00142 * 17 15 14 35 35 H 1.09008 * 109.47201 * 54.99922 * 17 15 14 36 36 H 0.96700 * 114.00311 * 180.02562 * 18 17 15 37 37 H 1.08998 * 115.54662 * 34.41373 * 19 15 14 38 38 H 1.09003 * 117.50056 * 359.97438 * 20 19 15 39 39 H 1.09004 * 117.49574 * 145.02002 * 20 19 15 40 40 H 1.09004 * 117.49425 * 214.97398 * 21 19 15 41 41 H 1.08993 * 117.50277 * 359.97438 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5378 -0.0108 -2.4797 6 1 0.9165 0.8672 -2.3807 7 6 1.8704 -0.4821 -3.7320 8 7 2.6264 -1.5514 -3.8527 9 14 1.2472 0.3981 -5.2572 10 1 2.2251 1.4398 -5.6619 11 1 1.0818 -0.5813 -6.3612 12 1 -0.0609 1.0356 -4.9610 13 6 2.0400 -0.7213 1.2492 14 7 1.5503 -0.0288 2.4487 15 6 2.0218 -0.6947 3.6702 16 1 3.0239 -1.0905 3.5048 17 6 1.0728 -1.8412 4.0248 18 8 -0.2124 -1.3110 4.3552 19 6 2.0553 0.3138 4.8203 20 6 3.4269 0.7275 5.3574 21 6 2.5241 -0.1888 6.1872 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4426 0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 3.1301 -0.7208 -1.2495 29 1 1.6767 -1.7489 -1.2494 30 1 2.8608 -1.8828 -4.7337 31 1 3.1301 -0.7209 1.2494 32 1 1.6767 -1.7490 1.2492 33 1 0.5438 0.0412 2.4401 34 1 1.4697 -2.3905 4.8786 35 1 0.9801 -2.5133 3.1716 36 1 -0.8663 -1.9830 4.5914 37 1 1.2717 1.0713 4.8042 38 1 4.3054 0.2809 4.8917 39 1 3.5455 1.7571 5.6951 40 1 2.0492 0.2384 7.0705 41 1 2.8083 -1.2380 6.2673 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883002297.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:08 Heat of formation + Delta-G solvation = -65.725780 kcal Electronic energy + Delta-G solvation = -18063.658964 eV Core-core repulsion = 15363.702055 eV Total energy + Delta-G solvation = -2699.956909 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.00128 -38.44779 -36.98486 -35.23809 -33.94334 -29.75702 -28.58696 -27.89186 -26.63211 -24.90109 -23.51682 -23.06273 -21.01854 -19.44114 -18.33668 -18.22187 -17.12244 -16.46348 -16.40317 -15.72142 -15.56502 -15.16379 -14.82205 -14.54877 -13.95555 -13.88134 -13.61818 -13.38971 -13.01292 -12.82271 -12.68833 -12.49874 -12.32842 -12.26032 -12.14579 -12.01962 -11.85211 -11.39909 -11.19295 -10.94799 -10.85924 -10.81302 -10.63361 -10.49851 -9.19284 -8.13570 -6.20446 1.41343 1.41862 1.52473 2.44265 2.90272 3.20376 3.23445 3.58713 3.85123 4.03239 4.13717 4.19782 4.26989 4.35968 4.40057 4.43450 4.58410 4.64359 4.71837 4.82874 4.85334 4.92884 4.98490 5.08574 5.11171 5.21735 5.22448 5.32265 5.42216 5.51729 5.54114 5.58185 5.67303 5.87629 5.93082 6.18143 6.38700 6.58222 6.90289 6.94394 7.46840 8.98828 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.041880 B = 0.004756 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.417869 B = 5886.164573 C = 6035.782645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.055 4.055 3 C -0.106 4.106 4 C 0.041 3.959 5 C -0.515 4.515 6 H 0.065 0.935 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.263 1.263 13 C 0.083 3.917 14 N -0.674 5.674 15 C 0.114 3.886 16 H 0.083 0.917 17 C 0.053 3.947 18 O -0.577 6.577 19 C -0.129 4.129 20 C -0.183 4.183 21 C -0.167 4.167 22 H 0.062 0.938 23 H 0.046 0.954 24 H 0.035 0.965 25 H 0.031 0.969 26 H 0.038 0.962 27 H 0.064 0.936 28 H -0.015 1.015 29 H -0.016 1.016 30 H 0.260 0.740 31 H 0.056 0.944 32 H 0.017 0.983 33 H 0.348 0.652 34 H 0.065 0.935 35 H 0.036 0.964 36 H 0.393 0.607 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.001 0.929 18.913 19.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.055 4.055 3 C -0.164 4.164 4 C 0.003 3.997 5 C -0.553 4.553 6 H 0.083 0.917 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.781 3.219 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.187 1.187 13 C -0.047 4.047 14 N -0.306 5.306 15 C 0.004 3.996 16 H 0.101 0.899 17 C -0.027 4.027 18 O -0.384 6.384 19 C -0.148 4.148 20 C -0.220 4.220 21 C -0.204 4.204 22 H 0.081 0.919 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.003 0.997 29 H 0.003 0.997 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.035 0.965 33 H 0.169 0.831 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.242 0.758 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.129 1.852 18.658 18.870 hybrid contribution -0.742 -1.358 -1.169 1.939 sum -2.871 0.495 17.489 17.730 Atomic orbital electron populations 1.21655 0.94829 1.00267 1.00932 1.20489 0.95676 0.96102 0.93265 1.21492 0.99133 0.95326 1.00401 1.19001 0.94083 0.93976 0.92633 1.21620 1.30263 1.11883 0.91494 0.91707 1.25905 0.95706 0.95869 1.02515 1.70109 1.38898 1.24910 1.24021 0.85581 0.79107 0.78242 0.78950 1.20128 1.21172 1.18720 1.21854 0.98878 0.94283 0.89646 1.60466 1.17245 1.52754 1.00168 1.21292 0.97218 0.91738 0.89330 0.89932 1.22805 0.84972 0.95865 0.99030 1.86430 1.21916 1.38992 1.91110 1.21873 0.98071 1.01246 0.93597 1.23065 0.94045 1.00564 1.04370 1.22972 1.03362 0.99870 0.94231 0.91877 0.93474 0.94535 0.95028 0.94258 0.91666 0.99689 0.99722 0.93163 0.92522 0.96506 0.83133 0.91716 0.94624 0.75774 0.88782 0.89142 0.88574 0.88143 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.51 7.89 71.98 0.57 -3.94 16 2 C -0.05 -2.25 0.60 -52.18 -0.03 -2.28 16 3 C -0.11 -4.19 8.06 71.98 0.58 -3.61 16 4 C 0.04 2.14 4.04 29.85 0.12 2.26 16 5 C -0.51 -28.85 7.65 25.60 0.20 -28.66 16 6 H 0.06 3.50 5.68 -2.91 -0.02 3.48 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 8 N -0.94 -57.70 13.29 21.45 0.28 -57.41 16 9 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 13 C 0.08 2.90 4.44 86.30 0.38 3.28 16 14 N -0.67 -19.77 5.46 -491.56 -2.68 -22.45 16 15 C 0.11 2.78 2.64 44.92 0.12 2.89 16 16 H 0.08 2.04 7.56 -2.39 -0.02 2.02 16 17 C 0.05 1.09 6.48 71.98 0.47 1.56 16 18 O -0.58 -11.60 12.51 -148.98 -1.86 -13.46 16 19 C -0.13 -2.87 4.98 -10.79 -0.05 -2.92 16 20 C -0.18 -3.62 10.18 30.62 0.31 -3.31 16 21 C -0.17 -2.90 9.80 30.62 0.30 -2.60 16 22 H 0.06 2.02 6.57 -2.39 -0.02 2.00 16 23 H 0.05 1.92 6.62 -2.39 -0.02 1.90 16 24 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.04 1.64 6.62 -2.39 -0.02 1.62 16 27 H 0.06 2.28 7.60 -2.38 -0.02 2.26 16 28 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16 29 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 30 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 31 H 0.06 2.07 8.05 -2.38 -0.02 2.05 16 32 H 0.02 0.60 7.36 -2.39 -0.02 0.58 16 33 H 0.35 10.29 5.98 -89.70 -0.54 9.75 16 34 H 0.06 1.08 7.47 -2.39 -0.02 1.06 16 35 H 0.04 0.80 7.35 -2.38 -0.02 0.79 16 36 H 0.39 4.53 9.12 -74.06 -0.68 3.86 16 37 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.09 1.79 8.05 -2.39 -0.02 1.78 16 39 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.10 1.51 7.66 -2.39 -0.02 1.49 16 Total: -1.00 -64.58 321.36 0.98 -63.60 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -0.21 Total: 19.91 kcal Atomic # 6 Polarization: -40.47 SS G_CDS: 3.42 Total: -37.04 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -2.40 Total: -79.87 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -1.86 Total: -13.46 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -64.58 0.98 -63.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883002297.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.121 kcal (2) G-P(sol) polarization free energy of solvation -64.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds