Wall clock time and date at job start Sun Mar 29 2020 22:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47042 * 2 1 4 4 H 1.09001 * 110.56120 * 303.78252 * 3 2 1 5 5 C 1.54477 * 110.50753 * 66.45531 * 3 2 1 6 6 O 1.44427 * 104.89561 * 142.67569 * 5 3 2 7 7 C 1.44424 * 105.27860 * 319.43582 * 6 5 3 8 8 C 1.54472 * 104.80133 * 40.51053 * 7 6 5 9 9 H 1.09003 * 110.50967 * 217.37284 * 8 7 6 10 10 N 1.46905 * 110.51464 * 94.80356 * 8 7 6 11 11 C 1.46899 * 110.99682 * 86.44923 * 10 8 7 12 12 C 1.53001 * 109.47185 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47155 * 300.00578 * 12 11 10 14 14 C 1.53005 * 109.46800 * 60.00177 * 12 11 10 15 15 C 1.50698 * 109.47623 * 180.02562 * 12 11 10 16 16 H 1.08002 * 119.99762 * 356.86275 * 15 12 11 17 17 C 1.37874 * 120.00236 * 176.86088 * 15 12 11 18 18 N 1.31517 * 119.99853 * 5.82462 * 17 15 12 19 19 Si 1.86800 * 120.00015 * 185.82031 * 17 15 12 20 20 H 1.48498 * 109.47196 * 85.03000 * 19 17 15 21 21 H 1.48498 * 109.47004 * 205.02743 * 19 17 15 22 22 H 1.48503 * 109.47312 * 325.02774 * 19 17 15 23 23 H 1.09007 * 109.46742 * 299.99369 * 1 2 3 24 24 H 1.08994 * 109.47422 * 59.99648 * 1 2 3 25 25 H 1.09000 * 109.46872 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46742 * 240.00631 * 2 1 3 27 27 H 1.08994 * 109.47422 * 120.00351 * 2 1 3 28 28 H 1.09003 * 110.37332 * 23.79612 * 5 3 2 29 29 H 1.08994 * 110.37762 * 261.56753 * 5 3 2 30 30 H 1.09003 * 110.37085 * 159.33958 * 7 6 5 31 31 H 1.08997 * 110.36775 * 281.56770 * 7 6 5 32 32 H 1.00897 * 110.99505 * 322.50221 * 10 8 7 33 33 H 1.09003 * 109.47607 * 300.00195 * 11 10 8 34 34 H 1.09004 * 109.47315 * 60.00481 * 11 10 8 35 35 H 1.09003 * 109.47129 * 53.81519 * 13 12 11 36 36 H 1.08998 * 109.47226 * 173.82158 * 13 12 11 37 37 H 1.09005 * 109.46697 * 293.81748 * 13 12 11 38 38 H 1.08990 * 109.47190 * 60.00125 * 14 12 11 39 39 H 1.08999 * 109.47082 * 180.02562 * 14 12 11 40 40 H 1.09006 * 109.46759 * 299.99872 * 14 12 11 41 41 H 0.97002 * 119.99891 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6326 1.9926 -0.8483 5 6 1.6755 2.1454 1.3264 6 8 2.8123 2.9841 1.6268 7 6 3.9706 2.1907 1.2883 8 6 3.5875 1.4732 -0.0249 9 1 3.9894 0.4600 -0.0379 10 7 4.0709 2.2321 -1.1861 11 6 5.4555 1.8671 -1.5141 12 6 5.9231 2.6766 -2.7253 13 6 5.0186 2.3733 -3.9215 14 6 5.8529 4.1698 -2.3987 15 6 7.3433 2.3018 -3.0623 16 1 7.8778 1.5981 -2.4414 17 6 7.9602 2.8573 -4.1631 18 7 7.3527 3.7983 -4.8524 19 14 9.6591 2.2734 -4.6754 20 1 9.5304 1.0686 -5.5339 21 1 10.3448 3.3505 -5.4336 22 1 10.4525 1.9371 -3.4660 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.5271 1.4101 2.1172 29 1 0.7789 2.7523 1.2004 30 1 4.8375 2.8326 1.1311 31 1 4.1752 1.4636 2.0742 32 1 3.9861 3.2253 -1.0297 33 1 6.1000 2.0837 -0.6621 34 1 5.5056 0.8033 -1.7464 35 1 3.9783 2.5401 -3.6419 36 1 5.2815 3.0291 -4.7514 37 1 5.1515 1.3343 -4.2232 38 1 6.4972 4.3859 -1.5466 39 1 6.1856 4.7465 -3.2617 40 1 4.8255 4.4405 -2.1553 41 1 7.7869 4.1893 -5.6266 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926567131.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:47 Heat of formation + Delta-G solvation = -63.330569 kcal Electronic energy + Delta-G solvation = -18374.062144 eV Core-core repulsion = 15674.209098 eV Total energy + Delta-G solvation = -2699.853045 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.71498 -36.58030 -34.61205 -33.48748 -31.00455 -28.60276 -27.64732 -25.55099 -25.21014 -23.94975 -23.81495 -21.23185 -20.18457 -18.38922 -16.45053 -15.94382 -15.75632 -15.32572 -14.73609 -14.43534 -13.95491 -13.62364 -13.60594 -12.92218 -12.58050 -12.45231 -12.10582 -12.02685 -11.57373 -11.30393 -11.12543 -10.98104 -10.88826 -10.69213 -10.58553 -10.55319 -10.50916 -10.16562 -10.06614 -9.78388 -9.35963 -9.05293 -8.62722 -8.26520 -7.68859 -5.90921 -4.00033 3.32498 3.39064 3.41289 4.05424 4.42465 4.57141 4.73913 4.93265 5.01803 5.16332 5.26455 5.35100 5.36177 5.41835 5.52863 5.68042 5.78504 5.79591 5.84071 6.01476 6.05936 6.20915 6.33125 6.35698 6.42568 6.72068 6.82875 6.91641 7.09396 7.18680 7.37805 7.48243 7.75030 7.76631 7.84375 7.96935 8.21853 8.33558 8.56231 9.01038 9.64581 11.10342 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.038215 B = 0.005286 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.527584 B = 5295.244313 C = 5485.724884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.114 4.114 4 H 0.095 0.905 5 C 0.048 3.952 6 O -0.376 6.376 7 C 0.013 3.987 8 C 0.059 3.941 9 H 0.087 0.913 10 N -0.674 5.674 11 C 0.074 3.926 12 C 0.069 3.931 13 C -0.118 4.118 14 C -0.132 4.132 15 C -0.509 4.509 16 H 0.051 0.949 17 C 0.067 3.933 18 N -0.883 5.883 19 Si 0.888 3.112 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.343 0.657 33 H 0.013 0.987 34 H 0.056 0.944 35 H 0.022 0.978 36 H 0.070 0.930 37 H 0.019 0.981 38 H 0.018 0.982 39 H 0.083 0.917 40 H 0.010 0.990 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.744 -5.026 9.730 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.133 4.133 4 H 0.113 0.887 5 C -0.029 4.029 6 O -0.295 6.295 7 C -0.065 4.065 8 C -0.052 4.052 9 H 0.105 0.895 10 N -0.306 5.306 11 C -0.054 4.054 12 C 0.068 3.932 13 C -0.176 4.176 14 C -0.190 4.190 15 C -0.547 4.547 16 H 0.070 0.930 17 C -0.135 4.135 18 N -0.522 5.522 19 Si 0.716 3.284 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.202 1.202 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.163 0.837 33 H 0.031 0.969 34 H 0.075 0.925 35 H 0.041 0.959 36 H 0.088 0.912 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.102 0.898 40 H 0.029 0.971 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.975 -5.111 9.179 15.193 hybrid contribution 1.550 -0.146 0.381 1.602 sum -9.425 -5.257 9.560 14.418 Atomic orbital electron populations 1.21792 0.95881 1.01445 1.01834 1.21510 0.95707 0.95569 1.02188 1.22680 0.95331 0.96705 0.98596 0.88691 1.23523 0.90161 0.93770 0.95491 1.89118 1.15121 1.38501 1.86739 1.24238 0.89845 0.95301 0.97156 1.23043 0.94406 0.98606 0.89177 0.89488 1.60685 1.24086 1.10649 1.35145 1.22193 0.85069 0.99983 0.98172 1.18094 0.94104 0.91090 0.89907 1.21629 0.96105 0.99358 1.00534 1.21854 0.95848 1.00058 1.01217 1.21081 0.97561 1.25430 1.10655 0.93050 1.24879 0.97377 0.94705 0.96498 1.69858 1.37837 1.25603 1.18902 0.86689 0.84688 0.78397 0.78626 1.20725 1.21394 1.20190 0.92929 0.92471 0.92893 0.91224 0.92283 0.92730 0.89519 0.89109 0.92668 0.83705 0.96876 0.92536 0.95873 0.91159 0.96157 0.96237 0.89823 0.97074 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.76 37.16 0.36 -0.99 16 2 C -0.11 -1.18 5.15 -26.73 -0.14 -1.31 16 3 C -0.11 -1.42 2.96 -88.90 -0.26 -1.68 16 4 H 0.09 1.31 7.98 -51.93 -0.41 0.89 16 5 C 0.05 0.56 6.31 37.93 0.24 0.80 16 6 O -0.38 -5.63 11.65 -35.23 -0.41 -6.04 16 7 C 0.01 0.19 7.04 37.93 0.27 0.46 16 8 C 0.06 0.86 3.07 -65.99 -0.20 0.66 16 9 H 0.09 1.25 7.48 -51.93 -0.39 0.86 16 10 N -0.67 -11.96 5.30 -104.91 -0.56 -12.51 16 11 C 0.07 1.52 4.40 -3.82 -0.02 1.51 16 12 C 0.07 1.66 0.57 -155.66 -0.09 1.57 16 13 C -0.12 -2.89 8.05 37.16 0.30 -2.59 16 14 C -0.13 -3.14 7.95 37.16 0.30 -2.85 16 15 C -0.51 -13.68 8.01 -34.44 -0.28 -13.96 16 16 H 0.05 1.38 7.75 -52.49 -0.41 0.97 16 17 C 0.07 1.81 5.13 -17.82 -0.09 1.72 16 18 N -0.88 -24.56 9.46 55.43 0.52 -24.03 16 19 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 H 0.05 0.43 7.49 -51.93 -0.39 0.04 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.57 8.06 -51.93 -0.42 0.16 16 28 H 0.05 0.57 7.81 -51.93 -0.41 0.17 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.38 7.71 -51.93 -0.40 0.98 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.34 6.29 6.54 -39.29 -0.26 6.04 16 33 H 0.01 0.27 7.81 -51.93 -0.41 -0.14 16 34 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 35 H 0.02 0.51 7.42 -51.93 -0.39 0.13 16 36 H 0.07 1.87 6.25 -51.93 -0.32 1.55 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 2.21 6.11 -51.93 -0.32 1.90 16 40 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 41 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 314.02 15.07 4.73 4.73 Total: -1.00 -27.47 314.02 -7.71 -35.18 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.37 Total: 3.22 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 0.39 Total: -16.67 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.03 Total: -36.55 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.41 Total: -6.04 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.47 -7.71 -35.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926567131.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.146 kcal (2) G-P(sol) polarization free energy of solvation -27.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds