Wall clock time and date at job start Sun Mar 29 2020 22:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53003 * 109.46930 * 2 1 4 4 C 1.53005 * 109.47443 * 120.00111 * 2 1 3 5 5 C 1.53001 * 109.47243 * 175.00264 * 4 2 1 6 6 N 1.46899 * 109.46981 * 180.02562 * 5 4 2 7 7 C 1.46904 * 110.99702 * 169.99965 * 6 5 4 8 8 C 1.53002 * 109.46826 * 285.02511 * 7 6 5 9 9 H 1.08997 * 109.47120 * 56.27825 * 8 7 6 10 10 O 1.42895 * 109.47274 * 296.27445 * 8 7 6 11 11 C 1.50703 * 109.46623 * 176.27532 * 8 7 6 12 12 H 1.08000 * 120.00349 * 359.97438 * 11 8 7 13 13 C 1.37884 * 119.99666 * 180.02562 * 11 8 7 14 14 N 1.31515 * 119.99860 * 180.02562 * 13 11 8 15 15 Si 1.86790 * 120.00007 * 359.97438 * 13 11 8 16 16 H 1.48505 * 109.47374 * 90.00518 * 15 13 11 17 17 H 1.48500 * 109.47265 * 210.00168 * 15 13 11 18 18 H 1.48501 * 109.47552 * 330.00278 * 15 13 11 19 19 C 1.46894 * 110.99851 * 293.94987 * 6 5 4 20 20 C 1.52999 * 117.50225 * 246.83881 * 19 6 5 21 21 C 1.53000 * 117.49908 * 178.17945 * 19 6 5 22 22 H 1.09002 * 109.47400 * 299.99560 * 1 2 3 23 23 H 1.09001 * 109.47716 * 59.99647 * 1 2 3 24 24 H 1.09001 * 109.47298 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47400 * 240.00440 * 2 1 3 26 26 H 1.09001 * 109.46763 * 60.00575 * 3 2 1 27 27 H 1.09001 * 109.46931 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47232 * 299.99882 * 3 2 1 29 29 H 1.08992 * 109.46714 * 54.99854 * 4 2 1 30 30 H 1.08997 * 109.46817 * 294.99856 * 4 2 1 31 31 H 1.09001 * 109.47080 * 59.99884 * 5 4 2 32 32 H 1.09003 * 109.47130 * 300.00217 * 5 4 2 33 33 H 1.09001 * 109.46962 * 45.02625 * 7 6 5 34 34 H 1.08996 * 109.46706 * 165.02988 * 7 6 5 35 35 H 0.96698 * 113.99946 * 295.10181 * 10 8 7 36 36 H 0.96998 * 119.99795 * 179.97438 * 14 13 11 37 37 H 1.08999 * 115.55400 * 32.51956 * 19 6 5 38 38 H 1.09002 * 117.49435 * 0.02562 * 20 19 6 39 39 H 1.08998 * 117.49684 * 145.01945 * 20 19 6 40 40 H 1.09001 * 117.50747 * 214.98381 * 21 19 6 41 41 H 1.09001 * 117.49366 * 359.97438 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1880 6 7 4.0545 -1.5240 2.3871 7 6 5.4789 -1.8587 2.2569 8 6 5.6391 -3.0439 1.3026 9 1 5.1781 -2.8038 0.3445 10 8 5.0037 -4.1951 1.8619 11 6 7.1047 -3.3290 1.0974 12 1 7.8475 -2.7250 1.5973 13 6 7.4972 -4.3603 0.2707 14 7 8.7761 -4.6094 0.0921 15 14 6.2125 -5.4044 -0.5944 16 1 5.8903 -4.8014 -1.9127 17 1 6.7430 -6.7769 -0.7944 18 1 4.9829 -5.4652 0.2359 19 6 3.8100 -0.7237 3.5943 20 6 5.0296 -0.1724 4.3355 21 6 4.2249 -1.3269 4.9378 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6766 1.9563 0.8901 27 1 3.1299 1.4425 0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6054 -1.7198 1.2951 30 1 1.7517 -0.1583 2.1369 31 1 3.9994 0.1676 1.1420 32 1 3.8532 -1.3939 0.3002 33 1 6.0196 -0.9985 1.8620 34 1 5.8809 -2.1229 3.2349 35 1 5.4118 -4.5114 2.6795 36 1 9.0522 -5.3352 -0.4892 37 1 2.9113 -0.1071 3.5757 38 1 6.0135 -0.4033 3.9271 39 1 4.9333 0.8067 4.8047 40 1 3.5995 -1.1068 5.8030 41 1 4.6789 -2.3178 4.9258 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929274133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:38 Heat of formation + Delta-G solvation = -32.099884 kcal Electronic energy + Delta-G solvation = -18301.843265 eV Core-core repulsion = 15603.344484 eV Total energy + Delta-G solvation = -2698.498781 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.96977 -36.49899 -35.80040 -33.14342 -32.20377 -29.56216 -27.56750 -27.16820 -24.64388 -22.88382 -22.15357 -21.02972 -19.94443 -19.02489 -17.15417 -16.29511 -15.42365 -15.09423 -14.76035 -14.35136 -14.18230 -13.72166 -13.41067 -13.24121 -12.86729 -12.56603 -12.31791 -12.25467 -11.85923 -11.52926 -11.39700 -11.26320 -11.00356 -10.90972 -10.64481 -10.55419 -10.47051 -10.30211 -10.20360 -9.98216 -9.77859 -8.96252 -8.60773 -8.20630 -7.55674 -6.12092 -4.23281 3.40657 3.50483 3.78809 3.97951 4.35693 4.55571 4.86181 4.96387 4.99421 5.13871 5.16876 5.23370 5.30144 5.43777 5.55897 5.62286 5.72890 5.77150 5.80433 5.83773 5.85906 5.94213 5.99616 6.07931 6.10428 6.20549 6.21545 6.27530 6.37155 6.38453 6.48375 6.52601 6.67395 7.31997 7.43310 7.65697 7.72662 8.30270 8.85404 9.15309 9.52968 10.98544 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019278 B = 0.007401 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.085178 B = 3782.474972 C = 4669.226029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C -0.148 4.148 4 C -0.108 4.108 5 C 0.055 3.945 6 N -0.498 5.498 7 C 0.037 3.963 8 C 0.204 3.796 9 H 0.051 0.949 10 O -0.571 6.571 11 C -0.567 4.567 12 H 0.070 0.930 13 C 0.084 3.916 14 N -0.894 5.894 15 Si 0.869 3.131 16 H -0.288 1.288 17 H -0.296 1.296 18 H -0.214 1.214 19 C 0.025 3.975 20 C -0.227 4.227 21 C -0.173 4.173 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.032 0.968 32 H 0.078 0.922 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.353 0.647 36 H 0.265 0.735 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.621 9.843 3.978 17.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.206 4.206 4 C -0.146 4.146 5 C -0.072 4.072 6 N -0.219 5.219 7 C -0.090 4.090 8 C 0.146 3.854 9 H 0.069 0.931 10 O -0.376 6.376 11 C -0.604 4.604 12 H 0.088 0.912 13 C -0.121 4.121 14 N -0.531 5.531 15 Si 0.695 3.305 16 H -0.215 1.215 17 H -0.223 1.223 18 H -0.136 1.136 19 C -0.085 4.085 20 C -0.267 4.267 21 C -0.211 4.211 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.199 0.801 36 H 0.074 0.926 37 H 0.130 0.870 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.156 9.364 3.400 17.310 hybrid contribution 0.599 0.253 -0.103 0.658 sum -13.557 9.617 3.297 16.946 Atomic orbital electron populations 1.21815 0.95456 1.01655 1.01260 1.21116 0.95460 0.96250 0.98966 1.21895 1.01416 0.96071 1.01173 1.21644 0.95315 1.00830 0.96796 1.22180 0.94787 0.96548 0.93722 1.61907 1.18956 1.40566 1.00459 1.22950 0.85353 0.99312 1.01402 1.19688 0.92430 0.81883 0.91431 0.93108 1.86647 1.60411 1.47626 1.42875 1.21534 0.91027 1.17648 1.30235 0.91158 1.24986 0.95347 0.96635 0.95107 1.69960 1.15381 1.30499 1.37233 0.87060 0.85045 0.78740 0.79635 1.21477 1.22308 1.13620 1.22688 0.97313 0.98672 0.89798 1.23599 0.98379 0.98057 1.06620 1.23023 1.03592 0.98298 0.96214 0.92973 0.93030 0.92663 0.91087 0.93030 0.92349 0.93106 0.91072 0.92404 0.95011 0.90405 0.94664 0.91030 0.80093 0.92601 0.87035 0.88067 0.89600 0.89167 0.88366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.19 37.15 0.34 -1.08 16 2 C -0.10 -1.12 2.92 -90.62 -0.26 -1.38 16 3 C -0.15 -1.55 8.95 37.16 0.33 -1.22 16 4 C -0.11 -1.41 4.68 -26.73 -0.12 -1.54 16 5 C 0.06 0.87 4.54 -3.82 -0.02 0.85 16 6 N -0.50 -8.58 4.59 -226.65 -1.04 -9.62 16 7 C 0.04 0.73 3.23 -3.82 -0.01 0.72 16 8 C 0.20 4.79 2.39 -27.88 -0.07 4.72 16 9 H 0.05 1.25 6.07 -51.93 -0.32 0.93 16 10 O -0.57 -13.27 10.08 -35.23 -0.36 -13.62 16 11 C -0.57 -15.73 9.30 -34.44 -0.32 -16.05 16 12 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 13 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16 14 N -0.89 -27.35 13.96 55.43 0.77 -26.58 16 15 Si 0.87 21.99 26.99 -169.99 -4.59 17.40 16 16 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 17 H -0.30 -7.54 7.11 56.52 0.40 -7.13 16 18 H -0.21 -5.33 5.31 56.52 0.30 -5.03 16 19 C 0.03 0.37 5.83 -67.72 -0.39 -0.03 16 20 C -0.23 -3.18 9.56 -26.70 -0.26 -3.43 16 21 C -0.17 -2.39 9.91 -26.69 -0.26 -2.66 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.65 6.56 -51.93 -0.34 0.31 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.71 6.40 -51.93 -0.33 0.37 16 31 H 0.03 0.48 6.54 -51.93 -0.34 0.14 16 32 H 0.08 1.36 6.53 -51.93 -0.34 1.02 16 33 H 0.04 0.72 7.83 -51.93 -0.41 0.31 16 34 H 0.07 1.41 5.59 -51.93 -0.29 1.12 16 35 H 0.35 7.45 9.02 45.56 0.41 7.86 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.11 1.46 6.34 -51.93 -0.33 1.13 16 38 H 0.10 1.58 6.03 -51.93 -0.31 1.27 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.10 1.49 7.46 -51.93 -0.39 1.10 16 LS Contribution 315.06 15.07 4.75 4.75 Total: -1.00 -30.26 315.06 -8.05 -38.31 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -6.44 Total: 8.14 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -1.14 Total: -18.77 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: -0.27 Total: -36.20 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.36 Total: -13.62 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.59 Total: 17.40 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.26 -8.05 -38.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929274133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.208 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds