Wall clock time and date at job start Sun Mar 29 2020 22:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46880 * 2 1 4 4 H 1.09001 * 110.56463 * 306.38020 * 3 2 1 5 5 C 1.54480 * 110.51060 * 69.05871 * 3 2 1 6 6 O 1.44690 * 104.83864 * 142.62227 * 5 3 2 7 7 C 1.44422 * 105.13835 * 319.51885 * 6 5 3 8 8 C 1.54478 * 104.90145 * 40.49492 * 7 6 5 9 9 H 1.09007 * 110.51030 * 94.61122 * 8 7 6 10 10 N 1.46897 * 110.51147 * 217.18288 * 8 7 6 11 11 C 1.46903 * 110.99941 * 283.98914 * 10 8 7 12 12 C 1.53004 * 109.47069 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46883 * 299.99859 * 12 11 10 14 14 C 1.53001 * 109.47278 * 59.99918 * 12 11 10 15 15 C 1.50697 * 109.47061 * 180.02562 * 12 11 10 16 16 H 1.07994 * 120.00466 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99964 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00050 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 119.99917 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.46827 * 90.00343 * 19 17 15 21 21 H 1.48504 * 109.46842 * 209.99907 * 19 17 15 22 22 H 1.48494 * 109.47548 * 330.00033 * 19 17 15 23 23 H 1.09006 * 109.46993 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47254 * 299.99602 * 1 2 3 25 25 H 1.08999 * 109.47465 * 59.99901 * 1 2 3 26 26 H 1.08998 * 109.47254 * 240.00398 * 2 1 3 27 27 H 1.08999 * 109.47465 * 120.00098 * 2 1 3 28 28 H 1.08998 * 110.37025 * 261.45661 * 5 3 2 29 29 H 1.09006 * 110.37308 * 23.68189 * 5 3 2 30 30 H 1.08995 * 110.37339 * 281.60572 * 7 6 5 31 31 H 1.09004 * 110.37378 * 159.38184 * 7 6 5 32 32 H 1.00902 * 110.99902 * 160.03967 * 10 8 7 33 33 H 1.08999 * 109.47360 * 299.99632 * 11 10 8 34 34 H 1.08997 * 109.47558 * 60.00125 * 11 10 8 35 35 H 1.08999 * 109.47316 * 60.00411 * 13 12 11 36 36 H 1.09001 * 109.46925 * 180.02562 * 13 12 11 37 37 H 1.09003 * 109.47245 * 300.00087 * 13 12 11 38 38 H 1.08994 * 109.47082 * 60.00029 * 14 12 11 39 39 H 1.08994 * 109.47051 * 180.02562 * 14 12 11 40 40 H 1.09005 * 109.46810 * 299.99850 * 14 12 11 41 41 H 0.96998 * 120.00802 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 2.0053 -0.8216 5 6 1.7328 2.1252 1.3513 6 8 2.8849 2.9597 1.6152 7 6 4.0240 2.1684 1.2125 8 6 3.5819 1.4716 -0.0934 9 1 3.9012 2.0488 -0.9612 10 7 4.1224 0.1072 -0.1572 11 6 5.5508 0.1222 -0.4997 12 6 6.0767 -1.3135 -0.5572 13 6 5.8861 -1.9813 0.8061 14 6 5.3053 -2.0969 -1.6212 15 6 7.5422 -1.2980 -0.9079 16 1 8.0479 -0.3583 -1.0737 17 6 8.2374 -2.4836 -1.0172 18 7 7.6215 -3.6280 -0.8159 19 14 10.0538 -2.4645 -1.4527 20 1 10.8605 -2.3940 -0.2079 21 1 10.3977 -3.7033 -2.1959 22 1 10.3473 -1.2811 -2.3003 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 0.8329 2.7351 1.2724 29 1 1.6161 1.3778 2.1362 30 1 4.2607 1.4279 1.9764 31 1 4.8855 2.8101 1.0273 32 1 3.6001 -0.4585 -0.8094 33 1 5.6866 0.5976 -1.4711 34 1 6.1003 0.6807 0.2581 35 1 4.8262 -1.9926 1.0602 36 1 6.2611 -3.0040 0.7652 37 1 6.4356 -1.4232 1.5641 38 1 5.4411 -1.6211 -2.5924 39 1 5.6796 -3.1198 -1.6619 40 1 4.2454 -2.1081 -1.3670 41 1 8.1106 -4.4622 -0.8924 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926567132.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:49 Heat of formation + Delta-G solvation = -71.891654 kcal Electronic energy + Delta-G solvation = -18567.509458 eV Core-core repulsion = 15867.285176 eV Total energy + Delta-G solvation = -2700.224282 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.83383 -38.33713 -36.01388 -34.63841 -32.76758 -29.76381 -28.78674 -27.51247 -27.25180 -25.86897 -24.45521 -22.83333 -20.58427 -20.17239 -17.95011 -17.43207 -17.12234 -16.52600 -16.44751 -16.19850 -15.21017 -15.05977 -14.69095 -14.31792 -14.07545 -13.93096 -13.49086 -13.19432 -13.04088 -12.88102 -12.60870 -12.50286 -12.37770 -12.28298 -12.11157 -12.05373 -11.67780 -11.55146 -11.40652 -11.28965 -10.88325 -10.75994 -10.58531 -10.34019 -9.21066 -7.96678 -6.13280 1.42017 1.44446 1.52301 2.46388 2.99228 3.25625 3.43334 3.55667 3.86923 3.93940 4.27552 4.35102 4.43113 4.56740 4.58483 4.59043 4.65399 4.83263 4.86756 4.88851 4.92860 4.95796 5.03797 5.10355 5.16918 5.26187 5.29996 5.37454 5.43679 5.52693 5.55976 5.70503 5.77052 5.78750 6.17233 6.26399 6.34713 6.49790 6.62980 6.96134 7.54337 9.01417 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.036847 B = 0.005761 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.719054 B = 4859.498927 C = 5302.892995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.111 4.111 4 H 0.092 0.908 5 C 0.052 3.948 6 O -0.396 6.396 7 C 0.057 3.943 8 C 0.052 3.948 9 H 0.044 0.956 10 N -0.671 5.671 11 C 0.087 3.913 12 C 0.060 3.940 13 C -0.104 4.104 14 C -0.121 4.121 15 C -0.526 4.526 16 H 0.043 0.957 17 C 0.023 3.977 18 N -0.903 5.903 19 Si 0.943 3.057 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.346 0.654 33 H 0.007 0.993 34 H 0.049 0.951 35 H 0.035 0.965 36 H 0.047 0.953 37 H 0.009 0.991 38 H 0.016 0.984 39 H 0.056 0.944 40 H 0.034 0.966 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.907 7.944 1.350 15.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 C -0.130 4.130 4 H 0.110 0.890 5 C -0.024 4.024 6 O -0.315 6.315 7 C -0.020 4.020 8 C -0.059 4.059 9 H 0.062 0.938 10 N -0.307 5.307 11 C -0.042 4.042 12 C 0.059 3.941 13 C -0.162 4.162 14 C -0.179 4.179 15 C -0.565 4.565 16 H 0.062 0.938 17 C -0.176 4.176 18 N -0.542 5.542 19 Si 0.770 3.230 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.127 0.873 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.169 0.831 33 H 0.025 0.975 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.028 0.972 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.764 7.929 2.103 15.173 hybrid contribution 1.442 -0.186 -1.298 1.949 sum -11.322 7.744 0.806 13.741 Atomic orbital electron populations 1.21789 0.94329 1.02171 1.02289 1.21385 0.96413 0.94359 1.02343 1.22625 0.93123 0.98178 0.99094 0.88953 1.23660 0.89493 0.94017 0.95258 1.89117 1.16465 1.39904 1.86000 1.23384 0.89322 0.94060 0.95279 1.22896 0.95304 0.90417 0.97265 0.93767 1.60765 1.03194 1.10403 1.56364 1.21869 0.87731 0.98243 0.96323 1.18139 0.92857 0.90256 0.92817 1.21462 0.97467 1.00825 0.96473 1.21663 0.96757 1.02315 0.97138 1.21431 0.95756 0.92097 1.47218 0.93846 1.25510 1.01243 0.95467 0.95361 1.69954 1.36524 0.97442 1.50277 0.85797 0.81820 0.77273 0.78121 1.20607 1.21058 1.19864 0.92367 0.91962 0.92164 0.92361 0.91775 0.87328 0.91856 0.92151 0.89643 0.83137 0.97454 0.93254 0.94554 0.93362 0.97197 0.96507 0.92539 0.94680 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.78 71.98 0.70 -1.73 16 2 C -0.11 -2.30 4.24 30.60 0.13 -2.17 16 3 C -0.11 -2.48 3.13 -9.78 -0.03 -2.51 16 4 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 5 C 0.05 1.14 6.45 72.49 0.47 1.61 16 6 O -0.40 -11.20 11.67 -148.98 -1.74 -12.94 16 7 C 0.06 1.66 6.74 72.48 0.49 2.15 16 8 C 0.05 1.47 3.39 45.93 0.16 1.62 16 9 H 0.04 1.29 8.05 -2.38 -0.02 1.27 16 10 N -0.67 -22.16 4.69 -486.33 -2.28 -24.44 16 11 C 0.09 3.52 4.43 86.30 0.38 3.91 16 12 C 0.06 2.84 0.57 -52.93 -0.03 2.81 16 13 C -0.10 -5.01 8.09 71.98 0.58 -4.42 16 14 C -0.12 -5.56 7.92 71.98 0.57 -4.99 16 15 C -0.53 -28.24 8.01 25.60 0.21 -28.03 16 16 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 17 C 0.02 1.25 5.15 84.66 0.44 1.69 16 18 N -0.90 -50.07 9.35 21.45 0.20 -49.87 16 19 Si 0.94 43.25 29.54 68.60 2.03 45.27 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 23 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 24 H 0.06 0.90 7.58 -2.39 -0.02 0.88 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 1.34 6.49 -2.39 -0.02 1.33 16 27 H 0.06 1.58 7.86 -2.39 -0.02 1.56 16 28 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.06 1.38 7.77 -2.38 -0.02 1.36 16 30 H 0.06 1.91 8.06 -2.39 -0.02 1.89 16 31 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 32 H 0.35 11.09 4.32 -89.69 -0.39 10.70 16 33 H 0.01 0.30 8.12 -2.39 -0.02 0.28 16 34 H 0.05 2.05 7.71 -2.39 -0.02 2.03 16 35 H 0.04 1.57 7.60 -2.39 -0.02 1.55 16 36 H 0.05 2.56 6.07 -2.39 -0.01 2.55 16 37 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 2.92 6.07 -2.39 -0.01 2.91 16 40 H 0.03 1.39 6.57 -2.38 -0.02 1.37 16 41 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -56.76 309.79 2.86 -53.90 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.59 Total: 18.14 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: 4.06 Total: -30.07 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: -2.08 Total: -74.31 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -1.74 Total: -12.94 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -56.76 2.86 -53.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926567132.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.989 kcal (2) G-P(sol) polarization free energy of solvation -56.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds