Wall clock time and date at job start Sun Mar 29 2020 22:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47456 * 2 1 4 4 H 1.09000 * 110.46026 * 52.38428 * 3 2 1 5 5 C 1.54480 * 110.50641 * 289.63764 * 3 2 1 6 6 O 1.44421 * 104.80571 * 265.33275 * 5 3 2 7 7 C 1.44650 * 105.36689 * 319.56742 * 6 5 3 8 8 C 1.54479 * 104.69657 * 40.34381 * 7 6 5 9 9 H 1.09004 * 110.50810 * 94.89970 * 8 7 6 10 10 N 1.46895 * 110.51157 * 217.47327 * 8 7 6 11 11 C 1.46896 * 111.00099 * 271.69622 * 10 8 7 12 12 C 1.53005 * 109.47134 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47218 * 299.99964 * 12 11 10 14 14 C 1.53006 * 109.47057 * 59.99837 * 12 11 10 15 15 C 1.50696 * 109.47211 * 179.97438 * 12 11 10 16 16 H 1.08007 * 120.00177 * 357.60618 * 15 12 11 17 17 C 1.37877 * 119.99977 * 177.61291 * 15 12 11 18 18 N 1.31513 * 119.99957 * 6.34182 * 17 15 12 19 19 Si 1.86805 * 119.99900 * 186.34709 * 17 15 12 20 20 H 1.48505 * 109.47113 * 84.97204 * 19 17 15 21 21 H 1.48496 * 109.47027 * 204.96879 * 19 17 15 22 22 H 1.48496 * 109.47232 * 324.97060 * 19 17 15 23 23 H 1.09000 * 109.46254 * 60.00232 * 1 2 3 24 24 H 1.08999 * 109.47138 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47257 * 300.00937 * 1 2 3 26 26 H 1.08996 * 109.47725 * 239.98953 * 2 1 3 27 27 H 1.09007 * 109.46513 * 119.99492 * 2 1 3 28 28 H 1.08993 * 110.37639 * 24.16699 * 5 3 2 29 29 H 1.09009 * 110.37120 * 146.50087 * 5 3 2 30 30 H 1.09003 * 110.34103 * 281.58675 * 7 6 5 31 31 H 1.09004 * 110.50619 * 159.18677 * 7 6 5 32 32 H 1.00902 * 111.00265 * 35.65128 * 10 8 7 33 33 H 1.09005 * 109.47301 * 299.99454 * 11 10 8 34 34 H 1.08995 * 109.47322 * 60.00283 * 11 10 8 35 35 H 1.09005 * 109.46931 * 65.10508 * 13 12 11 36 36 H 1.08993 * 109.47393 * 185.10641 * 13 12 11 37 37 H 1.08994 * 109.46862 * 305.11003 * 13 12 11 38 38 H 1.09004 * 109.46837 * 59.99994 * 14 12 11 39 39 H 1.08996 * 109.46775 * 180.02562 * 14 12 11 40 40 H 1.08999 * 109.46935 * 300.00134 * 14 12 11 41 41 H 0.97005 * 119.99509 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5795 2.0095 0.8089 5 6 1.7621 2.1148 -1.3628 6 8 2.9795 1.9343 -2.1185 7 6 4.0530 2.1573 -1.1750 8 6 3.5797 1.4723 0.1262 9 1 3.9773 0.4595 0.1911 10 7 3.9849 2.2590 1.2987 11 6 5.3258 1.8703 1.7557 12 6 5.7124 2.7099 2.9750 13 6 5.7129 4.1918 2.5945 14 6 4.7017 2.4723 4.0989 15 6 7.0877 2.3107 3.4442 16 1 7.6158 1.5093 2.9488 17 6 7.6717 2.9683 4.5060 18 7 6.9830 3.8570 5.1883 19 14 9.4413 2.5972 4.9753 20 1 10.3568 3.4206 4.1451 21 1 9.6507 2.9182 6.4100 22 1 9.7233 1.1577 4.7440 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8899 26 1 1.8935 -0.5140 -0.8898 27 1 1.8933 -0.5138 0.8901 28 1 0.9278 1.6247 -1.8645 29 1 1.5537 3.1761 -1.2268 30 1 4.1975 3.2251 -1.0109 31 1 4.9757 1.6990 -1.5312 32 1 3.9422 3.2480 1.1031 33 1 5.3255 0.8144 2.0265 34 1 6.0458 2.0400 0.9552 35 1 4.6990 4.5025 2.3422 36 1 6.0753 4.7828 3.4356 37 1 6.3647 4.3458 1.7346 38 1 4.7013 1.4165 4.3700 39 1 4.9769 3.0707 4.9674 40 1 3.7068 2.7607 3.7598 41 1 7.3941 4.3199 5.9350 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926567129.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:43 Heat of formation + Delta-G solvation = -78.480498 kcal Electronic energy + Delta-G solvation = -18349.374810 eV Core-core repulsion = 15648.864814 eV Total energy + Delta-G solvation = -2700.509995 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.82543 -38.34827 -35.67327 -34.95315 -32.87599 -29.68312 -28.82913 -27.50241 -27.24494 -25.43100 -24.97004 -22.34288 -21.14190 -20.29600 -18.00087 -17.39622 -17.23869 -16.62214 -16.39194 -15.46829 -15.36830 -14.98957 -14.66647 -14.37389 -14.19048 -13.86206 -13.55810 -13.09494 -13.03695 -12.96266 -12.66188 -12.48793 -12.45857 -12.41156 -12.18237 -12.03941 -11.87392 -11.57917 -11.41187 -11.30743 -10.86866 -10.73634 -10.62017 -10.32225 -9.16141 -7.96871 -6.13030 1.42616 1.44844 1.52275 2.46568 2.92598 3.25013 3.42212 3.72825 3.79934 4.00995 4.17093 4.18839 4.44753 4.53623 4.59125 4.61100 4.64616 4.75785 4.79680 4.87401 4.88689 4.96449 5.03784 5.14773 5.17285 5.23381 5.28954 5.38063 5.43908 5.47816 5.54927 5.70778 5.76149 5.78767 6.17542 6.25769 6.34031 6.49530 6.60963 6.96158 7.54313 9.01035 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.038773 B = 0.005227 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.973225 B = 5355.096228 C = 5563.641410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.109 4.109 4 H 0.091 0.909 5 C 0.045 3.955 6 O -0.392 6.392 7 C 0.019 3.981 8 C 0.058 3.942 9 H 0.081 0.919 10 N -0.672 5.672 11 C 0.090 3.910 12 C 0.059 3.941 13 C -0.122 4.122 14 C -0.106 4.106 15 C -0.527 4.527 16 H 0.044 0.956 17 C 0.024 3.976 18 N -0.902 5.902 19 Si 0.942 3.058 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.341 0.659 33 H 0.047 0.953 34 H 0.012 0.988 35 H 0.035 0.965 36 H 0.053 0.947 37 H 0.019 0.981 38 H 0.008 0.992 39 H 0.049 0.951 40 H 0.034 0.966 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.716 -3.740 -10.735 15.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C -0.128 4.128 4 H 0.109 0.891 5 C -0.031 4.031 6 O -0.311 6.311 7 C -0.059 4.059 8 C -0.053 4.053 9 H 0.099 0.901 10 N -0.304 5.304 11 C -0.039 4.039 12 C 0.058 3.942 13 C -0.180 4.180 14 C -0.164 4.164 15 C -0.565 4.565 16 H 0.062 0.938 17 C -0.175 4.175 18 N -0.541 5.541 19 Si 0.769 3.231 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.127 0.873 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.161 0.839 33 H 0.066 0.934 34 H 0.030 0.970 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.027 0.973 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.001 -4.082 -10.355 15.649 hybrid contribution 1.859 0.357 0.103 1.895 sum -9.142 -3.725 -10.252 14.232 Atomic orbital electron populations 1.21790 0.94357 1.02232 1.02202 1.21472 0.96967 0.94635 1.01649 1.22535 0.93986 0.98130 0.98127 0.89078 1.23695 0.88005 1.00240 0.91172 1.89097 1.16033 1.91995 1.33971 1.24258 0.91702 0.99852 0.90109 1.23065 0.96010 0.98042 0.88163 0.90082 1.60608 1.27567 1.09125 1.33116 1.21860 0.87102 0.98689 0.96210 1.18155 0.93079 0.91845 0.91094 1.21653 0.97447 0.99393 0.99508 1.21501 0.96680 0.97779 1.00409 1.21417 1.02100 1.17817 1.15210 0.93760 1.25511 1.00610 0.95375 0.96052 1.69975 1.36615 1.27385 1.20089 0.85822 0.81793 0.78374 0.77086 1.20411 1.21200 1.19916 0.91761 0.92011 0.92669 0.92004 0.92589 0.87337 0.91762 0.92215 0.89272 0.83933 0.93413 0.96962 0.94655 0.92802 0.96166 0.97250 0.93166 0.94713 0.93327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.78 71.98 0.70 -1.73 16 2 C -0.11 -2.27 5.17 30.59 0.16 -2.11 16 3 C -0.11 -2.51 2.90 -9.78 -0.03 -2.54 16 4 H 0.09 2.21 7.97 -2.39 -0.02 2.20 16 5 C 0.05 0.96 7.04 72.49 0.51 1.47 16 6 O -0.39 -10.51 11.65 -148.98 -1.74 -12.25 16 7 C 0.02 0.52 7.31 72.49 0.53 1.05 16 8 C 0.06 1.62 3.07 45.93 0.14 1.76 16 9 H 0.08 2.37 7.44 -2.38 -0.02 2.35 16 10 N -0.67 -22.20 5.45 -486.35 -2.65 -24.85 16 11 C 0.09 3.61 4.44 86.31 0.38 3.99 16 12 C 0.06 2.78 0.57 -52.92 -0.03 2.75 16 13 C -0.12 -5.59 7.82 71.98 0.56 -5.03 16 14 C -0.11 -5.10 8.11 71.98 0.58 -4.52 16 15 C -0.53 -28.15 8.01 25.60 0.20 -27.95 16 16 H 0.04 2.37 7.75 -2.91 -0.02 2.35 16 17 C 0.02 1.28 5.10 84.65 0.43 1.71 16 18 N -0.90 -49.97 9.38 21.45 0.20 -49.77 16 19 Si 0.94 43.07 29.54 68.60 2.03 45.10 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 21 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 23 H 0.06 0.90 6.73 -2.39 -0.02 0.89 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 27 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.11 1.89 6.48 -2.39 -0.02 1.87 16 29 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.06 1.58 7.58 -2.39 -0.02 1.57 16 31 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.34 11.02 6.28 -89.69 -0.56 10.46 16 33 H 0.05 1.98 8.08 -2.38 -0.02 1.96 16 34 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.03 1.41 6.84 -2.38 -0.02 1.40 16 36 H 0.05 2.79 6.01 -2.39 -0.01 2.77 16 37 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 39 H 0.05 2.68 6.03 -2.39 -0.01 2.67 16 40 H 0.03 1.51 7.60 -2.39 -0.02 1.49 16 41 H 0.26 13.75 8.31 -92.70 -0.77 12.98 16 Total: -1.00 -56.42 313.04 2.41 -54.01 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.42 Total: 18.91 kcal Atomic # 6 Polarization: -35.30 SS G_CDS: 4.15 Total: -31.15 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -2.45 Total: -74.62 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -1.74 Total: -12.25 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -56.42 2.41 -54.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926567129.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.474 kcal (2) G-P(sol) polarization free energy of solvation -56.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds