Wall clock time and date at job start Sun Mar 29 2020 22:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46831 * 2 1 4 4 H 1.09002 * 110.45429 * 58.87361 * 3 2 1 5 5 C 1.54479 * 110.51369 * 296.27231 * 3 2 1 6 6 O 1.44420 * 104.80250 * 217.37820 * 5 3 2 7 7 C 1.44420 * 105.27953 * 40.50778 * 6 5 3 8 8 C 1.54485 * 104.80375 * 319.49118 * 7 6 5 9 9 H 1.08999 * 110.50843 * 265.33179 * 8 7 6 10 10 N 1.46894 * 110.51286 * 142.62067 * 8 7 6 11 11 C 1.46902 * 111.00289 * 80.18013 * 10 8 7 12 12 C 1.52996 * 109.47334 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47178 * 300.00032 * 12 11 10 14 14 C 1.52998 * 109.47371 * 60.00287 * 12 11 10 15 15 C 1.50702 * 109.47174 * 180.02562 * 12 11 10 16 16 H 1.08002 * 119.99551 * 356.99914 * 15 12 11 17 17 C 1.37878 * 120.00300 * 176.99634 * 15 12 11 18 18 N 1.31515 * 119.99714 * 6.79507 * 17 15 12 19 19 Si 1.86794 * 120.00082 * 186.79888 * 17 15 12 20 20 H 1.48501 * 109.46991 * 94.90690 * 19 17 15 21 21 H 1.48503 * 109.46754 * 214.90541 * 19 17 15 22 22 H 1.48494 * 109.47083 * 334.90415 * 19 17 15 23 23 H 1.09003 * 109.46867 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47588 * 299.99567 * 1 2 3 25 25 H 1.08999 * 109.47304 * 59.99993 * 1 2 3 26 26 H 1.08996 * 109.46891 * 240.00474 * 2 1 3 27 27 H 1.08999 * 109.47304 * 120.00006 * 2 1 3 28 28 H 1.08998 * 110.37204 * 98.54356 * 5 3 2 29 29 H 1.09005 * 110.46324 * 336.25663 * 5 3 2 30 30 H 1.09005 * 110.37134 * 78.31726 * 7 6 5 31 31 H 1.09000 * 110.37692 * 200.65651 * 7 6 5 32 32 H 1.00903 * 110.99771 * 204.13812 * 10 8 7 33 33 H 1.08997 * 109.46661 * 300.00262 * 11 10 8 34 34 H 1.09004 * 109.46717 * 59.99611 * 11 10 8 35 35 H 1.09001 * 109.46986 * 61.88714 * 13 12 11 36 36 H 1.08996 * 109.47212 * 181.89020 * 13 12 11 37 37 H 1.09002 * 109.47302 * 301.89518 * 13 12 11 38 38 H 1.08997 * 109.47320 * 59.99400 * 14 12 11 39 39 H 1.08994 * 109.47101 * 180.02562 * 14 12 11 40 40 H 1.09004 * 109.46969 * 299.99950 * 14 12 11 41 41 H 0.96996 * 120.00042 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6692 1.9776 0.8743 5 6 1.6166 2.1664 -1.2974 6 8 2.7407 3.0083 -1.6338 7 6 3.9112 2.2084 -1.3585 8 6 3.5842 1.4708 -0.0410 9 1 3.9790 2.0213 0.8129 10 7 4.1235 0.1047 -0.0685 11 6 5.5589 0.0990 0.2440 12 6 6.0836 -1.3377 0.2052 13 6 5.3336 -2.1826 1.2371 14 6 5.8633 -1.9237 -1.1909 15 6 7.5559 -1.3437 0.5264 16 1 8.0768 -0.4117 0.6894 17 6 8.2381 -2.5388 0.6122 18 7 7.6392 -3.6627 0.2840 19 14 10.0127 -2.5616 1.1947 20 1 10.0514 -2.8400 2.6529 21 1 10.7584 -3.6209 0.4686 22 1 10.6389 -1.2424 0.9258 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 0.7279 2.7723 -1.1211 29 1 1.4312 1.4449 -2.0932 30 1 4.0790 1.4921 -2.1628 31 1 4.7852 2.8467 -1.2291 32 1 3.6141 -0.4978 0.5605 33 1 6.0932 0.7005 -0.4914 34 1 5.7159 0.5169 1.2384 35 1 4.2731 -2.2058 0.9860 36 1 5.7303 -3.1978 1.2330 37 1 5.4629 -1.7459 2.2274 38 1 6.3975 -1.3218 -1.9260 39 1 6.2366 -2.9473 -1.2183 40 1 4.7982 -1.9194 -1.4227 41 1 8.1191 -4.5035 0.3440 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926567130.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:45 Heat of formation + Delta-G solvation = -71.869252 kcal Electronic energy + Delta-G solvation = -18569.014876 eV Core-core repulsion = 15868.791566 eV Total energy + Delta-G solvation = -2700.223310 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.85819 -38.34417 -36.03401 -34.63554 -32.77772 -29.74756 -28.78718 -27.51468 -27.25485 -25.85832 -24.52276 -22.80931 -20.57728 -20.18098 -17.95252 -17.45051 -17.09789 -16.52068 -16.46883 -16.17353 -15.25855 -15.06923 -14.68637 -14.33983 -14.07087 -13.93060 -13.44368 -13.19516 -13.06181 -12.87080 -12.62939 -12.48924 -12.39703 -12.29632 -12.12934 -12.04375 -11.68369 -11.54095 -11.43116 -11.29546 -10.88357 -10.74335 -10.60211 -10.32410 -9.21067 -7.97452 -6.13092 1.41519 1.44441 1.52579 2.46349 2.99481 3.24544 3.44195 3.54847 3.86781 3.94192 4.28174 4.34837 4.42167 4.56478 4.58160 4.58524 4.65623 4.83016 4.86771 4.88714 4.93175 4.94558 5.03510 5.08990 5.16557 5.24908 5.29397 5.37682 5.43901 5.51978 5.55413 5.70875 5.76635 5.79690 6.17299 6.25876 6.34511 6.50179 6.62996 6.96044 7.54123 9.00821 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.037179 B = 0.005729 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.927452 B = 4886.143115 C = 5298.947668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.113 4.113 4 H 0.092 0.908 5 C 0.053 3.947 6 O -0.396 6.396 7 C 0.057 3.943 8 C 0.051 3.949 9 H 0.046 0.954 10 N -0.672 5.672 11 C 0.087 3.913 12 C 0.060 3.940 13 C -0.121 4.121 14 C -0.104 4.104 15 C -0.527 4.527 16 H 0.043 0.957 17 C 0.024 3.976 18 N -0.902 5.902 19 Si 0.942 3.058 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.346 0.654 33 H 0.048 0.952 34 H 0.008 0.992 35 H 0.035 0.965 36 H 0.054 0.946 37 H 0.017 0.983 38 H 0.008 0.992 39 H 0.049 0.951 40 H 0.034 0.966 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.014 7.969 -0.191 15.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.132 4.132 4 H 0.110 0.890 5 C -0.024 4.024 6 O -0.315 6.315 7 C -0.020 4.020 8 C -0.059 4.059 9 H 0.064 0.936 10 N -0.308 5.308 11 C -0.042 4.042 12 C 0.059 3.941 13 C -0.179 4.179 14 C -0.162 4.162 15 C -0.565 4.565 16 H 0.062 0.938 17 C -0.175 4.175 18 N -0.541 5.541 19 Si 0.769 3.231 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.127 0.873 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.169 0.831 33 H 0.066 0.934 34 H 0.026 0.974 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.028 0.972 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.892 7.997 -0.961 15.201 hybrid contribution 1.445 -0.269 1.350 1.996 sum -11.447 7.728 0.389 13.817 Atomic orbital electron populations 1.21781 0.94223 1.02217 1.02327 1.21414 0.96640 0.94457 1.02355 1.22642 0.92917 0.98050 0.99573 0.88999 1.23606 0.89962 0.93656 0.95137 1.89059 1.16092 1.38625 1.87719 1.23402 0.88707 0.93718 0.96177 1.22902 0.95376 0.90471 0.97172 0.93644 1.60757 1.03389 1.08288 1.58379 1.21876 0.87564 0.98344 0.96370 1.18142 0.92875 0.90200 0.92875 1.21650 0.96956 1.02235 0.97087 1.21483 0.97344 1.00804 0.96597 1.21431 0.95303 0.92129 1.47685 0.93846 1.25506 1.01013 0.95591 0.95414 1.69976 1.37674 0.98170 1.48249 0.85794 0.81458 0.77536 0.78293 1.20525 1.21171 1.19872 0.92327 0.92086 0.91964 0.91612 0.92317 0.87340 0.91860 0.92088 0.89621 0.83081 0.93356 0.97361 0.94603 0.92688 0.96375 0.97231 0.93245 0.94666 0.93312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.73 71.98 0.70 -1.72 16 2 C -0.11 -2.37 4.10 30.59 0.13 -2.24 16 3 C -0.11 -2.52 3.19 -9.78 -0.03 -2.55 16 4 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 5 C 0.05 1.15 6.20 72.48 0.45 1.60 16 6 O -0.40 -11.16 11.65 -148.98 -1.74 -12.90 16 7 C 0.06 1.67 6.96 72.49 0.50 2.17 16 8 C 0.05 1.46 3.39 45.93 0.16 1.61 16 9 H 0.05 1.33 7.98 -2.39 -0.02 1.31 16 10 N -0.67 -22.24 4.66 -486.34 -2.27 -24.50 16 11 C 0.09 3.53 4.43 86.30 0.38 3.92 16 12 C 0.06 2.83 0.57 -52.93 -0.03 2.80 16 13 C -0.12 -5.57 7.86 71.98 0.57 -5.00 16 14 C -0.10 -5.02 8.12 71.98 0.58 -4.44 16 15 C -0.53 -28.27 8.01 25.60 0.20 -28.07 16 16 H 0.04 2.35 7.75 -2.91 -0.02 2.32 16 17 C 0.02 1.29 5.11 84.65 0.43 1.73 16 18 N -0.90 -50.00 9.39 21.45 0.20 -49.79 16 19 Si 0.94 43.20 29.54 68.60 2.03 45.23 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 23 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 0.91 7.36 -2.39 -0.02 0.89 16 26 H 0.07 1.64 7.76 -2.39 -0.02 1.62 16 27 H 0.06 1.33 6.80 -2.39 -0.02 1.31 16 28 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 1.37 7.81 -2.38 -0.02 1.35 16 30 H 0.06 1.92 8.06 -2.38 -0.02 1.90 16 31 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.35 11.10 4.25 -89.69 -0.38 10.72 16 33 H 0.05 2.01 7.88 -2.39 -0.02 1.99 16 34 H 0.01 0.34 8.10 -2.39 -0.02 0.32 16 35 H 0.04 1.42 6.67 -2.39 -0.02 1.40 16 36 H 0.05 2.84 6.05 -2.39 -0.01 2.82 16 37 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.05 2.63 6.06 -2.39 -0.01 2.62 16 40 H 0.03 1.53 7.60 -2.38 -0.02 1.51 16 41 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -56.79 309.69 2.87 -53.92 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.60 Total: 18.24 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: 4.05 Total: -30.19 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: -2.06 Total: -74.30 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -1.74 Total: -12.90 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -56.79 2.87 -53.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926567130.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.948 kcal (2) G-P(sol) polarization free energy of solvation -56.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds